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2021-02-07Added Conflict for macsio@1.1 ~mpi (#21513)Robert Pavel1-0/+2
Added conflict for macsio@1.1~mpi after investigating source code. As of 1.1 tag macsio does not properly guard out MPI commands. This is verified as corrected in @develop
2021-02-07Adding NVIDIA HPC SDK 21.1 (#21514)Filippo Spiga1-0/+4
2021-02-07Fixed Typo in Examinimd Spackage (#21515)Robert Pavel1-1/+1
2021-02-07collectd: add test dependency (#21522)darmac1-0/+1
2021-02-07mercury variant to control checksumming feature (#21467)Phil Carns1-1/+3
2021-02-07mpifileutils: add v0.11 (#21432)Adam Moody1-0/+11
2021-02-07gobject-introspection: enable gobject option in cairo (#21404)darmac1-1/+1
2021-02-07Removed boost dependence and other outdated bits (#21394)kkauder1-7/+1
2021-02-07aspcud: update version to fix build error (#21521)darmac1-1/+2
2021-02-07r-rmariadb: add mariadb library path (#21406)darmac2-0/+22
2021-02-06trilinos: @develop requires cxxstd>=14 (#21519)eugeneswalker1-0/+1
2021-02-05Add package: py-fava (#21275)Jean-Paul Pelteret1-0/+44
* Add package: py-beancount-fava * Rename package; fixes * Fixes * Cleanup; simplify regex used to ignore files
2021-02-05mxnet: convert to CMakePackage (#21385)Adam J. Stewart8-243/+155
* mxnet: convert to CMakePackage * Package isn't installed yet, can't find libs * Fix bug with GCC 8+ and CUDA 10 on PowerPC * Add space * Add patch to fix cmake cuda flags * Space no longer needed * Add patch to fix OpenBLAS linking * Add missing CMake flag * Fix env set, default to Distribution * Add new version, patch
2021-02-05let intel consider cray-mpich as mpich (#21512)albestro1-0/+1
2021-02-05py-python-benedict: new package (#21501)Bryan Herman1-0/+31
* added py-python-benedict recipe * Update var/spack/repos/builtin/packages/py-python-benedict/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-02-05gromacs: added v2021 (#21473)Evan Bollig1-2/+9
Fixed broken gromacs builds. gmxapi requires mpicxx to link properly Gromacs requires mpicc override on CMAKE_C_COMPILER, not MPI_C_COMPILER
2021-02-04New versions of libfabric (1.11.1, 1.11.2) (#21496)Evan Bollig1-0/+2
2021-02-04libjwt: Added openssl to resolve broken CICD pipeline (#21443)Evan Bollig1-0/+2
2021-02-04Disabled Non-Existant miniamr~mpi Variant (#21495)Robert Pavel1-10/+4
Identified build error for miniamr~mpi. Upon further investigation, the MPI dependencies are hard coded in that tag
2021-02-04lammps: Add support for a number of new LAMMPS add-on packages (#21494)Tom Payerle1-7/+44
mliap user-adios user-awpmd user-bocs user-cgsdk user-colvars user-diffraction user-dpd user-drude user-eff user-fep user-manifold user-mesodpd user-mesont user-mgpt user-mofff user-phonon user-plumed user-ptm user-qtb user-reaction user-sdpd user-smd user-smtbq user-sph user-tally user-uef user-yaff
2021-02-04sundials: add new version (#21488)Cody Balos1-0/+1
2021-02-04superlu: Add e4s testsuite-inspired smoke test (#21230)Sergei Shudler1-1/+78
2021-02-04config: (darwin only) change prefix of external libuuid (#21480)Laurent Aphecetche1-1/+1
2021-02-04py-xarray: add v0.16.2 (#21489)Adam J. Stewart1-3/+8
2021-02-04[pkg][new version] Provide draco@7.9.1 (#21486)Kelly (KT) Thompson1-1/+7
+ Provide optional variant `pythontools` (default False) that adds a run-time dependency on `py-matplotlib`. + Latest versions require `cmake@3.18:` to support cuda features. + Enable a cmake option that forcibly disables qt support. Previously, draco would enable qt support if it was available in the local build environment (outside of spack).
