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2019-03-21typo in documentation (#10976)Shahzeb Siddiqui1-3/+3
2019-03-21add eigen v3.3.7 (#10955)Stephen McDowell1-0/+1
2019-03-21Minor commentary correction, TCL -> lmod (#10951)George Hartzell1-1/+1
2019-03-21prevent UnboundLocalError when sourcing files (#10950)Stephen McDowell1-0/+1
Patch extracted from #7536 courtesy of @mgsternberg
2019-03-20update R to v3.5.3 (#10928)Patrick Schratz1-0/+1
* update R to v3.5.3
2019-03-20mpich: Do not use libfabric@1.7: with ch3 ofi netmod (#10919)Michael Kuhn1-0/+3
2019-03-20pkgconf: add 1.6.0 (#10942)Michael Kuhn1-0/+1
2019-03-20Update GMSH to 4.2.2 with OpenMP variant (#10914)bfovet1-3/+16
2019-03-20saga-gis: new versions up to 7.3.0 (#10922)Patrick Schratz1-1/+4
2019-03-20gettext: fix dependency type of xz (#10935)Denis Davydov1-1/+1
2019-03-20added yara (#10901)sknigh1-0/+21
2019-03-20gromacs: make sure cuda support is disabled when cuda=False (#10936)fcannini1-0/+2
* abinit: Fix building with hdf5/netcdf. * gromacs: Fix attempt to build with cuda support when 'cuda=False' If for some reason there's a cuda toolkit installed by other means, (i.e. not by spack) cmake will still try to build with cuda support, even though 'cuda=False' is the default of the spec. * Revert "abinit: Fix building with hdf5/netcdf." This reverts commit e16f725e37b91193fe519b1821446c76ab551928. This should not be here.
2019-03-20libfabric: add 1.6.2 (#10918)Michael Kuhn1-0/+1
2019-03-20git: add version 2.21.0 (#10937)Matthias Diener1-0/+5
2019-03-20strace: add 5.0 (#10940)Michael Kuhn1-0/+1
2019-03-20libeatmydata: new package (#10941)Michael Kuhn1-0/+24
2019-03-19Fix help text for --no-checksum. (#10932)Chris Green1-1/+1
2019-03-19Branson: provide new versions. (#10926)Kelly (KT) Thompson1-4/+11
* Branson: provide new versions. + Also update dependencies (newer version have fewer dependencies). * fix style issue
2019-03-19Draco: add variants (#10925)Kelly (KT) Thompson1-9/+17
* Draco: add variants + This package has many optional build dependencies that were not registered in older versions of this recipe. I've added (and tested) this more complete list of optional dependencies: parmetis, superlu-dist, qt. * fix style issues
2019-03-19added checksum for new bowtie2 version (#10930)Owen Solberg1-0/+1
2019-03-18cabana: cuda backend (#10660)Christoph Junghans1-1/+5
2019-03-16redis: new package (#10915)Massimiliano Culpo1-0/+35
Added versions from 4.0.11 to 5.0.3 closes #9180
2019-03-15hpcviewer: new package (#10878)Mark W. Krentel2-1/+85
* hpcviewer: new package Add binary package for hpcviewer and hpctraceviewer for the Rice hpctoolkit on Linux x86_64, ppc64 and ppc64le. * ibm-java: add property 'home' so that spec['java'].home will work. * Flake * More flake. * Test that the version, machine type pair exists before using it in the sha dictionaries so that 'spack info' doesn't crash on unsupported configurations.
