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This allows packages to override the global connect_timeout.
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This allows us to support higher-level concepts such as 'cookie' and
'timeout' without users having to specify curl options.
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connect_timeout can be used to increase the time Spack waits for the
server to answer. This can be used to work around slow connections or
servers.
Fixes #14700
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* CudaPackage: add support for Tesla K80 and older CUDA
* Flake8 fixes
* Fix cuda_arch when no arch is set
* Fine-tune cuda_arch=37,50 supported CUDA versions
* CUDA 6.5+ supports SM_37
* Add @svenevs as a maintainer
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The py-pomegranate package is a dependency of py-cnvkit
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This PR adds py-pymc3 and py-arviz as a dependency.
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Details about ILP64 support: `INTERFACE64=1` are described on the [ARPACK-NG GitHub website](https://github.com/opencollab/arpack-ng).
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Version 4.3.1 only works with Python3. Version 4.3.2 also works
with Python2. These constraints were not listed before and are added
by this commit.
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Also add dependency on py-cached-property
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The new build process, introduced in #13100 , relies on a spec's dependents in addition to their dependencies. Loading a spec from a yaml file was not initializing the dependents.
- [x] populate dependents when loading from yaml
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Also Adding conflict for SQLite and ADIOS2 for older TAU releases
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LLVM is the only package that explicitly sets the "termlib" variant
of ncurses and it specifies +termlib. ncurses defaults to ~termlib;
if a package depends on LLVM and ncurses, there is a concretizer bug
that incorrectly detects a constraint conflict (see #267). Setting
+termlib as the default is a stopgap measure to avoid this conflict.
If other packages were to explicitly request ~termlib in the future,
the same issue would come up again (and could not be resolved by
adjusting the default of "termlib").
Setting +termlib on ncurses moves some symbols into a separate
"libtinfo". Not all packages may be able to detect libtinfo properly
so may require an update; vim, samtools, and libedit have been
updated to use ncurses+termlib (in the case of libedit, the only
necessary action was to add a newer version where the build system
was updated to check libtinfo).
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* Flake8 OK
* Update var/spack/repos/builtin/packages/py-basis-set-exchange/package.py
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/py-basis-set-exchange/package.py
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
* Added missing dependencies proposed by @adamjstewart
* Without py-versioneer
* Added py-versioneer
* Python2 for bse
* Python build error
* Update var/spack/repos/builtin/packages/py-basis-set-exchange/package.py
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
* Removed py-versioneer, according to @adamjstewart
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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This PR corrects a few minor things and adds a note about colorized
output.
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buildcaches. (#15090)
* Make -d directory a required option. Print messages about where buildcaches will be written.
* Add mutually exclusive required options
* spack commands --update-completion
* Apply @opadron's patch
* Update share/spack/spack-completion.bash
* Incorporate @opadron's suggestions
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* add --only option to buildcache create cmd
replaces the --no-deps option
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* remove catch-all exception handling in buildcache command
* fix test
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buildcaches on linux (#15192)
* Buildcache command: add install option -o/--otherarch
This will allow matching specs from other archs, for example
installing macOS buildcaches on linux hosts.
* spack commands --update-completion
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- When compiling qrupdate with `FFLAGS=-fdefault-integer-8` it can be perfectly used for larger problem dimensions.
- Improved the readability of the file with the added rules.
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and library paths. (#15189)
Setup package to use MPI the way Spack recommends, and remove extra iowrapper option from configure
Making flake happy
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Release notes: https://github.com/DrTimothyAldenDavis/SuiteSparse/releases/tag/v5.7.1
Version 5.7.0 was an incomplete release.
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* update flecsi and legion package.py
* comment out a conflict
* update to use extend
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args.specs is a list, which results in output like this:
```
eval `spack load --sh ['libxml2', 'xz']`
```
We want this instead:
```
eval `spack load --sh libxml2 xz`
```
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This change stores packages' configure arguments during build and makes
use of them while refreshing module files. This fixes problems such as in
#10716.
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* add new package : agrep
* agrep: move binary to bin/
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* Aded extra versions for OCaml
* Added maintainer
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The newer versions of SZ now uses CMake to build.