2021-02-04update: update pfunit releases (#21485)Kurt Sansom1-0/+3
2021-02-04parallelio: add necessary resources (#21477)m-shunji1-0/+10
Co-authored-by: Toyohisa Kameyama <kameyama@riken.jp>
2021-02-04Provide eospac-6.4.2. (#21476)Kelly (KT) Thompson1-0/+2
2021-02-04Fix usage of PythonPackage.test outside of PythonPackage (#20555)Adam J. Stewart3-8/+72
2021-02-04py-numpy: Fix for new version of numpy with Fujitsu compiler. (#21479)Tomoki, Karatsu6-34/+34
* Change the version to apply patches. * Change the name of the Fujitsu compiler to 'fujitsu' in numpy.
2021-02-04Python: add maintainer(s) (#21125)Adam J. Stewart4-1/+9
* Python: add maintainer(s) * Fix unit tests
2021-02-04py-mypy: add v0.800 (#21386)Adam J. Stewart2-2/+3
2021-02-04Graphviz: don't build ghostscript when ~ghostscript (#19615)Seth R. Johnson1-19/+25
* graphviz: Remove ghostscript requirement when ~ghostscript * Add doc variant and patch for 2.44.1 * Patch does not apply * Update graphviz versions, using archives rather than git hash * Complete implementation of doc variant * Fix typo
2021-02-04dbcsr: add opencl as a third backend (#21468)Harmen Stoppels1-6/+23
2021-02-04spack external find: allow to search by tags (#21407)Massimiliano Culpo15-12/+76
This commit adds an option to the `external find` command that allows it to search by tags. In this way group of executables with common purposes can be grouped under a single name and a simple command can be used to detect all of them. As an example introduce the 'build-tools' tag to search for common development tools on a system
2021-02-03py-flufl-lock: new recipe (#21334)Andrew-Dunning-NNL1-0/+24
* py-flufl-lock: new recipe * py-flufl-lock: fix typing extension when no longer provisional
2021-02-04link gettext properly for git when gettext does not provide libintl (#21472)Greg Becker1-2/+3
2021-02-03intel-oneapi-compilers/mpi: add module support (#20808)Frank Willmore2-0/+48
Facilitate running intel-oneapi-mpi outside of Spack (set PATH, LD_LIBRARY_PATH, etc. appropriately). Co-authored-by: Robert Cohn <rscohn2@gmail.com>
2021-02-03intel-oneapi-compilers: add to LD_LIBRARY_PATH so that it finds libimf.so ↵Frank Willmore1-22/+31
(#20717) * add to LD_LIBRARY_PATH so that it finds libimf.so * amrex: fix handling of CUDA arch (#20786) * amrex: fix handling of CUDA arch * amrex: fix style * amrex: fix bug * Update var/spack/repos/builtin/packages/amrex/package.py * Update var/spack/repos/builtin/packages/amrex/package.py Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja> * ecp-data-vis-sdk: Combine the vis and io SDK packages (#20737) This better enables the collective set to be deployed togethor satisfying eachothers dependencies * r-sf: fix dependency error (#20898) * improve documentation for Rocm (hip amd builds) (#20812) * improve documentation * astyle: Fix makefile for install parameter (#20899) * llvm-doe: added new package (#20719) The package contains duplicated code from llvm/package.py, will supersede solve. * r-e1071: added v1.7-4 (#20891) * r-diffusionmap: added v1.2.0 (#20881) * r-covr: added v3.5.1 (#20868) * r-class: added v7.3-17 (#20856) * py-h5py: HDF5_DIR is needed for ~mpi too (#20905) For the `~mpi` variant, the environment variable `HDF5_DIR` is still required. I