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2018-08-23Set DYLD_LIBRARY_PATH on macOS (#9073)Adam J. Stewart3-2/+44
2018-08-23mvapich2: Use rdma-core for mrail and nemesis*ib* fabrics (#9072)Michael Kuhn1-1/+6
2018-08-22More consistent colored messages from activate/deactivate (#9036)Adam J. Stewart1-17/+16
* More consistent colored messages from activate/deactivate * Make 'activating' the default, make 'activated' the debug
2018-08-22Open mpi add v3.1.2 (#9078)Daniel Topa1-1/+2
* Add latest release 3.0.2 https://www.open-mpi.org/software/ompi/v3.0/:x Signed-off-by: Daniel Topa <dantopa@lanl.gov> * 1. Added correct md5 sum for Open MPI v3.1.1 (https://www.open-mpi.org//software/ompi/v3.1/) 2. Made v3.1.1 the default version 3. Added libmpiso versions for v3.1.1 and 3.0.2 Signed-off-by: Daniel Topa <dantopa@lanl.gov> * Added Open MPI v2.14 to version list; Tested build; Added libmpi.so version Signed-off-by: Daniel Topa <dantopa@lanl.gov> * Open MPI 3.1.2 built and tested Signed-off-by: Daniel Topa <dantopa@lanl.gov>
2018-08-22libquo: Packaging updates. (#9076)Sam Gutiérrez1-6/+13
* libquo: Packaging updates. This commit accomplishes a few things: * Changes distribution fetch source * Removes a deprecated version (1.2.9) * Changes dependencies based on version type * Adds a custom autoreconf stage when using the 'develop' version, omitting this step when building from a distribution * Reintroduce v1.2.9.
2018-08-22glib: Add 2.56.2 (#9071)Michael Kuhn1-3/+4
This should finally fix build failures on RHEL6-based distributions. Also fix the patch to apply to the correct versions and distributions.
2018-08-22libfabric: Add develop version option. (#9074)Sam Gutiérrez1-0/+12
Add develop version option to libfabric, conditionally bringing in additional build dependencies: m4, autoconf, automake, libtool.
2018-08-22leveldb: Fix header installation (#9069)Michael Kuhn1-1/+1
leveldb headers are typically included via <leveldb/c.h>. The migration to install_tree in 73c978ddd99973e29f2ba42078b10455c1de5ca8 caused the headers to end up in prefix.include, which breaks existing applications.
2018-08-22r-genefilter: new version (#9063)Levi Baber1-1/+3
* r-genefilter: new version * r-genefilter: fix version in dep
2018-08-22r-annotate: new version (#9061)Levi Baber1-1/+3
2018-08-22r-geneplotter: new version (#9060)Levi Baber1-1/+3
2018-08-22r-qvalue: new version (#9059)Levi Baber1-1/+3
2018-08-22r-rtracklayer: new version (#9056)Levi Baber1-1/+13
2018-08-22r-genomicfeatures: new version (#9057)Levi Baber1-2/+14
2018-08-22r-delayedarray: new version (#9053)Levi Baber1-4/+8
2018-08-22r-genomicranges: new version (#9052)Levi Baber1-5/+12
2018-08-22r-genomeinfodb: new version (#9051)Levi Baber1-1/+6
2018-08-22r-genomeinfodbdata: new version (#9050)Levi Baber1-1/+4
2018-08-22r-rsamtools: new version (#9049)Levi Baber1-1/+10
2018-08-22intel-parallel-studio: add version 2018.3 (#9047)Matthias Diener2-0/+8
* intel-parallel-studio: add version 2018.3 * update intel package too
2018-08-22dealii: patch boost 1.68.0 (#9070)Denis Davydov2-8/+152
* dealii: patch boost 1.68.0 * indent for readability
2018-08-22Added a new target message to comply with newer versions of GNU Make (#9068)Massimiliano Culpo2-0/+3
#fixes 9067 Unit tests were failing on a system with GNU Make v 4.1
2018-08-22r-biostrings: new version (#9048)Levi Baber1-1/+7
2018-08-21tests: add tests for warnings in build outputTodd Gamblin5-8/+132
- add tests for build warnings and error messages - simplify some code in build environment with plural() function
2018-08-21Display warnings if no errors are found in build logAdam J. Stewart1-1/+10
2018-08-21Fix error caused by missing spack-build.out build logAdam J. Stewart2-3/+3
2018-08-21r-iranges: new version (#9041)Levi Baber1-1/+5
* r-iranges: new version * r-iranges: typo
2018-08-21r-biobase: new version (#9038)Levi Baber1-1/+3
* r-biobase: new version * r-biobase: reordering versions
2018-08-21r-biocgenerics: new version (#9039)Levi Baber1-1/+3
* r-biocgenerics: new version * r-biocgenerics: reordering versions
2018-08-21r-annotationdbi : new version (#9040)Levi Baber1-1/+3
* r-annotationdbi: new version * r-annotationdbi: dep type * r-annotationdbi: reordering versions
2018-08-21Add 1.6.1 release. (#9042)Sam Gutiérrez1-1/+2
2018-08-21r-s4vectors: new version (#9043)Levi Baber1-2/+4
2018-08-21r-zlibbioc: new version (#9044)Levi Baber1-2/+4
2018-08-21r-xvector: new version (#9045)Levi Baber1-1/+6
2018-08-21r-biocparallel: new version (#9046)Levi Baber1-1/+3
2018-08-21fix numbering in build error template (#9030)Andreas Baumbach1-2/+2
The original numbering was not incorrect markdown but this is easier to read.
