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2022-02-15github: add default value for spack spec and error message (#28796)Seth R. Johnson1-4/+14
2022-02-15intel compiler: fix link time error with `LLVMgold.so` (#28731)Stephen Sachs3-0/+42
The Intel compiler will, at link time, call `ld -plugin LLVMgold.so`, which expects libraries like `libimfo.so` to be found either in the `LD_LIBRARY_PATH` or in `LLVMgold.so`s RPATH. As `LLVMgold.so` already uses RUNPATH, I used that to extend this to the necessary library locations. This PR should fix issues: https://github.com/spack/spack/issues/10308 https://github.com/spack/spack/issues/18606 https://github.com/spack/spack/issues/17100 https://github.com/spack/spack/issues/21237 https://github.com/spack/spack/issues/4261 Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2022-02-15Make `spack -e [env] spec` show environment root specs (#25941)Harmen Stoppels2-19/+47
2022-02-15SIRIUS: optionlal dependency on Python (#28711)Anton Kozhevnikov2-25/+32
* depend on Python only when building the module * fixes for shared costa libray * add deprecated=True for old packages
2022-02-15Unalias despacktivate only when alias exists (#28939)Harmen Stoppels1-1/+1
2022-02-15direnv: fix installation procedure (#28940)acastanedam1-1/+3
Setting Spack's `$prefix` to `$DESTDIR` and not to `$PREFIX` install the package in `$prefix/usr/local` and not in `$prefix`, thus when it is loaded the executable `direnv` in not "seen" by the environment.
2022-02-15spectre: patch Boost pre v1.67 (#28931)Nils Vu1-0/+5
2022-02-15genometools: add v1.6.2 (#28936)dlkuehn1-1/+2
Co-authored-by: las_dkuehn <las_dkuehn@gilman-0107-02.las.iastate.edu>
2022-02-15dd4hep: add v1.20 (#28937)Wouter Deconinck1-0/+1
No major changes to the build system, https://github.com/AIDASoft/DD4hep/compare/v01-19...v01-20
2022-02-15sundials: use make for some of the smoke tests (#28938)Cody Balos1-8/+10
2022-02-15meson: add versions 0.61.2 and 0.60.3 (#28934)Mark W. Krentel1-0/+2
2022-02-15py-anyio: add 3.5.0 (#28915)Manuela Kuhn1-1/+5
* py-anyio: add 3.5.0 * Add wheel dependency
2022-02-15apex: add patch to install missing header (#28844)Mikael Simberg2-0/+18
Co-authored-by: Mikael Simberg <mikael.simberg@iki.if>
2022-02-15New quantum-espresso maintainer (#28927)Daniele Cesarini1-1/+1
2022-02-14py-attrs: add 21.4.0 (#28914)Manuela Kuhn1-0/+2
2022-02-14py-jsonschema: add 4.4.0 (#28919)Manuela Kuhn1-10/+18
2022-02-15darwin: make sure MACOSX_DEPLOYMENT_TARGET has a minor component (#28926)Seth R. Johnson1-1/+10
2022-02-14updated cray-fftw (#28922)luker1-2/+3
added the latest cray-fftw version, added myself as a maintainer, updated the homepage
2022-02-14py-pyopencl: fix dependency to py-six (#28916) (#28917)Pierre Neyron1-0/+1
2022-02-14replace mesa18 recipe with mesa recipe for the rocm releases (#28491)Sreenivasa Murthy Kolam4-4/+4
2022-02-14easi: add new package (#28828)ravil-mobile1-0/+74
Co-authored-by: ravil <ravil.dorozhinskii@tum.de>
2022-02-14py-bids-validator: add 1.8.9 (#28913)Manuela Kuhn1-0/+1
2022-02-14New package: py-pyfr (#28847)MichaelLaufer2-0/+78
* Initial support for PyFR * styling * fixes * more syling fixes * fixes for dependencies * add min rocblas version
2022-02-14intel-oneapi-mpi: set I_MPI_ROOT in setup_dependent_build_environment (#28890)Tom Vander Aa1-0/+2
* setting I_MPI_ROOT is sometimes needed for find_package(MPI) in cmake to work
2022-02-14fastjet add v3.3.4, fjcontrib add v1.045 (#22667)Thomas Madlener2-0/+2
2022-02-14AMD rocm-openmp-extras: add v4.5.2 (#28790)estewart081-7/+14
2022-02-14Python: fix build with Fujitsu compiler (#28744)Toyohisa Kameyama2-1/+18
2022-02-14py-{mizani,plotnine}: add packages. (#28841)Olli Lupton2-0/+53
* py-{mizani,plotnine}: add packages. * Add missing python dependency.
