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2022-05-17ecp-data-vis-sdk: Drop fortran from ascent spec. (#30707)kwryankrattiger1-1/+3
2022-05-17glew: Fix glu and glx dependencies (#30705)Chuck Atkins2-9/+33
2022-05-17Update rivet to 3.1.6, yoda to 1.9.5; fix recipes (#30702)iarspider2-0/+9
* Update rivet to 3.1.6, yoda to 1.9.5; fix recipes * Use filter_compiler_wrappers instead of custom post-install step
2022-05-17add julia 1.6.6 (#30703)Harmen Stoppels1-0/+1
2022-05-17flatbuffers: Add version 2.0.6 (#30704)haralmha1-0/+1
2022-05-17GDAL: deprecate 2.X (#30668)Adam J. Stewart1-11/+11
2022-05-17Mark test_repo_last_mtime xfail on Python < 3.5 (#30696)Massimiliano Culpo1-1/+4
2022-05-17silo: Make HDF5 version deps more robust (#30693)Chuck Atkins4-12/+60
2022-05-17pindel: fixing compilation issues for gcc5+ (#28387)snehring2-18/+110
2022-05-17sed: add v4.8.0, set gnu_mirror_path per version (#30666)Alex Hedges1-1/+9
2022-05-17boost: constrain context-impl variant (#30654)Tim Haines1-1/+1
2022-05-17petsc: fix an error about handling a provider of Scalapack. (#30682)h-murai1-2/+1
2022-05-17cppcheck: add v2.7 (#30698)Jianshen Liu1-0/+1
2022-05-17Bazel: remove maintainer (#30697)Adam J. Stewart1-2/+0
2022-05-17autoconf-archive: Patch for nvhpc support and propagate search dirs (#30692)Chuck Atkins2-0/+37
2022-05-17runc: symlink sbin to bin to find it in $PATH (#30691)Alberto Madonna1-0/+1
2022-05-16sys-sage: new spack package (#30570)stepanvanecek1-0/+23
* sys-sage - adding new package * sys-sage: updated release verison * sys-sage: remove FIXMEs from the package * add libllvm dependency * sys-sage: remove unnecessary libllvm dependency Co-authored-by: Stepan Vanecek <stepan.vanecek@tum.de>
2022-05-16Add miopentensile-new recipe for ROCm-5.0.0 . ROCm-5.1.0 release (#29313)Sreenivasa Murthy Kolam2-0/+119
* miopentensile-new recipe for rocm-5.0.0 release * fix style checks * update the version for 5.1.0 release, avoid git download
2022-05-16py-cffconvert: new package (#30694)Michael Kuhn1-0/+25
2022-05-16Avoid calling a method on a NoneType object (#30637)andymwood1-1/+2
2022-05-16sigcpp: protect from missing prefix.share folder (#30686)iarspider1-1/+2
2022-05-16arm-forge: Versions up to 22.0.1 + minor updates (#30689)Nick Forrington1-2/+23
* arm-forge: Download via HTTPS Update download URL to use HTTPS (rather than HTTP) * arm-forge: Allow +probe to depend on python3 Allow python dependency required for arm-forge+probe to be python3 as well as 2.7.x * arm-forge: Add versions up to 22.0.1
2022-05-16aws-parallelcluster: add v2.11.7 (#30685)Francesco Giordano1-1/+2
2022-05-16fix pkgconfig dependencies (#30688)Michael Kuhn2-2/+2
pkgconfig is the correct dependency, pkg-config is a provider of it.
2022-05-16libfuse: add utils variant (#30675)Michael Kuhn1-2/+10
By default, libfuse install helper programs like `fusermount3`, which are mostly useless if not installed with setuid (that is, `+useroot`). However, their presence makes it complicated to use globally installed versions, which can be combined with a Spack-installed FUSE library. In particular, on systems that have a setuid fusermount3 binary, but no libfuse-dev installed, it is nice to be able to build libfuse with Spack, and have it call the system setuid executable.
2022-05-16Correcting include and library paths using patch file for RVS (#30294)renjithravindrankannath2-1/+390
* Correcting include and library paths using patch file for RVS to build following library files in spack. libperf.so.0.0 libpebb.so.0.0 libiet.so.0.0 libgst.so.0.0 libpqt.so.0.0 libmem.so.0.0 libbabel.so.0.0 * Correcting include and library paths using patch file for RVS to build following library files in spack. libperf.so.0.0 libpebb.so.0.0 libiet.so.0.0 libgst.so.0.0 libpqt.so.0.0 libmem.so.0.0 libbabel.so.0.0 * Replacing ROCM_PATH with RPATH in the deviceid.sh before installing in Spack build. * Reducing multiple enviroment variable for HIP and HSA path
2022-05-16[AMD][rocm-openmp-extras] - Update versions 5.0.0 through 5.1.0. (#30501)estewart081-15/+51
- Removed gl dependency. - Specify clang as cmake compiler as gcc was being improperly picked up. As a result, ffi include path was needed in C/CXX flags. Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-05-16Apply cyclades removal patch for the llvm-amdgpu package (#29376)Sreenivasa Murthy Kolam2-0/+115
* apply cyclades removal patch for the llvm-amdgpu spack package * update the changes with develop branch
2022-05-16Extrae: add support for Intel OneAPI (#30684)Tom Vander Aa1-1/+6
2022-05-16ParaView: -no-ipo for intel builds (#18193)Ethan Stam1-0/+5
2022-05-16bugfix: use deterministic edge order for `spack graph` (#30681)Todd Gamblin2-4/+6
Previously we sorted by hash values for `spack graph`, but changing hashes can make the test brittle and the node order seem nondeterministic to users. - [x] Sort nodes in `spack graph` by the default edge order, which takes into account parent and child names as well as dependency types. - [x] Update ASCII test output for new order.