moved this command out of the `+mpi` conditional. * py-hovorod: fix typo on variant name in conflicts directive (#20906) * fujitsu-fftw: Add new package (#20824) * pocl: added v1.6 (#20932) Made version 1.5 or lower conflicts with a64fx. * PCL: add new package (#20933) * r-rle: new package (#20916) Common 'base' and 'stats' methods for 'rle' objects, aiming to make it possible to treat them transparently as vectors. * r-ellipsis: added v0.3.1 (#20913) * libconfig: add build dependency on texinfo (#20930) * r-flexmix: add v2.3-17 (#20924) * r-fitdistrplus: add v1.1-3 (#20923) * r-fit-models: add v0.64 (#20922) * r-fields: add v11.6 (#20921) * r-fftwtools: add v0.9-9 (#20920) * r-farver: add v2.0.3 (#20919) * r-expm: add v0.999-6 (#20918) * cln: add build dependency on texinfo (#20928) * r-expint: add v0.1-6 (#20917) * r-envstats: add v2.4.0 (#20915) * r-energy: add v1.7-7 (#20914) * r-ellipse: add v0.4.2 (#20912) * py-fiscalyear: add v0.3.0 (#20911) * r-ecp: add v3.1.3 (#20910) * r-plotmo: add v3.6.0 (#20909) * Improve gcc detection in llvm. (#20189) Co-authored-by: Tom Scogland <tom.scogland@gmail.com> Co-authored-by: Thomas Green <ca-tgreen@gw4a64fxlogin00.head.gw4.metoffice.gov.uk> * hatchet: updated urls (#20908) * py-anuga: add new package (#20782) * libvips: added v8.10.5 (#20902) * libzmq: add platform conditions to libbsd dependency (#20893) * r-dtw: add v1.22-3 (#20890) * r-dt: add v0.17 (#20889) * r-dosnow: add v1.0.19 (#20888) * add version 1.0.16 to r-doparallel (#20886) * add version 1.3.7 to r-domc (#20885) * add version 0.9-15 to r-diversitree (#20884) * add version 1.3-3 to r-dismo (#20883) * add version 0.6.27 to r-digest (#20882) * add version 1.5 to r-rngtools (#20887) * add version 1.5.8 to r-dicekriging (#20877) * add version 1.4.2 to r-httr (#20876) * add version 1.28 to r-desolve (#20875) * add version 2.2-5 to r-deoptim (#20874) * add version 0.2-3 to r-deldir (#20873) * add version 1.0.0 to r-crul (#20870) * add version 1.1.0.1 to r-crosstalk (#20869) * add version 1.0-1 to r-copula (#20867) * add version 5.0.2 to r-rcppparallel (#20866) * add version 2.0-1 to r-compositions (#20865) * add version 0.4.10 to r-rlang (#20796) * add version 0.3.6 to r-vctrs (#20878) * amrex: add ROCm support (#20809) * add version 2.0-0 to r-colorspace (#20864) * add version 1.3-1 to r-coin (#20863) * add version 0.19-4 to r-coda (#20862) * add version 1.3.7 to r-clustergeneration (#20861) * add version 0.3-58 to r-clue (#20860) * add version 0.7.1 to r-clipr (#20859) * add version 2.2.0 to r-cli (#20858) * add version 0.4-3 to r-classint (#20857) * add version 0.1.2 to r-globaloptions (#20855) * add version 2.3-56 to r-chron (#20854) * add version 0.4.10 to r-checkpoint (#20853) * add version 2.0.0 to r-checkmate (#20852) * add version 1.18.1 to r-catools (#20850) * add version 1.2.2.2 to r-modelmetrics (#20849) * add version 3.0-4 to r-cardata (#20847) * add version 1.0.1 to r-caracas (#20846) * r-lifecycle: new package at v0.2.0 (#20845) * add version 3.0-10 to r-car (#20844) * add version 3.4.5 to r-processx (#20843) * add version 1.5-12.2 to r-cairo (#20842) * add version 0.2.3 to r-cubist (#20841) * add version 2.6 to r-rmarkdown (#20838) * add version 1.2.1 to r-blob (#20819) * add version 