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2022-04-28Add BUILD_TESTING to standard CMake arguments (#30374)Frédéric Simonis1-0/+2
CTest determines whether to enable tests using the BUILD_TESTING variable. This should be used by projects to conditionally enable the compilation of tests. Spack knowns which packages have to run tests and can thus automatically define this variable.
2022-04-28Add checksum for py-poetry-core@1.0.8 (#30359)Andrea Valenzuela1-0/+1
Co-authored-by: aandvalenzuela <andrea.valenzuela.ramirez@cern.ch>
2022-04-28Add checksum for py-more-itertools@8.12.0 and fix python dependency (#30325)Andrea Valenzuela1-0/+3
* Add checksum for py-more-itertools@8.12.0 and fix python dependency * Package version 8.11.0 is the only version that requires python 3.6+ Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Add reference to python 3.6 dependency Co-authored-by: aandvalenzuela <andrea.valenzuela.ramirez@cern.ch> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-04-28py-quantities: add versions from 0.12.2-13.0 (#28586)Andrew Davison1-2/+19
* py-quantities: add versions from 0.12.2-13.0 * Attempt to fix the version specification * add maintainer, implement suggestions from reviewer
2022-04-28Ascent/Conduit: re-add fortran compiler that was mistakenly removed (#30351)Chris White2-0/+5
2022-04-28build_env/test_env: add concretizer args (#30289)Greg Becker2-2/+4
2022-04-28install --overwrite: use rename instead of tmpdir (#29746)Harmen Stoppels4-54/+45
I tried to use --overwrite on nvhpc, but nvhpc's install size is 16GB. Seems better to do os.rename in the same directory than moving the directory to `/tmp`. - [x] install --overwrite: use rename instead of tmpdir - [x] use tempfile
2022-04-27Add spiral fftx (#28583)Patrick Broderick7-45/+244
* add fftx package; rename spiral to spiral-software and add spiral-package-* * Update year in copyright notice * Add package description to FFTX/package.py * Changes to package files for SPIRAL & FFTX for PR * Update package definitions * remove unnecessary lines
2022-04-27Add HDF5 version 1.12.2. (#30348)Larry Knox1-0/+1
2022-04-27llvm: Add 14.0.1 14.0.2 (#30347)Paul R. C. Kent1-0/+2
2022-04-28Add Python `chmod +x` equivalent in `fpm` package (#30342)Wileam Y. Phan1-1/+9
2022-04-27z3: New version 4.8.16 (#30328)Erik Schnetter1-0/+2
2022-04-27tcsh: add version 6.24.00 (#30346)dlkuehn1-0/+1
Co-authored-by: David Kuehn <las_dkuehn@iastate.edu>
2022-04-27hiop: Enable barebones testing (#30313)Asher Mancinelli1-0/+37
* Enable barebones testing Run 6 test cases representative of the entire HiOp test suite. * Apply style changes * Dont use unpacking for py2 compat
2022-04-27armpl: add new package (#30305)Annop Wongwathanarat1-0/+179
Co-authored-by: Annop Wongwathanarat <annop.wongwathanarat@arm.com>
2022-04-27orthofinder: add version 2.5.4 (#30344)dlkuehn1-0/+1
Co-authored-by: David Kuehn <las_dkuehn@iastate.edu>
2022-04-27Kokkos: update package for release 3.6.00 (#30315)Luc Berger1-1/+2
2022-04-27mvapich2 MPI_ROOT needed in modules (#30335)Paul Ferrell1-0/+2
We've found that when using mvapich2 via modules, we need to set the MPI_ROOT environment variable.
2022-04-27Update ascent and deps for 0.8.x (#29954)kwryankrattiger7-49/+372
* Update package versions for Ascent/SDK * Umpire build static for cuda from dray * Propagate cuda_arch for ascent and dray packages. * Ascent: Update dependency versions for ascent@0.8: * VTK-h: Patch +shared+cuda for VTK-h 0.8.x * Ascent: Patch to allow @0.8: +shared+cuda * Turn off building ascent tests. * Update ascent patch * WIP: Ascent: Update patch to configure MPI build with CUDA * Ascent: Tests require vtk-m+testlib * WIP: Ascent: Constrain 0.7 for vtk-h * Ascent: Directly depend on VTK-m
2022-04-27e4s ci: uncomment umpire (#29776)eugeneswalker1-1/+1
2022-04-27Mesa: Constrain compatible LLVM version (#30102)kwryankrattiger1-0/+1
Base on release date, not actual compatibility, because LLVM version compatibility is not documented clearly in Mesa for upper version limits.