2022-02-14magma: move the execution of stand-alone tests to preferred directory (#28895)G-Ragghianti1-1/+1
2022-02-14palisade-development: change fppe-logreg variant to point to a stable tag ↵John Wohlbier1-4/+4
instead of a branch (#28717) Co-authored-by: John Wohlbier <jgwohlbier@sei.cmu.edu>
2022-02-14py-pandas: add v1.4.1 (#28904)Adam J. Stewart1-0/+1
2022-02-14py-mypy: add new versions (#28905)Adam J. Stewart1-6/+10
2022-02-14trilinos: disable UVM for 13.2+ (#28879)Seth R. Johnson1-1/+3
2022-02-13[py-ctgan] fixed py-torchvision version range (#28892)Jen Herting1-1/+1
2022-02-13Bump libtree (#28908)Harmen Stoppels1-0/+1
2022-02-13go: mark conflict for ancient compilers (#28888)Seth R. Johnson1-0/+3
2022-02-12py-grpcio: add v1.43.0 (#28784)Adam J. Stewart1-4/+5
2022-02-12hypre: add v2.24.0 (#28896)Sarah Osborn1-0/+1
2022-02-12cray: add NVIDIA to the list of canonical names (#28246)Steve Leak1-0/+1
2022-02-11lwgrp/dtcmp packages: add version 1.0.5 and 1.1.4, respectively(#28817)Adam Moody2-0/+2
2022-02-11ffmpeg package: add libx264 variant; fix license variants. (#28808)Olli Lupton2-0/+25
Prior to this patch, setting +gpl did not pass --enable-gpl and did not allow GPL-only codecs to be enabled.
2022-02-11LBANN SW stack packages: gcc-toolchain and clang support (#28769)Brian Van Essen4-7/+52
* Added support to LBANN, Hydrogen, DiHydrogen, and Aluminum to capture a gcc-toolchain cxxflags argument and pass it to a CMAKE_CUDA_FLAG argument when set. This helps deal with compiling with clang on systems with old base gcc installations. * Added a dependency on py-scipy when enabling tests on LBANN. * Updated the C++ standard for Hydrogen to C++17. * Added a new variant +apps to enable (or disable) python packages that are used by applications in the LBANN repo, but are not strictly required for building and using LBANN. * Added a run time dependency for both py-pytest and py-scipy so that they are activated in any environment. * Added support for building LBANN, Hydrogen, and DiHydrogen with the IBM ESSL BLAS library. This requires explicit identification of additional LAPACK libraries, since ESSL does not implement LAPACK, but is found by CMake. * Fixed a bug in the LBANN dependency on OpenCV for Power architectures. The +powerpc variant is only required for GCC toolchains and causes Clang to break. Switched to only enabling when using %gcc on power.
2022-02-11Update/caliper stand alone test compiler (#28526)Richarda Butler1-16/+22
2022-02-11spfft: fix missing hipFFT dependency with latest ROCm versions (#28880)Simon Frasch1-12/+15
2022-02-11[rocm-smi-lib] Disable pdf generation with a patch (#28842)Teodor Nikolov2-0/+17
- Installation often hangs building the documentation. This happens when doxygen and latex are found. To avoid the issue, comment-out that part of the code until an explicit cmake variable to disable documentation generation is available.
2022-02-11sundials: add new version and fix smoke tests (#28894)Cody Balos1-47/+89
* sundials: fix smoke tests * sundials: add new version * use cmake+make instead of make for tests, fix style * use cmake_bin workaround from https://github.com/spack/spack/pull/28622
2022-02-11Bug fix for findutils: apply nonnull.patch only for versions 4.8.0+ (#28857)Dom Heinzeller1-1/+1
2022-02-11openloops: remove README from install prefix (#28767)haralmha1-1/+1
2022-02-11swftools package: patches for GCC@10: (#28296)Glenn Johnson3-0/+106
2022-02-11move typing_extensions.py back into typing.py =\ (#28549)Danny McClanahan3-29/+26
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