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2020-04-21Phist int64 variant (#16209)jthies2-9/+59
* phist: add int64 variant and resulting conflicts and dependencies * phist: use Trilinos TPLs as soon as they are in the spec, not just if +trilinos isexplicitly set and remove a redundant depends-statement * phist: use int as gotype for Trilinos dependency if ~int64 * phist: new version 1.9.0 * phist: remove trailing whitespace * phist: updated checksum (version tag was moved)
2020-04-21Add new package: cmockery (#16225)darmac1-0/+27
2020-04-21Fix: Flex Reconfigure (#16194)Axel Huebl1-0/+5
* Fix: Flex Reconfigure Learn the `flex` package how to reconfigure itself when needed. Fix #11551 Co-authored-by: Andrew W Elble <aweits@rit.edu> * Autoreconf: only when actually desired Co-authored-by: Andrew W Elble <aweits@rit.edu>
2020-04-21catch2 2.12.1 (#16211)Andrew Gaspar1-0/+1
2020-04-21Doc: Conflict Msg Pkg Guide (#16201)Axel Huebl1-3/+7
Document the nice `msg=` argument in conflicts. Super useful for less generic conflict guidance.
2020-04-21Updated the 'opengl' package to include all older versions of the library. ↵Joseph Ciurej1-0/+11
(#16219)
2020-04-21PyTorch: add 1.5.0 (#16212)Adam J. Stewart1-0/+2
2020-04-21py-tap-py: Add 3.0 and 2.6.2 (#16169)Michael Kuhn1-7/+11
2020-04-21Add new package: sgpp (#15961)Gregor Daiß5-0/+421
* sgpp: Added recipe * sgpp: Removed maintainer and updated patch * sgpp: Added more conflicts * sgpp: Added conflicts for older combigrid versions * sgpp: Added one more maintainer * sgpp: Add version 3.3.0 and sane defaults * sgpp: Better description and c++11 conflicts * sgpp: Updated maintainers * sgpp: Fix flake8 errors * sgpp: Fix dependencies and minor issues - Added py-setuptools dependency - Fixed zlib link dependency - Added git url - Using spec.satisfies where appropriate * sgpp: Added testing to package * sgpp: Remove simd variant and use spec instead * sgpp: Remove java variant * sgpp: Small bugfixes * sgpp: Add datadriven patch and patch explanations
2020-04-21compiler wrappers: don't override -isystem with -I (#16077)Andrew W Elble2-14/+102
If the Spack compiler wrapper encounters any "-isystem" option, then when adding include directories for Spack dependencies, Spack will use "-isystem" instead of "-I". This prevents Spack-generated "-I" options from overriding the "-isystem" options generated by the build system. To ensure that build-system "-isystem" directories are searched first, Spack places all of its inserted "-isystem" directories after. The new ordering of -isystem includes is: * -isystem from build system (not system directories) * -isystem from Spack * -isystem from build system (for directories like /usr/include) The prior order of "-I" arguments is preserved (although as of this commit Spack no longer generates -I if -isystem is detected): * -I from build system (not system directories) * -I from Spack (only if there are no "-isystem" options) * -I from build system (for directories like /usr/include)
2020-04-21New package: sumo (#16096)Glenn Johnson4-4/+124
* New package: sumo This PR adds the sumo package, as well as the fox package as a dependency. It also updates and adds some fixes for openscenegraph. For fox, the patch is for the development version. That patch should not be necessary in future versions as it has been applied upstream. The stable version is 1.6.57 and is marked as preferred. This is the version needed for sumo. Added dependencies for openscenegraph as well as set constraints on qt versions. * Update var/spack/repos/builtin/packages/sumo/package.py I had intended to set this version constraint but somehow did not. Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Add dependency types to sumo recipe - googletest: 'test' - swig: 'build' - java: 'build', 'run' Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-04-21py-torchvision: add new version (#16208)Adam J. Stewart1-4/+7
2020-04-21gettext: Fix typo (#16206)Michael Kuhn0-0/+0
2020-04-21gettext: Fix typo (#16206)Michael Kuhn0-0/+0
2020-04-21gettext: Fix typo (#16206)Michael Kuhn1-1/+1
2020-04-21catch2: added v2.12 (#16207)Andrew Gaspar1-0/+1
2020-04-21qgis: Fix pkgconfig dependency (#16188)Michael Kuhn1-1/+1
2020-04-20gettext: add missing iconv dependency (#16193)Axel Huebl1-1/+3
`gettext` will pick up a random `iconv` dependency if not specified, which crashes python and its own builds on macOS.