2019-03-15New package: mariadb-c-client (#7729)Chris Green3-0/+66
* mariadb-c-client is a new package using the distinct, LGPL, MySQL-compatible client library from mariadb.com. It provides the virtual package mariadb-client * mariadb is recorded as a provider of the mariadb-client virtual * The mysql-client virtual package is also added, and mariadb-c-client is recorded as a provider for it
2019-03-15Add latest version and missing dependencies of MySQL (#10904)Adam J. Stewart1-4/+24
* Add latest version and missing dependencies of MySQL * m4 only needed on solaris
2019-03-15py-espressopp: add v2.0.2 (#10909)Christoph Junghans1-0/+1
2019-03-15cmake: add version 3.14.0 (#10908)Matthias Diener1-0/+1
2019-03-15Add ladot package (#10905)Adam J. Stewart1-0/+28
2019-03-14Ensure that every package has a description (#10896)Adam J. Stewart13-14/+31
2019-03-14Support VISUAL environment variable for editing. (#10898)Chris Green1-20/+26
If the user has set the environment variable VISUAL, it will be used in preference to EDITOR for all Spack editing activities. If VISUAL is not set or fails (perhaps due to a lack of graphical editing capabilities),EDITOR will be used instead. We fall back to one of several common editors if neither bears fruit. This feature has been tailored to: * Provide identical behavior to the previous implementation in the case that VISUAL is not set. * Not require any change to code utilizing the editor feature. * Follow usual UNIX behavior concerning VISUAL and EDITOR.
2019-03-14charliecloud: added version 0.9.8 (#10900)Jordan Ogas1-0/+1
2019-03-14cppunit: support cxxstd. (#10888)Chris Green1-0/+12
2019-03-14libxaw: added version 1.0.12 (#10591)Elizabeth Fischer1-0/+1
2019-03-14py-pybigwig: needs curl at link time (#10892)Levi Baber1-1/+1
2019-03-14sundials: add new version (4.1.0) (#10890)Cody Balos1-0/+1
2019-03-13QMCPACK More CUDA Fixes (#10864)Nichols A. Romero1-2/+8
* Throw InstallError if more than one GPU architecture is passed to cuda_arch. Previous cuda_arch test was not actually working because comparison with none string was on the cuda_arch list instead of the first entry of the list. * Removing redundant cuda_arch statement.
2019-03-13py-treehash: Create new package (#10872)Eric Martin1-0/+16
2019-03-13revbayes: new version (#10873)Levi Baber1-2/+4
2019-03-13libplist, libusbmuxd: Fix pkgconfig dependency (#10876)Michael Kuhn2-2/+2
pkgconfig is the correct virtual provider.
2019-03-13cubelib, cubew: Add missing pkgconfig dependency (#10875)Michael Kuhn2-0/+2
2019-03-13mpich: Add patch to fix node list parsing (#10870)Michael Kuhn1-0/+7
mpich@3.3 introduced a new regex-based function for node list parsing that does not recognize hostnames without a dash properly.
2019-03-13py-biomine: new package (#10868)Eric Martin1-0/+20
2019-03-13help2man: Add version 1.47.8 and perl runtime dependency (#10862)Eric Martin1-1/+2
2019-03-13py-advancedhtmlparser: new package (#10867)Eric Martin2-0/+38
2019-03-12fqtrim: Create new package (#10861)Eric Martin1-0/+25
2019-03-12Fix mysqldb1 (#9978)David Hows2-2/+17
* Update package.py * Add MYSQL Package file * Fixes for linter
2019-03-12New package: py-mysql-connector (#10327)Elizabeth Fischer2-0/+48
* New package: py-mysql-connector * Fixed docstring * 1. Determined that py-setuptools was not needed at all, so removed. 2. Added py-protobuf. Docs seem to imply that only C protobuf library is required; however, the Python setup.py says differently, and some Python code seems to reference protobuf too. I don't know why this worked for me, but it looks like including py-protobuf is the right thing to do. * Applied solution detailed in: https://github.com/mysql/mysql-connector-python/pull/9 Uncommenting this patch will make `error: option --single-version-externally-managed not recognized` reappear. * Clean up / reorder lines * flake8
2019-03-12Do not use `string` module to be compatible with python 3 (#248) (#10667)Tristan Carel1-3/+2
`string.find` is not part of Python 3 anymore.
2019-03-12varscan: set VARSCAN_HOME variable to jar file location (#10744)Eric Martin1-1/+1
2019-03-12py-pytables: Add hdf5 1.10.x support for versions above 3.4.0 (#10746)Eric Martin1-2/+3
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