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* Update py-bx-python package
- add update to py-bx-python
- switch to pypi downloads
- set dependencies
* Update var/spack/repos/builtin/packages/py-bx-python/package.py
I had initially pulled version 0.8.6 and then updated that to 0.8.8 but missed the change in the python specs between those two versions.
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
* Fix version 0.7.4
- set dependency on python2
- add dependency on py-python-lzo
- add py-python-lzo package
- set py-numpy dependency to correspond to latest version that works
with python2
* Add constraint for py-six dependency
* Update var/spack/repos/builtin/packages/py-bx-python/package.py
Ah, I had that `when` clause in and then took it out as it did not seem to be needed. I guess it is always better to be more explicit.
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
* Remove py-numpy constraint
Let the concretizer catch the conflict with python2 and py-numpy
versions.
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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This PR depends on #15175
- add updated version
- set depedencies
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* add new package : batctl
* batctl: move binary to bin/
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* add new package : bubblewrap
* bubblewrap: remove some comment in package.py
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A generic python dependency is already added implicitly by the
PythonPackage class.
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* Fixes & additional variant(s) for HepMC3
* Syntax
* Restore recipe for HepMC2
* Remove FIXME
* Update package.py
* Apply suggestions from code review
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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* Mark silo+silex as requiring QT4
* Add missing readline dependency to silo
* Fix silo QT4 usage and verify silex works on mac
```
-- darwin-mojave-x86_64 / clang@11.0.0-apple --------------------
7gdcud4 silo@4.10.2+fortran~mpi patches=7b5a1dc2a0e358e667088d77e7caa780967fa8ea60be89c44986605df9990abe +pic+shared+silex
pk3wbwd hdf5@1.10.6~cxx~debug~fortran+hl~mpi+pic+shared+szip~threadsafe
slsy6ko libszip@2.1.1
xj36ejk zlib@1.2.11+optimize+pic+shared
u4662xx libx11@1.6.4
3lpe6j3 qt@4.8.7~dbus~examples~framework freetype=none ~gtk~opengl patches=03f9893882c63a9a9617d9ecab9caf80661c96df13f596a9b24fc4579490144a,a4f37427b34d88df6a6adc16e1e6c805087d4f3a7c658e1797450b0912fcbf5d,f17e0b5fb1f43bccadf7298533eca57294f4acab11ed83b176c61c441f745c19 ~phonon+shared~sql~ssl~tools~webkit
shdhdbh glib@2.56.3~libmount patches=c325997b72a205ad1638bb3e3ba0e5b73e3d32ce63b2d0d3282f3e3a2ff4663c tracing=none
msyeqht gettext@0.20.1+bzip2+curses+git~libunistring+libxml2+tar+xz
ysmjykg bzip2@1.0.8+shared
w354vrb libxml2@2.9.9~python
jg6ekuh libiconv@1.16
b7n722h xz@5.2.4
zbgxvxi ncurses@6.1~symlinks~termlib
2e6sifw tar@1.32
7yg7qah libffi@3.2.1
zg55iyu pcre@8.43~jit+multibyte+utf
zqrlxlz perl@5.30.0+cpanm+shared+threads
un7wzvl python@3.7.4+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations patches=210df3f28cde02a8135b58cc4168e70ab91dbf9097359d05938f1e2843875e57 +pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib
l4gxq46 expat@2.2.9~libbsd
3t4dwsv gdbm@1.18.1
h2bjtz2 readline@8.0
ugvknwc openssl@1.1.1d+systemcerts
hsmq6ou sqlite@3.30.1~column_metadata+fts~functions~rtree
lpfob23 icu4c@65.1 cxxstd=11
lf66vbr inputproto@2.3.2
afovyhg libjpeg-turbo@2.0.3
5dgw556 libmng@2.0.3 build_type=RelWithDebInfo
3z4lw2w lcms@2.9
flleuyu libtiff@4.0.10
67tigfp libpng@1.6.37
```
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Newer versions of LLVM provide a one-line command to set up LLDB code
signing. Now the build will abort only if this command fails.
https://lldb.llvm.org/resources/build.html#code-signing-on-macos
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