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2018-05-17init: remove dependency on spack.versionTodd Gamblin3-16/+8
- no longer require `spack_version` to be a Version (it isn't used that way anyway) - use a simple tuple `spack_version_info` with major, minor, patch versions - generate `spack_version` from the tuple
2018-05-17init: remove binary_cache_retrieved_specs global variableTodd Gamblin2-26/+21
- remove variable from spack/__init__.py - clean up imports and some code structure in binary_distribution.py
2018-05-17init: remove spack.concretizer global variableTodd Gamblin5-82/+104
2018-05-17init: remove build_jobs global variableTodd Gamblin3-15/+4
2018-05-17init: convert spack.dirty global to config optionTodd Gamblin4-34/+12
2018-05-17init: remove template_dirs globalTodd Gamblin6-24/+5
- remove template_dirs global variable from __init__.py - also remove update_template_dirs fixture, which had no effect on test correctness
2018-05-17init: replace global spack.do_checksum with config optionTodd Gamblin13-71/+67
2018-05-17init: replace spack.insecure global with spack.config.getTodd Gamblin10-43/+116
2018-05-17config: simplify configuration API to just get and setTodd Gamblin31-173/+207
- replace `spack.config.get_configuration()` with `spack.config.config()` - replace `get_config`/`update_config` with `get`, `set` - add a path syntax that can be used to refer to specific config options without firt getting the entire configuration dict - update usages of `get_config` and `update_config` to use `get` and `set`
2018-05-17config: create internal config scope for commands to use.Todd Gamblin5-13/+87
2018-05-17init: Move file cache initialization out of __init__.pyTodd Gamblin9-42/+102
2018-05-17config: rework config system into a class instead of globalsTodd Gamblin13-470/+555
- Current configuration code forces the config system to be initialized at module scope, so configs are parsed on every Spack run, essentially before anything else. - We need more control over configuration init order, so move the config scopes into a class and reduce global state in config.py
2018-05-17init: move editor from spack/__init__.py to spack.util.editorTodd Gamblin3-22/+58
2018-05-17init: factor paths out of spack/__init__.py and into spack.paths moduleTodd Gamblin65-296/+367
2018-05-17init: simplify import ordering in __init__.pyTodd Gamblin8-87/+112
2018-05-17flex: use 2.6.3. by default (#8154)Denis Davydov1-3/+6
Fixes #8152 Flex 2.6.4 doesn't build with gcc@7:. This sets Flex 2.6.3 as the preferred version. The flex package had a conflict directive for this but originally the recorded conflict was specific to ubuntu; this appears to be an issue on multiple operating systems so this also updates the conflict to be more general and adds a comment which links to the relevant issues.
2018-05-17swap-assembler: Create new package. (#8144)lingnanyuan1-0/+43
* swap-assembler: Create new package. * swap-assembler: fix flake8 error.
2018-05-17pv: initial commit (#8147)Christoph Junghans1-0/+36
2018-05-17r-rstan: new version and dependents (#8158)Levi Baber3-0/+4
* r-stanheaders: new version * r-rstan: new version * r-rcppeigen: new version * r-rstan: requires newer version of r-rcppeigen
2018-05-17Add version 6.1. to ESSL spackage file. (#8170)Serban Maerean1-0/+1
2018-05-17cbtf-argonavis-gui: add openspeedshop-utils package to address qt conflicts ↵Jim Galarowicz8-211/+689
(#8066) Fixes #7946 Creates an openspeedshop-utils package that does not depend on qt3 and can be used to resolve the needs of cbtf-argonavis-gui. Changes for creating a release versus develop build are also included. There are package versions which are no longer relevant (e.g. 1.3.0 for cbtf-argonavis-gui has been replaced with 1.3.0.0) but these versions need to be kept to allow uninstalling them; issue #8173 has been created to investigate this.
