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2016-07-18gitignore: don't require opt to be a directoryBen Boeckel1-1/+1
I use a symlink to make it easy to swap out.
2016-07-18Merge pull request #1269 from davydden/pkg/hypre_trilinos_blasTodd Gamblin3-20/+44
Pkg/hypre trilinos blas
2016-07-18Merge pull request #1268 from LLNL/bugfix/spack-info-gh1256Todd Gamblin5-211/+293
Fix broken `spack info` command after build dep merge.
2016-07-18flake8 fixes.Todd Gamblin5-171/+215
- package.py - spec.py - test/architecture.py
2016-07-18Fix #1265: Errors in spack reindexTodd Gamblin2-43/+74
- Consolidated code to read spec.yaml and database index.yaml into one method (`read_yaml_dep_specs()`) in spec.py. - Code understands old hash format, tuple format, and dicts for dep specs, for backward compatibility. - Spec YAML now uses a dict with keys to represent dep specs (this is more future-proof). - Dep specs no longer contain !!py-tuple entries in YAML (only lists properly YAML-ize) - bump database version.
2016-07-18Fix broken `spack info` command after build dep merge.Todd Gamblin2-1/+8
- Added a method to get dependencies of particular types from Package - Fixed info command.
2016-07-18Better error messages for `spack reindex`.Todd Gamblin2-7/+17
2016-07-17Merge pull request #1188 from epfl-scitas/packages/py-numpyTodd Gamblin1-2/+2
RPATH for blas in py numpy
2016-07-17Merge pull request #1252 from hartzell/patch-5Todd Gamblin1-3/+4
Fix format of explanation of an example & question
2016-07-17Merge pull request #1258 from eschnett/eschnett/openmpi-2.0.0Todd Gamblin1-1/+4
Update to OpenMPI 2.0.0
2016-07-17Merge pull request #1240 from epfl-scitas/truncated_documentationTodd Gamblin1-8/+8
doc : fixes #1239
2016-07-17docs : substituted None with empty cellalalazo1-3/+3
2016-07-16flake8 fixesDenis Davydov2-2/+6
2016-07-16trilinos: don't hardcode blas/lapack namesDenis Davydov1-2/+5
2016-07-16hypre: don't hardcode blas/lapack/mpi; optionally run testsDenis Davydov1-13/+26
2016-07-16add to_lib_name() to get library name from a pathDenis Davydov1-3/+7
2016-07-15Correct indentationErik Schnetter1-1/+1
2016-07-15Merge pull request #1261 from adamjstewart/features/create-deptypebecker331-3/+3
Automatically add deptype to newly created packages
2016-07-15Automatically add deptype to newly created packagesAdam J. Stewart1-3/+3
2016-07-15Merge pull request #1246 from suraia/improve-shell-integrationbecker331-8/+20
Improve shell integration.
2016-07-15Merge pull request #1168 from epfl-scitas/packages/gtsbecker331-0/+53
gts : added package
2016-07-15Merge pull request #1177 from epfl-scitas/packages/swiftsim_and_metisbecker331-0/+1
swiftsim : fixed configuration for metis
2016-07-15Merge pull request #1187 from paulhopkins/bugfix/python-updatesbecker331-3/+22
Bugfix/python updates
2016-07-15Merge pull request #1227 from glennpj/ggvisbecker335-0/+237
New package - r-ggvis
2016-07-15Merge pull request #1259 from adamjstewart/fixes/run-flake8becker331-1/+2
Updates to run-flake8 test
2016-07-15Merge pull request #1254 from mdevlin1/features/hmmerbecker331-0/+76
add HMMER package
2016-07-15Merge pull request #1251 from hartzell/patch-4becker331-1/+1
Minor typo fix
2016-07-15Updates to run-flake8 testAdam J. Stewart1-1/+2
2016-07-15Update to OpenMPI 2.0.0Erik Schnetter1-1/+4
2016-07-15add HMMER packageMitchell Devlin1-0/+76
2016-07-15Merge pull request #378 from mathstuf/dep-typesTodd Gamblin226-507/+1053
dependency types
2016-07-14Fix package name bug.Todd Gamblin1-1/+1
2016-07-14added py-pydatalog packageGregory Becker1-0/+38
2016-07-14Add GNU Prolog package.Todd Gamblin1-0/+41
2016-07-14spec: assign namespaces to the full dependency DAGBen Boeckel1-1/+1
2016-07-14package: mention the package that is no concreteBen Boeckel1-1/+1
2016-07-14foam-extend, sundials: add cmake as a builddepBen Boeckel2-0/+2
The sundials doesn't use CMake directly, but it is referenced in the patch step. I suspect it calls CMake somewhere else in its build system.
2016-07-14cantera: use nolink for python module dependenciesBen Boeckel1-4/+4
Unsure about this, but this is probably true.
2016-07-14lua: bring in run deps of build and run depsBen Boeckel1-1/+1
2016-07-14R: look only at run dependencies of build and run depsBen Boeckel1-1/+1
2016-07-14python: setup the dependent environment properlyBen Boeckel1-1/+1
We want the run dependencies of all build and run dependencies of the current package.
2016-07-14msgpack-c: add missing dependency on cmakeBen Boeckel1-0/+2
2016-07-14py-matplotlib: require py-setuptools to buildBen Boeckel1-0/+1
2016-07-14deptypes: mark deptypes in packagesBen Boeckel183-305/+329
2016-07-14spack: introduce dependency typesBen Boeckel34-182/+697
deptypes: allow for different queries For things like Python modules, they are required for the build and runtime, but rather than adding a new parameter for what to query across the dependency DAG, just expose the recursive query parameter.
2016-07-14test: use file:// url for git reposBen Boeckel1-2/+2
2016-07-14darwin: explicitly use the 'when=' kwargBen Boeckel3-3/+3
2016-07-14doxygen: add missing importBen Boeckel1-0/+2
2016-07-14test/stage: use os.path.realpath on the test pathsBen Boeckel1-2/+2
When var/spack/stage is a symlink, the tests fail since realpath is used on the resulting path, but not the original path, so the string compare fails. Smarter path testing might be a better option.
2016-07-14directory_layout: fix error path when specs conflictBen Boeckel1-2/+2
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