2022-04-27SCons: added versions 4.0.0-4.3.0 (#30296)Lucas Frérot1-2/+19
* SCons: added versions 4.0.0-4.3.0 * scons: correct package name casing in url_for_version
2022-04-27Allow PyTorch to forward gcc-toolchain cxxcflag to CUDA toolchains (#30318)Brian Van Essen1-0/+4
2022-04-27damask-*: add v3.0.0alpha6 (#30124)Martin Diehl4-11/+22
2022-04-27build(deps): bump actions/checkout from 2 to 3.0.2 (#30235)dependabot[bot]5-30/+30
Bumps [actions/checkout](https://github.com/actions/checkout) from 2 to 3.0.2. - [Release notes](https://github.com/actions/checkout/releases) - [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md) - [Commits](https://github.com/actions/checkout/compare/v2...2541b1294d2704b0964813337f33b291d3f8596b) --- updated-dependencies: - dependency-name: actions/checkout dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2022-04-27blat: add v37 (#30166)snehring1-1/+14
2022-04-27rust: add 1.60.0 and fix libgit2 incompatibility (#30123)Michael Kuhn1-0/+9
2022-04-27Added GPTune v3.0.0 and its dependency py-pymoo (#30119)liuyangzhuan2-1/+26
2022-04-27tauola: fix ~lhapdf (#30190)Valentin Volkl1-2/+7
2022-04-27Add fix for binutils 2.38 +gas makeinfo issue (#30209)Derek Ryan Strong1-0/+3
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-04-27Starpu and Fxt: new packages (#29285)nfurmento2-0/+206
2022-04-27build(deps): bump codecov/codecov-action from 3.0.0 to 3.1.0 (#30234)dependabot[bot]1-5/+5
Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 3.0.0 to 3.1.0. - [Release notes](https://github.com/codecov/codecov-action/releases) - [Changelog](https://github.com/codecov/codecov-action/blob/master/CHANGELOG.md) - [Commits](https://github.com/codecov/codecov-action/compare/e3c560433a6cc60aec8812599b7844a7b4fa0d71...81cd2dc8148241f03f5839d295e000b8f761e378) --- updated-dependencies: - dependency-name: codecov/codecov-action dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2022-04-27openmpi: add toggle for rsh plm (#30251)Harmen Stoppels1-1/+6
By default `openmpi` needs `rsh` from `openssh`, which is a somewhat redundant dependency for clusters using slurm. This PR adds a toggle to allow users to disable the ssh/rsh plm altogether.
2022-04-27gcta: rework package recipe (#30286)snehring2-10/+85
2022-04-27py-pil: deprecate package (#30308)Adam J. Stewart1-1/+1
2022-04-27relion: add altcpu variant and fix fftw (#30097)Glenn Johnson1-16/+53
This package was not setting FFTW when +mklfft was used with +cuda. Since both were set to 'True', the default build was not linked to any FFTW, leading to a run time error. It seems MKL support was conflated with alternative CPU acceleration support. This PR does the following: - adds the altcpu variant to specify non-GPU/CPU acceleration - sets a conflict between +altcpu and +cuda - sets an FFTW implementation - sets fltk+xft when +gui to get a decent looking GUI interface - sets tbb dependency only when +altcpu - adds dependency on ctffind - adds variant and dependency on motioncor2 - sets defaults for - qsub template location - ctffind location - motioncor2 location Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-04-27bucky: fix compile errors with newer gccs (#30314)snehring1-2/+10
2022-04-27ASP-based solver: handle installed specs from unknown namespaces (#30092)Massimiliano Culpo2-0/+44
fixes #28259 This commit discard specs from unknown namespaces from the ones that can be "reused" during concretization. Previously Spack would just error out when encountering them.
2022-04-27reprimand: update requests on boost (#30109)Erik Schnetter1-1/+1
2022-04-27suntans: add new package (#30149)Lhxone1-0/+46
2022-04-26py-cryptography@35: tell cargo to use cli git, not cargo internal git… ↵eugeneswalker1-0/+10
(#30307)
2022-04-26libgit2: add 1.4.3 and 1.3.1 (#30122)Michael Kuhn1-0/+2
2022-04-27fossil: New package (#30311)Erik Schnetter1-0/+25
* fossil: new package * fossil: Format code
2022-04-26Feature: Allow re-use of run_test() in install_time_test_callbacks (#26594)Tamara Dahlgren6-54/+167
Allow re-use of run_test() in install_time_test_callbacks Co-authored-by: Greg Becker <becker33@llnl.gov>
2022-04-27New package: CaNS (#30218)Lhxone1-0/+45
2022-04-26hadoop: Update url and add version 3.3.2 (#29812)haralmha1-1/+2
* hadoop: Update url and add version 3.3.2 * Update url
2022-04-26arrow: Add version 7.0.0 (#29962)haralmha1-0/+1
2022-04-26New package: Swan (#30217)Lhxone1-0/+40
2022-04-26gnuplot: Add version 5.4.3 and add workaround for not found DSO (#30163)haralmha1-0/+2
2022-04-26docs: Fix ROCmPackage example syntax (#30168)Ken Raffenetti1-1/+1
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