2020-04-20votca-*: remove rc versions (#16197)Christoph Junghans5-20/+6
2020-04-20Add new package: sse2neon (#16168)darmac1-0/+23
2020-04-20Python: add latest Python 2 releases (#16191)Adam J. Stewart1-1/+3
2020-04-20Implemented +shared and +static_tools variants (#16105)G-Ragghianti1-5/+25
2020-04-20Add ppOpen-APPL/FDM and ppOpen-APPL/FDM-AT. (#16116)Toyohisa Kameyama5-0/+219
2020-04-20ppOpen-APPL/DEM-util: New package (#16120)Toyohisa Kameyama1-0/+48
2020-04-20Add new package: audacious (#16121)darmac1-0/+30
2020-04-20Add new package: bgpdump (#16122)darmac1-0/+21
2020-04-20Add new package: byacc (#16123)darmac1-0/+24
* Add new package: byacc * refine byacc info
2020-04-20Package Bonniepp adding sbin to PATH (#16124)Amjad Kotobi1-0/+4
2020-04-20rocksdb: Add 6.7.3 (#16189)Michael Kuhn1-3/+29
This also adds a shared variant, so we can build both the static and shared libraries at the same time. It also adds a pkg-config file.
2020-04-20pixman: Add 0.40.0 (#16190)Michael Kuhn1-0/+1
2020-04-20update package py-graphviz version (#16131)Amjad Kotobi1-0/+3
2020-04-20Add Acts v0.22 (#16141)Hadrien G1-0/+1
2020-04-20Add new package: codec2 (#16142)darmac1-0/+17
2020-04-20Add new package: libsamplerate (#16143)darmac1-0/+22
2020-04-20Add new package: collectd (#16144)darmac1-0/+21
2020-04-20Add new Package: accumulo (#16148)darmac1-0/+26
2020-04-20prism: new package at 4.5 (#16187)Justin S1-0/+43
2020-04-20python: Add 3.7.7 (#16170)Michael Kuhn1-1/+2
2020-04-20proj (#16175)Elizabeth Fischer1-0/+1
Co-authored-by: Elizabeth Fischer <elizabeth.fischer@alaska.edu>
2020-04-20glib (#16179)Elizabeth Fischer1-0/+5
Co-authored-by: Elizabeth Fischer <elizabeth.fischer@alaska.edu>
2020-04-20PyTorch: remove CUDA conflicts (#16136)Adam J. Stewart1-18/+0
2020-04-20autotools: remove FORCE_UNSAFE_CONFIGURE from docs, commands, code (#16145)Todd Gamblin8-23/+8
Since #16132, we've consolidated the setting of FORCE_UNSAFE_CONFIGURE to `autotools.py`, so we don't need to use it in packages like `coreutils`, in our commands, or in our container recipes. - [x] Remove FORCE_UNSAFE_CONFIGURE from packages - [x] Remove FORCE_UNSAFE_CONFIGURE from container recipes - [x] Remove FORCE_UNSAFE_CONFIGURE from `spack ci` command
2020-04-20Httpd: added package at v2.4.43 (#16152)darmac1-0/+35
2020-04-20ngmerge: added package at v0.3 (#16160)Glenn Johnson1-0/+21
2020-04-19Typo: vew -> view (#16155)George Hartzell1-1/+1
2020-04-19Cython: add new version (#16159)Adam J. Stewart1-1/+3
2020-04-19NumPy: add new version (#16158)Adam J. Stewart1-1/+2
2020-04-18FrontFlow/Red: New Package. (#15965)Toyohisa Kameyama3-0/+195
* FrontFlow/Red: New Package. * fix comment. use libs.ld_flags. * typo fix. * typo fix.