2018-08-20yaml: use ruamel.yaml instead of pyyamlTodd Gamblin68-8136/+5165
- ruamel.yaml allows round-tripping comments from/to files - ruamel.yaml is single-source, python2/python3 compatible
2018-08-20Even better Makefile target parsing (#8819)Adam J. Stewart31-34/+302
#8223 replaced regex-based makefile target parsing with an invocation of "make -q". #8818 discovered that "make -q" can result in an error for some packages. Also, the "make -q" strategy relied on interpreting the error code, which only worked for GNU Make and not BSD Make (which was deemed acceptable at the time). As an added bonus, this implementation ignores the exit code and instead parses STDERR for any indications that the target does not exist; this works for both GNU Make and BSD Make. #8223 also updated ninja target detection to use "ninja -t targets". This does not change that behavior but makes it more-explicit with "ninja -t targets all" This also adds tests for detection of "make" and "ninja" targets.
2018-08-20Introduce templates for specific issue types (#8842)Massimiliano Culpo3-8/+126
This replaces the single github issue-reporting template with templates for the following types of issues: * Build issues * Spack command errors * Feature request Each template includes suggestions which are generally useful for the type of issue encountered.
2018-08-20dealii: add constraint on suite-sparse for old gcc (#9026)Denis Davydov1-0/+1
2018-08-20dealii: blacklist boost 1.68.0 due to segmentation fault in serialization ↵Denis Davydov1-2/+3
lib (#9023)
2018-08-20update Intel packages (2018.u5 for TBB and 2018.u3 for the others) (#8928)Denis Davydov5-0/+9
2018-08-18Open MPI: add v2.1.5 (#9021)Daniel Topa1-0/+1
Final fix for v2.1 (hopefully) Test build on LANL CCSCS4, Desktop Signed-off-by: Daniel Topa <dantopa@lanl.gov>
2018-08-18Openmpi add v2.1.4 (#9006)Daniel Topa1-1/+2
* Add latest release 3.0.2 https://www.open-mpi.org/software/ompi/v3.0/:x Signed-off-by: Daniel Topa <dantopa@lanl.gov> * 1. Added correct md5 sum for Open MPI v3.1.1 (https://www.open-mpi.org//software/ompi/v3.1/) 2. Made v3.1.1 the default version 3. Added libmpiso versions for v3.1.1 and 3.0.2 Signed-off-by: Daniel Topa <dantopa@lanl.gov> * Added Open MPI v2.14 to version list; Tested build; Added libmpi.so version Signed-off-by: Daniel Topa <dantopa@lanl.gov>
2018-08-18chatterbug: new spack package (#8994)Abhinav Bhatele1-0/+65
2018-08-18QMCPACK Spack Package Update (Summer 2018) (#9008)Nichols A. Romero1-12/+21
* QMCPACK now supports QE 6.3. Dropped QE 5.3 due to incompatibilities. * QMCPACK general clean-up of depends_on. * Add QMCPACK 3.5.0 * More robust support of MKL detection in QMCPACK.
2018-08-18scorep: make optional packages variants (#9011)Abhinav Bhatele3-21/+128
* scorep: make optional packages variants add packages for cube sub-components: cubew, cubelib * fix style errors
2018-08-18Fix missing makefile variable in clapack package (#9016)Adam J. Stewart1-0/+1
2018-08-18CBLAS: Don't hardcode BLAS library name (#9017)Adam J. Stewart1-6/+6
2018-08-18Update bohrium version (#9020)Michael F. Herbst1-1/+2
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