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2021-09-21ccfits: add v2.6 (#26089)bernhardkaindl1-0/+1
ccfits@2.5 doesn't compile on Ubuntu 18.04: Update to version 2.6.
2021-09-21Fix deps of ↵bernhardkaindl7-0/+8
diffmark,faiss,fgsl,fipcheck,nbdkit,ncbi-magicblast,xcb-util-cursor (#26091) Fix missing type='build' deps for cpio, m4, pkg-config and python in diffmark, faiss, fgsl, fipcheck, nbdkit, ncbi-magicblast and xcb-util-cursor
2021-09-21Rename 'variant_name' to 'variant' and document it in autotools build system ↵Harmen Stoppels3-20/+40
(#26064)
2021-09-20votca-* packages: add version 2021.2 (#26058)Christoph Junghans4-4/+10
2021-09-20New package: py-torchgeo (#26059)Adam J. Stewart1-0/+77
2021-09-20charliecloud package: add version 0.25 (#26073)Jordan Ogas1-1/+3
2021-09-20Include newer versions of UCX (#26072)adityakavalur1-4/+4
2021-09-20patch serf and scons to use #!/usr/bin/env python3 (#26062)Danny McClanahan4-0/+64
2021-09-20Add variants to FORM recipe (#25963)iarspider1-4/+16
2021-09-20added NOAA maintainers to ip package (#26055)Edward Hartnett1-2/+2
2021-09-20mfem and petsc: alter hypre dependencies (#25902)Olivier Cessenat2-3/+6
Hypre latest version 2.22.1 breaks MFEM and PETSc.
2021-09-20added NOAA software team to maintainers list (#26056)Edward Hartnett1-3/+4
2021-09-20p7zip: resolve gcc 10 conflict (#25676)Olivier Cessenat2-1/+14
Fix credit: Eric Brugger
2021-09-20strumpack: Update stand-alone test to use stage directory (#25751)Tamara Dahlgren1-30/+57
2021-09-20paraview: patch for version 5.9.1 with gcc 11.1.0 (#25887)kjrstory2-0/+52
* paraview: patch for version 5.9.1 with gcc 11.1.0 * Fix : blank line contains whitespace
2021-09-20gdb: new version v11.1 (#25920)Robert Underwood3-1/+15
2021-09-20New packages: py-imgaug (#25894)Jen Herting1-0/+31
* updates from sid * [py-imgaug] url -> pypi * [py-imgaug] added version 0.4.0 and fixed up dependencies * [py-imgaug] updated copyright Co-authored-by: Andrew Elble <aweits@rit.edu>
2021-09-20Allow setting variant name in AutotoolsPackage._activate_or_not (#26054)iarspider3-15/+31
2021-09-20 Fix R version (#26061)jacorvar1-1/+1
R version should be `3.0.0` instead of `3.00`.
2021-09-19added NOAA software team to maintainers list (#26057)Edward Hartnett1-4/+8
2021-09-19updating OmegaH to 9.34.1 (#26015)Vanessasaurus1-1/+1
2021-09-19Create SECURITY.mdTodd Gamblin1-0/+24
2021-09-19updating kokkos to 3.4.01 (#26013)Vanessasaurus1-1/+2
2021-09-19updating singularity to 3.8.3 (#26020)Vanessasaurus1-3/+3
Signed-off-by: vsoch <vsoch@users.noreply.github.com> Co-authored-by: vsoch <vsoch@users.noreply.github.com>
2021-09-19Fix R version (#26047)jacorvar1-1/+1
R version should be `3.0.0`, in contrast to `3.00`.
2021-09-18Add v1.6.0 to Benchmark (#25996)Alec Scott1-1/+2
2021-09-18omegah: add version 9.34.1 (#25828)Cameron Smith1-0/+1
2021-09-18Add v0.935 to Angsd (#25995)Alec Scott1-1/+2
2021-09-19Python: use platform-specific site packages dir (#25998)Adam J. Stewart3-3/+3
2021-09-18cmake: allow gcc on macOS for newer versions (#25994)Seth R. Johnson1-5/+4
2021-09-18librsb: add v1.2.0.10 (#26044)Michele Martone1-1/+2
2021-09-18FFTW: Fix OpenMP Build on macOS (#26039)Axel Huebl1-0/+11
2021-09-18updating siesta to 4.0.2 (#26021)Vanessasaurus1-2/+5
2021-09-18updating universal ctags to 5.2.0.xxxx (#26024)Vanessasaurus1-1/+2
2021-09-18updating sparsehash to 2.0.4 (#26023)Vanessasaurus1-1/+2
2021-09-18updating htslib to 1.13 (#26012)Vanessasaurus1-1/+2
2021-09-18updating nco to 5.0.1 (#26014)Vanessasaurus1-1/+2
2021-09-18updating graphviz to 2.49.0 (#26011)Vanessasaurus1-0/+1
2021-09-18updating veloc to 1.5 and cleaning up spacing (#26025)Vanessasaurus1-7/+7
2021-09-18updating cloc to 1.9.0 (#26009)Vanessasaurus1-1/+2
2021-09-18updating poppler (#26016)Vanessasaurus1-1/+2
2021-09-18updating raxml to 8.2.12 (#26018)Vanessasaurus1-1/+2
2021-09-18updating protobuf (Gooooogle!) to 3.18.0 (#26017)Vanessasaurus1-39/+40
2021-09-18updating samtools to 1.13 (#26019)Vanessasaurus1-1/+2
2021-09-18updating spades to 3.15.3 (#26022)Vanessasaurus1-1/+2
2021-09-18updating gatk to 4.2.2.0 (#26010)Vanessasaurus1-73/+21
2021-09-17Convert RAJA, CHAI and Umpire to CachedCMakePackages (#25788)David Beckingsale3-105/+191
* Switch Umpire to CMakeCachedPackage * Fix missing import * Correct tests option in Umpire * Switch RAJA to CachedCMakePackage * Convert CHAI to CachedCMakePackage * Corrections in RAJA * Patches in Umpire & RAJA for BLT target export * Fixup style * Fixup incorrect use of cmake_cache_string
2021-09-17update tutorial version of hdf5 (#25368)Chris White5-117/+417
2021-09-17Bootstrap should search for compilers after switching config scopes (#26029)Massimiliano Culpo6-47/+80
fixes #25992 Currently the bootstrapping process may need a compiler. When bootstrapping from sources the need is obvious, while when bootstrapping from binaries it's currently needed in case patchelf is not on the system (since it will be then bootstrapped from sources). Before this PR we were searching for compilers as the first operation, in case they were not declared in the configuration. This fails in case we start bootstrapping from within an environment. The fix is to defer the search until we have swapped configuration.
2021-09-17Bump reframe (#25970)Harmen Stoppels1-0/+1
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