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2020-02-24modules: store configure args during build (#11084)Michael Kuhn4-11/+41
This change stores packages' configure arguments during build and makes use of them while refreshing module files. This fixes problems such as in #10716.
2020-02-24add new package : agrep (#15165)darmac1-0/+23
* add new package : agrep * agrep: move binary to bin/
2020-02-24Added extra versions of OCaml (#15177)Anthony Scemama1-0/+11
* Aded extra versions for OCaml * Added maintainer
2020-02-24sz: update to version 2.1.8.1 (#15154)Robert Underwood1-12/+81
The newer versions of SZ now uses CMake to build.
2020-02-24Update py-bx-python package (#15175)Glenn Johnson2-4/+29
* Update py-bx-python package - add update to py-bx-python - switch to pypi downloads - set dependencies * Update var/spack/repos/builtin/packages/py-bx-python/package.py I had initially pulled version 0.8.6 and then updated that to 0.8.8 but missed the change in the python specs between those two versions. Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Fix version 0.7.4 - set dependency on python2 - add dependency on py-python-lzo - add py-python-lzo package - set py-numpy dependency to correspond to latest version that works with python2 * Add constraint for py-six dependency * Update var/spack/repos/builtin/packages/py-bx-python/package.py Ah, I had that `when` clause in and then took it out as it did not seem to be needed. I guess it is always better to be more explicit. Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Remove py-numpy constraint Let the concretizer catch the conflict with python2 and py-numpy versions. Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-02-23Update py-rseqc package (#15176)Glenn Johnson1-4/+10
This PR depends on #15175 - add updated version - set depedencies
2020-02-23add new package : batctl (#15160)darmac1-0/+24
* add new package : batctl * batctl: move binary to bin/
2020-02-23add new package : bubblewrap (#15162)darmac1-0/+28
* add new package : bubblewrap * bubblewrap: remove some comment in package.py
2020-02-23Merge branch 'releases/v0.14' into developTodd Gamblin5-1/+11810
2020-02-23update CHANGELOG.md for 0.14.0v0.14.0Todd Gamblin1-0/+97
2020-02-23version bump: 0.14.0Todd Gamblin4-1/+11713
2020-02-23py-setproctitle: Add new package (#15170)Michael Kuhn1-0/+18
2020-02-23create: Mention that python dependency does not have to be added (#15173)Michael Kuhn1-1/+3
A generic python dependency is already added implicitly by the PythonPackage class.
2020-02-23Separate HepMC2 and HepMC3 build recipes; Python3 support for HepMC3 (#15147)iarspider1-6/+28
* Fixes & additional variant(s) for HepMC3 * Syntax * Restore recipe for HepMC2 * Remove FIXME * Update package.py * Apply suggestions from code review Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-02-23Fix silex build (#15172)Seth R. Johnson1-10/+18
* Mark silo+silex as requiring QT4 * Add missing readline dependency to silo * Fix silo QT4 usage and verify silex works on mac ``` -- darwin-mojave-x86_64 / clang@11.0.0-apple -------------------- 7gdcud4 silo@4.10.2+fortran~mpi patches=7b5a1dc2a0e358e667088d77e7caa780967fa8ea60be89c44986605df9990abe +pic+shared+silex pk3wbwd hdf5@1.10.6~cxx~debug~fortran+hl~mpi+pic+shared+szip~threadsafe slsy6ko libszip@2.1.1 xj36ejk zlib@1.2.11+optimize+pic+shared u4662xx libx11@1.6.4 3lpe6j3 qt@4.8.7~dbus~examples~framework freetype=none ~gtk~opengl patches=03f9893882c63a9a9617d9ecab9caf80661c96df13f596a9b24fc4579490144a,a4f37427b34d88df6a6adc16e1e6c805087d4f3a7c658e1797450b0912fcbf5d,f17e0b5fb1f43bccadf7298533eca57294f4acab11ed83b176c61c441f745c19 ~phonon+shared~sql~ssl~tools~webkit shdhdbh glib@2.56.3~libmount patches=c325997b72a205ad1638bb3e3ba0e5b73e3d32ce63b2d0d3282f3e3a2ff4663c