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2022-01-31mesa18: depends on python@3.8.99 max (#28345)eugeneswalker1-1/+1
2022-01-31Update Packages: py-asgiref, py-h11, py-websockets (#28649)Pat Riehecky3-2/+13
2022-01-31Add checksum for py-cryptography 3.2.1 (#28685)iarspider1-0/+1
2022-01-31changing site_packages_dir to python_platlib for gptune (#28669)liuyangzhuan2-4/+5
* added package gptune with all its dependencies: adding py-autotune, pygmo, py-pyaml, py-autotune, py-gpy, py-lhsmdu, py-hpbandster, pagmo2, py-opentuner; modifying superlu-dist, py-scikit-optimize * adding gptune package * minor fix for macos spack test * update patch for py-scikit-optimize; update test files for gptune * fixing gptune package style error * fixing unit tests * a few changes reviewed in the PR * improved gptune package.py with a few newly added/improved dependencies * fixed a few style errors * minor fix on package name py-pyro4 * fixing more style errors * Update var/spack/repos/builtin/packages/py-scikit-optimize/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * resolved a few issues in the PR * fixing file permissions * a few minor changes * style correction * minor correction to jq package file * Update var/spack/repos/builtin/packages/py-pyro4/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * fixing a few issues in the PR * adding py-selectors34 required by py-pyro4 * improved the superlu-dist package * improved the superlu-dist package * moree changes to gptune and py-selectors34 based on the PR * Update var/spack/repos/builtin/packages/py-selectors34/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * improved gptune package: 1. addressing comments of tldahlgren in PR 26936; 2. adding variant openmpi * fixing style issue of gptune * changing file mode * improved gptune package: add variant mpispawn which depends on openmpi; add variant superlu and hypre for installing the drivers; modified hypre package file to add a gptune variant * fixing style error * corrected pddrive_spawn path in gptune test; enforcing gcc>7 * fixing style error * setting environment variables when loading gptune * removing debug print in hypre/package.py * adding superlu-dist v7.2.0; fixing an issue with CMAKE_INSTALL_LIBDIR * changing site_packages_dir to python_platlib * not using python3.9 for py-gpy, which causes due to dropped support of tp_print * more replacement of site_packages_dir Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-01-31Fix SECURITY.md file by adding v0.17.x to supported versions (#28661)Massimiliano Culpo1-0/+1
2022-01-31julia: add targets constraint to llvm (#28682)Harmen Stoppels1-1/+1
2022-01-31trilinos: Fix cxxstd effects for Trilinos versions <13 (#28663)Paul Kuberry1-6/+13
2022-01-29py-horovod: add py-tensorflow-estimator dependency (#28674)Adam J. Stewart1-0/+1
2022-01-29New package: py-kaldiio (#28643)Jen Herting1-0/+19
* espnet first build with depends * fixed flake8 * updated to lastest version and removed python dependency * changed to pypi and version 2.17.2 * [py-kaldiio] depends on py-pytest-runner * [py-kaldiio] updated copyright Co-authored-by: Sid Pendelberry <sid@rit.edu>
2022-01-29prmon: better testing, fix checksums (#28672)Valentin Volkl1-2/+15
* prmon: make sure integration tests do not run in parallel Some integration tests fail if not run on an otherwise idle machine. * prmon: run unittests based on googletest * prmon: fix checksums
2022-01-29superlu: simplify cmake logic and fix cuda conflict (#28658)Seth R. Johnson1-46/+48
* superlu-dist: use CMakePackage helper functions * Fix #28609 It's OK to have CUDA in the dependency tree as long as it's not being used for superlu-cuda.