2020-04-18CEED v3.0 release (#15500)Veselin Dobrev17-162/+470
* [mfem] A few updates: add 'strumpack' variant; add 'zlib' variant (same as 'gzstream'); fix optmization flag for v4.0. * [mfem] flake8 fix * [mfem] Add version 4.1 * [mfem] Add/tweak some 'conflicts' directives. * [gslib] Add new release versions + 'develop' version. * [petsc] Restrict hdf5 version to <= 1.10.99 since 1.12.0 fails * [metis] Use the original metis url for v4.0.3. * [conduit] Remove restrictions to the used hdf5 variant to allow building with other packages that use hdf5, e.g. petsc. * [mfem] Few updates: * Replace the 'gzstream' variant with 'zlib' variant. * Do not add system library paths with -L flags. * Allow '+pumi+shared' variant. * Update the 'test_builds.sh' script. * [occa] Add version 1.0.9. * [mfem] Some OCCA and RAJA updates. * [gslib] Fix the build for new versions of the library. * [mfem] Add 'gslib' variant for GSLIB. * [mfem] Add 'cuda' variant. * [mfem] Add 'libceed' variant + a few more tweaks. * [mfem] Add 'umpire' variant. * [ceed] Add a draft for v3.0. Not tested. Just made sure that concretization works for 'ceed' and 'ceed+cuda'. * [nek] Fix Nek5000/NekCEM * [nek] Add Nek5000-v19 & polishing Nek packages * [flake8] Fix flake8 failure * petsc: use of HDF5 does not care about +hl+fortran * [petsc] Temporarily allow any hypre version with petsc@develop. [ceed] Remove the requirement for hypre@develop. * [libceed] Do not explicitly set NVCCFLAGS for v0.5 and later. * [laghos] Add version 3.0, pointing to dev branch for now. Do not set CXX at the make command line. Simplify the dependecy directives a little. [ceed] Use laghos v3.0 for ceed v3.0.0. * [laghos] Keep the injection of CXX in the makefile for laghos versions <= 2.0. * [nekcem] Recovert hash-versions used by older versions of the 'ceed' package. * [occa] Disable hip autodetection because it fails on some machines. * [laghos] Update v3.0 with the actual release source. * [suite-sparse] Explicitly add the c11 flag to CFLAGS. * Update package.py (#15749) * [magma] Add forgotten specification of the 'cuda_arch' variant. * [ceed] Use magma v2.5.3 for ceed v3.0. * libceed-0.6 * mfem: depend on libceed 0.6:, not 0.6.0: * [libceed] Add 'magma' variant -- enable MAGMA backend. * [ceed] In v3.0, use '+magma' variant of libceed when cuda is enabled. * Initial package for Remhos (needs to be updated with actual sha256 * Adding Remhos to CEED-3.0, for now @develop * petsc: add 3.13.0 (using petsc-lite) and 3.12.5 * ceed: update to petsc@3.13.0:3.13.99 * Temporary fix * [nekcem] Add hash-version for ceed v3.0. * [nek5000] Simplify source urls. * [nektools] Use the same sources and versions as in nek5000. * [ceed] Update Nek-related package versions. * libceed: add v0.6 portabilty fix * libceed: better v0.6 portabilty fix * Adding Remhos 1.0 release in CEED-3.0 * Updating hash for Remhos-1.0 * [petsc] Add cuda variant. * [libceed] Flake8 fix. * [petsc] Add cuda variant. * [ceed] Fix the OCCA version to 1.0.9. Enable petsc+cuda when compiling ceed@3.0.0+cuda. * nek5000: fix python 2.7+ syntax * [laghos] Fix testing. * [remhos] Fix testing. * [remhos] For testing use the 'tests' target instead of 'test'. * Add/update the maintainers for ceed, libceed, mfem, laghos, and remhos. * [ceed] Remove unnecessary dependencies. * libceed: activate AVX when supported Co-authored-by: Thilina Rathnayake <thilinarmtb@gmail.com> Co-authored-by: Jed Brown <jed@jedbrown.org> Co-authored-by: Stan Tomov <tomov@eecs.utk.edu> Co-authored-by: Tzanio <tzanio@llnl.gov>
2020-04-18autotools: set FORCE_UNSAFE_CONFIGURE to 1 in autotools.py (#16132)Diego Magdaleno1-0/+15
This commit sets the `FORCE_UNSAFE_CONFIGURE` environment variable to 1 in autotools builds. We see a lot of builds popping up and complaining about `FORCE_UNSAFE_CONFIGURE`. This behavior is not actually part of `autoconf` per se. It comes from this patch to `mknod.m4`, which is used by a lot of autoconf builds: * https://lists.gnu.org/archive/html/bug-gnulib/2010-07/msg00282.html Which originated from this problem that someone had on AIX: * https://lists.gnu.org/archive/html/bug-gnulib/2010-07/msg00279.html The gist of the problem seems to be that they want to check whether `mknod` can do something as root, but instead of checking whether they're running as root and using `su` or something to test this, they just made it harder to run `configure` as root. This seems very ad hoc and this is one of many checks that are run as root in `configure`. Many of them run before this check, so it's not clear that the `FORCE_UNSAFE_CONFIGURE` thing is even preventing bad things from happening. So: 1. This only happens in `autotools` builds, so we should go ahead and put it into `autotools.py` instead of in the global build environment, and 2. The variable does too little and provides a false sense of security in the first place, so we'll just disable it and avoid the nuisance. If we really feel strongly about this we can put some warnings in Spack about running as root, but at the top level, not in the middle of an already running script like `configure`.
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