tracing=none msyeqht gettext@0.20.1+bzip2+curses+git~libunistring+libxml2+tar+xz ysmjykg bzip2@1.0.8+shared w354vrb libxml2@2.9.9~python jg6ekuh libiconv@1.16 b7n722h xz@5.2.4 zbgxvxi ncurses@6.1~symlinks~termlib 2e6sifw tar@1.32 7yg7qah libffi@3.2.1 zg55iyu pcre@8.43~jit+multibyte+utf zqrlxlz perl@5.30.0+cpanm+shared+threads un7wzvl python@3.7.4+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations patches=210df3f28cde02a8135b58cc4168e70ab91dbf9097359d05938f1e2843875e57 +pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib l4gxq46 expat@2.2.9~libbsd 3t4dwsv gdbm@1.18.1 h2bjtz2 readline@8.0 ugvknwc openssl@1.1.1d+systemcerts hsmq6ou sqlite@3.30.1~column_metadata+fts~functions~rtree lpfob23 icu4c@65.1 cxxstd=11 lf66vbr inputproto@2.3.2 afovyhg libjpeg-turbo@2.0.3 5dgw556 libmng@2.0.3 build_type=RelWithDebInfo 3z4lw2w lcms@2.9 flleuyu libtiff@4.0.10 67tigfp libpng@1.6.37 ```
2020-02-22Automatically run LLDB codesign script on mac (#15169)Seth R. Johnson1-5/+12
Newer versions of LLVM provide a one-line command to set up LLDB code signing. Now the build will abort only if this command fails. https://lldb.llvm.org/resources/build.html#code-signing-on-macos
2020-02-22add new package : brltty (#15161)darmac1-0/+30
2020-02-22add new package : audit-userspace (#15163)darmac1-0/+25
2020-02-22add new package : apachetop (#15164)darmac1-0/+27
2020-02-22add new package : advancecomp (#15166)darmac1-0/+24
2020-02-22add new package : acpid (#15167)darmac1-0/+28
2020-02-22lighttpd : fix pcre depends (#15168)darmac1-0/+2
2020-02-21Emit a sensible error message if compiler's target is overly specific (#14888)Massimiliano Culpo2-0/+33
* Emit a sensible error message if compiler's target is overly specific fixes #14798 fixes #13733 Compiler specifications require a generic architecture family as their target. This commit improves the error message that is displayed to users if they edit compilers.yaml and use an overly specific name.
2020-02-21sundials: add version 5.1.0 and trilinos variant (#15155)Cody Balos1-5/+50
* sundials: add version 5.1.0 and trilinos variant * sundials: add version 5.1.0 and trilinos variant
2020-02-21Changes necessary to build lbann@develop (#15153)Robert Blake1-2/+3
* Necessary changes to get lbann develop to compile. * Reformatting for flake8 * More flake8 changes. * Removing redundant clara dependency.
2020-02-21shtools: New package (#15133)Erik Schnetter1-0/+47
* shtools: New package * shtools: Convert to MakefilePackage, use Spack's generic compiler flags * shtools: Make function location explicit
2020-02-21Add extra version of py-jsonschema (#14993)iarspider2-3/+34
* Add extra version of py-jsonschema * Update dependencies * Update dependencies + flake8 * Add py-pyrsistent package * Update package.py * Update var/spack/repos/builtin/packages/py-jsonschema/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Update package.py * Update package.py * Apply suggestions from code review Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Apply suggestions from code review Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-02-21amrex: New version 20.02 (#15132)Erik Schnetter1-0/+1
2020-02-21Updating raja versions. (#15148)Robert Blake1-0/+3
2020-02-21Add clang compiler (#15152)Tim Haines1-0/+2
2020-02-21QE+QMCPACK Converter Update February 2020 (#15135)Nichols A. Romero2-8/+14
* Add a variant to QE that suppresses upstream patching. Need in order to do ddependency patching. * QE variant fails to build often. Set default variant to False as a user friendly change. * QMCPACK converter patch collides with internal QE patches. Deactivate internal patches when performing dependency patching. * Clearer description of QE patch variant that is also flake8 compliant.