2018-05-16Add dependencies for py-dask (#8120)Adam J. Stewart11-17/+367
2018-05-16r-rcppcnpy: a new package. (#8139)健美猞猁1-0/+39
* r-rcppcnpy: a new package. * Specify dependency versions. * Update dependency.
2018-05-15Add list_url to allow download of prior versions from cran archive (#8141)Eric2-0/+2
2018-05-15Add libunwind-1.2.1 (#8145)David Böhme1-0/+1
2018-05-15astyle: add 3.1 (#8137)Denis Davydov1-0/+1
2018-05-15Move report writers to separate classesZack Galbreath5-190/+335
2018-05-15Add test case for CDash reportingZack Galbreath1-0/+42
2018-05-15upload reports to CDashZack Galbreath2-6/+35
2018-05-15Generate CDash reports for build/install stepZack Galbreath2-2/+60
2018-05-15CDash report for concretization errorsZack Galbreath3-1/+35
Capture any concretization errors and record them in a CTest Update.xml file.
2018-05-15CDash report for configure stepZack Galbreath4-8/+127
Generate CTest XML file containing configure output
2018-05-15Capture source line number in CTest log parserZack Galbreath1-1/+1
2018-05-15Fix typo in commentZack Galbreath1-1/+1
2018-05-15Add CDash as a valid reporting formatZack Galbreath1-1/+2
2018-05-15Initialize report generator before parsing specsZack Galbreath2-7/+10
This will allow us to generate reports for concretization errors
2018-05-15Allow --overwrite and --log-format to be used togetherZack Galbreath1-36/+35
Restructure the logic of the spack install command to allow these two command-line arguments to be used at the same time.
2018-05-15Format-agnostic data structure for reportsZack Galbreath2-66/+68
Replace the JUnit-specific terms 'testsuite' and 'testcase' with 'spec' and 'package', respectively.
2018-05-14patch petsc test cases for XL compiler (#8091)Serban Maerean2-0/+62
- After spack install, these test cases are built in a seperate step, outside of spack, but they need to patched after staging so users don't have to do it in a seperate step. - The test cases are installed under `<petsc install directory>/share/petsc/examples` and can be built and executed by invoking `gmake -f gmakefile.test` in that directory.
2018-05-14Added Shim to Support hdf5+mpi in Spack Silo (#8130)Robert Pavel1-1/+9
* Added Shim to Support hdf5+mpi in Spack Silo Added compatibility for hdf5+mpi to silo spackage to support spackages with dependency chains that include silo and hf5+mpi * Fixed fixable flake8 issue with silo spackage Fixed missing whitespace around operator * Setting MPI Variant to Default to True As per guidance changing variant to default to MPI builds
2018-05-14salmon: adding in version restriction for boost (#8129)snehring1-1/+1
1.67 does not work with this
2018-05-14prenek missing X.h (#8121)Cameron Smith1-0/+9
2018-05-14lordec: Create new package. (#8095)lingnanyuan1-0/+44
* lordec: Create new package. * lordec: Add homepage, change to MakefilePackage. * Modify dependency type.
2018-05-14r-fit-models: Create new package (#8122)Eric1-0/+38
2018-05-14r-vipor: Create new package (#8128)Eric1-0/+38
2018-05-14LBANN: add hydrogen as optional dependency (#8085)Brian Van Essen2-6/+188
Add Hydrogen package for fork of Elemental library. Update LBANN to use either Hydrogen or Elemental.
2018-05-14r-shinydashboard: Create new package (#8116)Eric1-0/+40
2018-05-14r-picante: Create new package (#8117)Eric1-0/+40
* r-picante: Create new package * Remove dependency already included in RPackage base class
2018-05-14r-squash: Create new package (#8118)Eric1-0/+36
* r-squash: Create new package * Remove dependency already included in RPackage base class * remove extra file
2018-05-14Update py-llvmlite to reflect llvm@6 requirement for versions >0.23.0 (#8109)Sajid Ali1-2/+5
* new file: package.py * corrected using pep8online.com * Update package.py * correct typo * as requested * modified: package.py * Update package.py
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