2022-05-16subversion: added apxs support (#30381)Francine Lapid1-0/+4
2022-05-16frontier-client: adapt pacparser_setmyip function to new pacparser release ↵haralmha1-0/+20
(#29936)
2022-05-16eccodes, fix jasper again (#30635)Harmen Stoppels3-11/+16
* eccodes: jasper@:2 * Revert "jasper: avoid --gc-sections / hidden symbols" This reverts commit d1bc0f39c516a7dc1e941aa4a804b7468a200b75. * bump ecbuild, drop cmake constraint for newer versions * add ecbuild dep to eccodes@develop
2022-05-16bpp-suite and deps: urls to GitHub (#30665)snehring6-8/+62
* bpp-core: moving url to github. Fixing compilation issue. * bpp-phyl: moving url to github. * bpp-seq: moving url to github * bpp-popgen: new package * bpp-suite: moving url to github, new version. * bpp-popgen: removing unused cmake_args.
2022-05-16screen: add v4.9.0, add required build deps (#30667)Alex Hedges1-0/+4
2022-05-16treesub: change jdk dependency to java, add build to java dep. type (#30672)dlkuehn1-1/+1
Co-authored-by: David Kuehn <las_dkuehn@iastate.edu>
2022-05-16clblast: add new package (#30677)Umar Arshad1-0/+51
2022-05-16nextflow: add v22.04.1 (#30679)Diego Alvarez1-3/+4
2022-05-16openjdk: add 11.0.15+10, 17.0.3+7 (#30680)Diego Alvarez1-2/+16
2022-05-15mpich: add support for Mellanox HCOLL (#30662)Ken Raffenetti1-0/+12
Co-authored-by: Federico Ficarelli <federico.ficarelli@pm.me>
2022-05-15Introduce GroupedExceptionHandler and use it to simplify bootstrap error ↵Danny McClanahan4-37/+143
handling (#30192)
2022-05-15Fix for `spack stage` command not extracting packages in custom paths (#30448)Alberto Invernizzi2-7/+4
2022-05-14qt: add 5.15.4 (#30656)Michael Kuhn1-0/+1
2022-05-14uninstall: fix dependency check (#30674)Michael Kuhn1-1/+1
The dependency check currently checks whether there are only build dependencies left for a particular package. However, the database also contains uninstalled packages, which can cause the check to fail. For instance, with `bison` and `flex` having already been uninstalled, `m4` will have the following dependents: ``` bison ('build', 'run')--> m4 flex ('build',)--> m4 libnl ('build',)--> m4 ``` `bison` and `flex` should be ignored in this case because they are not installed anymore. Fixes #30673
2022-05-14Update GitLab environment variable name (#30671)Zack Galbreath1-2/+2
Use the IAM credentials that correspond to our new binary mirror (s3://spack-binaries vs. s3://spack-binaries-develop)
2022-05-14[py-pyworld] Limiting numpy version. See: ↵Jen Herting1-1/+1
https://zenn.dev/ymd_h/articles/934a90e1468a05 (#30670)
2022-05-13CEED v5.0 release (#29710)Cameron Smith8-18/+180
* ceed50: add ceed 5.0.0 and pumi 2.2.7 * libceed-0.10 * ceed50: add omegah * omega-h: mpi and cuda builds work * omega-h: fix style * New package: libfms * New version: gslib@1.0.7 CEED: add some TODO items for the 5.0 release * ceed: variant name consistent with package name * LAGHOS: allow newer versions of MFEM to be used with v3.1 * LIBCEED: add missing 'install' target in 'install_targets' * CEED: address some TODO items + some tweaks * MFEM: add new variant for FMS (libfms) * CEED: v5.0.0 depends on 'libfms' and 'mfem+fms' * RATEL: add missing 'install' target in 'install_targets' * CEED: add dependency for v5.0.0 on Ratel v0.1.2 * CEED: add Nek-related dependencies for ceed@5.0.0 * CEED: v5.0.0 depends on MAGMA v2.6.2 * libCEED: set the `CUDA_ARCH` makefile parameter * libCEED: set the `HIP_ARCH` makefile parameter Co-authored-by: Jed Brown <jed@jedbrown.org> Co-authored-by: Veselin Dobrev <dobrev@llnl.gov> Co-authored-by: Veselin Dobrev <v-dobrev@users.noreply.github.com>
2022-05-13New package: py-pyworld (#28641)Jen Herting1-0/+22
* espnet first build with depends * added cython>=0.24.0' and type='build' * [py-pyworld] updated copyright Co-authored-by: Sid Pendelberry <sid@rit.edu>
2022-05-13Preserve Permissions on .zip extraction (#30407)John W. Parent1-9/+11
#24556 merged in support for Python's .zip file support via ZipFile. However as per #30200 ZipFile does not preserve file permissions of the extracted contents. This PR returns to using the `unzip` executable on non-Windows systems (as was the case before #24556) and now uses `tar` on Windows to extract .zip files.