2020-02-21Disable qt3d when opengl is disabled (#15149)Seth R. Johnson1-4/+11
* Disable qt3d when opengl is disabled * Remove `-skip qtquick3d` unless QT 5.14 Found while checking build of qt 5.14.
2020-02-21Add extra version of py-sqlalchemy (#15109)iarspider1-0/+8
* Add extra version of py-sqlalchemy * Update package.py * Update package.py * Update package.py * Update package.py * Update package.py * Apply suggestions from code review Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Update package.py * Update package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-02-20Updated installer module copyright (#15138)Tamara Dahlgren1-1/+1
Update the copyright for `installer.py`.
2020-02-20Add decentralized-internet package (#15129)Andrew Kamal1-0/+14
* Create package.py * Update package.py * Update package.py * Update package.py * Update package.py * Update var/spack/repos/builtin/packages/decentralized-internet/package.py Commit suggestion Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Update package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-02-20Restore package-related unsigned binary changes from PR 11107 (#15134)Tamara Dahlgren2-12/+21
Restore package-related unsigned binary changes from PR 11107
2020-02-20Package hashing: fix detection of directives (#14763)Peter Scheibel3-0/+46
The hashing logic looks for function calls that are Spack directives. It expects that when a Spack directive is used that it is referenced directly by name, and that the directive function is not itself retrieved by calling another function. When the hashing logic encountered a function call where the function was determined dynamically, it would fail (attempting to access a name attribute that does not happen to exist in this case). This updates the hashing logic to filter out function calls where the function is determined dynamically when looking for uses of Spack directives.
2020-02-20libf77zmq (#15125)Anthony Scemama1-0/+38
* libf77zmq * Cleaning mkdirp * Removed install function * Renamed to f77-zmq * Fixed Flake8 * Fixed Flake8
2020-02-20Add extra version of py-terminado (#15111)iarspider1-0/+2
* Add extra version of py-terminado * Update package.py * Update var/spack/repos/builtin/packages/py-terminado/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-02-20Add extra version of py-tornado; update dependencies (#15112)iarspider1-2/+5
* Add extra version of py-tornado * Update package.py * Update package.py * Update package.py
2020-02-20Add extra version of py-typing (#15113)iarspider1-0/+1
* Add extra version of py-typing * Update package.py * Fix typo * Update package.py
2020-02-20Add extra version of py-sympy (#15110)iarspider1-1/+3
* Add extra version of py-sympy * Update package.py
2020-02-20Add extra version of py-widgetsnbextension (#15105)iarspider1-1/+5
* Add extra version of py-widgetsnbextension * Update dependency version * Update package.py * Update package.py * Update var/spack/repos/builtin/packages/py-widgetsnbextension/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-02-20Add extra version of py-urllib3 (#15114)iarspider1-0/+11
* Add extra version of py-urllib3 * Update package.py * Update package.py * Update package.py * Update var/spack/repos/builtin/packages/py-urllib3/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-02-20Add extra version of py-wheel (#15116)iarspider1-1/+5
* Add extra version of py-wheel * Update package.py * Update package.py
2020-02-20Add extra version of vc (#15119)iarspider1-0/+7
* Add extra version of vc * Update package.py * Update package.py * Update var/spack/repos/builtin/packages/vc/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Update package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-02-20Use get_spec in relocated _try_install_from_binary_cache (#15131)Patrick Gartung1-1/+1
* Use get_spec in relocated _try_install_from_binary_cache
2020-02-20Compilers require an exact match on version during concretization (#14752)Massimiliano Culpo2-2/+26
Spack now requires an exact match of the compiler version requested by the user. A loose constraint can be given to Spack by using a version range instead of a concrete version (e.g. 4.5: instead of 4.5).
2020-02-20Mark binutils-related conflicts (#15075)Seth R. Johnson3-9/+23
* Mark conflicts with binutils on darwin * Explicitly require binutils bootstrapping and mark conflict with nvptx * Disable gold variant by default on darwin
2020-02-20adding package igv (#15096)snehring1-0/+36
* igv: adding package igv * removing some remaining initial boilerplate * changing path construction to be more correct * adding in type for java dep, also forgot about prefix.bin etc
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