4.0.4 to r-bit (#20818) * add version 2.4-1 to r-bio3d (#20816) * add version 0.4.2.3 to r-bibtex (#20815) * add version 3.1-4 to r-bayesm (#20807) * add version 1.2.1 to r-backports (#20806) * add version 2.0.3 to r-argparse (#20805) * add version 5.4-1 to r-ape (#20804) * add version 0.8-18 to r-amap (#20803) * r-pixmap: added new package (#20795) * zoltan: source code location change (#20787) * refactor path logic * added some paths to make compilers and libs discoverable * add to LD_LIBRARY_PATH so that it finds libimf.so and cleanup PEP8 * refactor path logic * adding paths to LIBRARY_PATH so compiler wrappers will find -lmpi * added vals for CC=icx, CXX=icpx, FC=ifx to generated module * back out changes to intel-oneapi-mpi, save for separate PR * Update var/spack/repos/builtin/packages/intel-oneapi-compilers/package.py path is joined in _ld_library_path() Co-authored-by: Robert Cohn <rscohn2@gmail.com> * set absolute paths to icx,icpx,ifx * dang close parenthesis Co-authored-by: Robert Cohn <rscohn2@gmail.com> Co-authored-by: mic84 <mrosso@lbl.gov> Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja> Co-authored-by: Chuck Atkins <chuck.atkins@kitware.com> Co-authored-by: darmac <xiaojun2@hisilicon.com> Co-authored-by: Danny Taller <66029857+dtaller@users.noreply.github.com> Co-authored-by: Tomoyasu Nojiri <68096132+t-nojiri@users.noreply.github.com> Co-authored-by: Shintaro Iwasaki <siwasaki@anl.gov> Co-authored-by: Glenn Johnson <glenn-johnson@uiowa.edu> Co-authored-by: Kelly (KT) Thompson <KineticTheory@users.noreply.github.com> Co-authored-by: Henrique Mendonça <henrique@users.noreply.github.com> Co-authored-by: h-denpo <57649496+h-denpo@users.noreply.github.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Thomas Green <tomgreen66@hotmail.com> Co-authored-by: Tom Scogland <tom.scogland@gmail.com> Co-authored-by: Thomas Green <ca-tgreen@gw4a64fxlogin00.head.gw4.metoffice.gov.uk> Co-authored-by: Abhinav Bhatele <bhatele@cs.umd.edu> Co-authored-by: a-saitoh-fj <63334055+a-saitoh-fj@users.noreply.github.com> Co-authored-by: QuellynSnead <quellyn@lanl.gov>
2021-02-03py-atpublic: new recipe (#21332)Andrew-Dunning-NNL1-0/+22
2021-02-03acts: Add version 5.0 (#21466)Hadrien G1-0/+1
2021-02-03Set the variant to alway be true since it is requires cuda. (#21358)Brian Van Essen1-0/+1
2021-02-03concretizer: simplify "fact" method (#21148)Massimiliano Culpo1-23/+5
The "fact" method before was dealing with multiple facts registered per call, which was used when we were emitting grounded rules from knowledge of the problem instance. Now that the encoding is changed we can simplify the method to deal only with a single fact per call.
2021-02-03adding environment to OneMKL packages so that examples will build (#21377)Frank Willmore2-0/+42
2021-02-03sundials: expose monitoring build option (#21429)Josh Essman1-0/+10
2021-02-03Add cuda as opencl provider (#21464)Harmen Stoppels1-0/+3
2021-02-03http-load: Fix checksum error (#21459)Tomoyasu Nojiri1-4/+4
2021-02-03http-post: Fix checksum error (#21460)Tomoyasu Nojiri1-4/+4
2021-02-03http-get: Fix checksum error (#21458)Tomoyasu Nojiri1-4/+4
2021-02-03http-ping: Fix checksum error (#21457)Tomoyasu Nojiri1-4/+4
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