2022-01-28Update Packages: py-celery py-kombu py-amqp py-pytz py-click-plugins (#28648)Pat Riehecky6-8/+39
2022-01-28New Package: py-python-dotenv (#28651)Pat Riehecky1-0/+24
2022-01-28Update Package: py-pre-commit (#28665)Pat Riehecky1-3/+7
2022-01-28macholib, altgraph: update vendored dependency (#28664)Massimiliano Culpo25-1253/+1345
2022-01-28Update actions/setup-python to latest version (#28634)Massimiliano Culpo4-26/+14
2022-01-28prmon: add up to v3.0.1, add new maintainers (#28657)Graeme A Stewart1-3/+7
* Update prmon package to latest versions Add recent versions of the prmon package Add the spdlog dependency for versions >=3 Add package developers as additional maintainers Update name of development branch to 'main' * Correct checksum for v3.0.1
2022-01-28librsb: added v1.2.0.11/v1.3.0.0 (#28637)Michele Martone1-1/+4
2022-01-28fpchecker: add v0.3.5 (#28639)Tim Haines1-0/+1
Co-authored-by: Tim Haines <thaines@cs.wisc.edu>
2022-01-28spectre: allow disabling debug symbols (#28511)Nils Leif Fischer1-7/+30
* spectre: allow disabling debug symbols * spectre: fix PCH builds * spectre: support builds with shared libs
2022-01-28metabat: switch to CMakePackage, deprecate old versions (#28384)Desmond Orton1-3/+5
2022-01-28ParaView: Require Ninja for builds (#28650)kwryankrattiger1-0/+3
2022-01-28slepc: switch from using -with-arpack-dir to --with-arpack-include/lib ↵Satish Balay1-11/+18
options (#28654) Also save configure.log, make.log
2022-01-28py-torch: add v1.10.2 (#28653)Adam J. Stewart2-0/+3
2022-01-28Add more ReFrame versions (#28655)Vasileios Karakasis1-0/+2
2022-01-28at-spi2-core: patch for version 2.40.1 and beyond (#28497)Desmond Orton1-0/+4
at-spi2-core is automatically selecting dbus-broker and enabling systemd if it finds dbus-broker-launch which some systems might have even without systemd being part of the actual spack environment. This is not ideal for a spack package.
2022-01-28ucx backtrace-detail variant (#28625)Tom Vander Aa1-0/+4
ucx has the configure option --[enable|disable]-backtrace detail. This option is not explicitely set by spack, causing problems on my system, because ./configure does not find the bfd.h header file / libbfd.so library. Added variant + dependencies (binutils). Disabled by default
2022-01-28gptune: add variants (mpispawn, hypre) (#27733)liuyangzhuan5-86/+626
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-01-28trilinos: version 12 cxxstd flags (#28582)Toyohisa Kameyama1-0/+5
* trilinos: version 12 requires cxxstd=11 * trilinos: use cmake version 3.21 or old when trilinos version 12 * conflict cxxstd=17 and cmake@3.2.[01] * trilinos: version 12 requires cxxstd=11. * Trilinos_CXX11_FLAGS is set to ' ' to avoid inject C++11 flag. * set Trilinos_CXX11_FLAGS only version 12 or older.
2022-01-27Trilinos: minimize E4S CUDA build (#28591)Seth R. Johnson2-26/+25
* trilinos: update dependencies Use the tribits deps to clarify some dependencies, and group some together using `with` statements, eliminating some transitive conflict duplication. * trilinos: Restricit cuda incompatibility * e4s: vastly reduce number of packages in trilinos-cuda build Not clear who the customers of cuda-enabled trilinos are, or what options they need, or which sets of options conflict... * e4s: remove ~wrapper from trilinos+cuda
2022-01-27New package: py-wordcloud (#28482)Jen Herting1-0/+20
* [py-wordcloud] created template * [py-wordcloud] - added dependencies - added homepage - added description - removed fixmes - updated copyright
2022-01-27New package: py-spectral (#28481)Jen Herting1-0/+22
* simple build of spectral * fixed trailing whitespace for style * [py-spectral] updated copyright * [py-spectral] runtime imports py-numpy Co-authored-by: Sid Pendelberry <sid@rit.edu>
2022-01-27New package: py-deepecho (#28488)Jen Herting1-0/+25
* [py-deepecho] created template * [py-deepecho] - added dependencies - added homepage - added description - removed fixmes - updated copyright * [py-deepecho] flake8 * [py-deepecho] removed .999 * [py-deepecho] added dependency on py-pytest-runner
2022-01-27python: 3.9.10, 3.10.2 (#28635)Harmen Stoppels1-1/+3
2022-01-27Pin the version of "coverage" in CI to 6.2 (#28638)Massimiliano Culpo1-5/+5
Hotfix for coverage v6.3 blocking our CI workflows
2022-01-27xyce: Add cxxstd variant with only valid value of 11 (#28616)Paul Kuberry1-0/+10
2022-01-27gpi-space: add new package (#27989)Max Zeyen1-0/+68
2022-01-27conduit: add v0.8.1 and patch to add algorithm for std sort (#28618)Gregory Lee2-0/+12
2022-01-27Update CMake to 3.21 in LBANN-related projects (#28507)Tim Moon3-3/+6
* Update CMake to 3.21 in LBANN-related projects * Allow CMake 3.17 for older versions of LBANN, Hydrogen, Aluminum
2022-01-27Vtkm kokkos variant (#28363)kwryankrattiger1-35/+42
* VTK-m: Make vtk-m consistent with ROCmPackage * VTKm: Add kokkos variant Specifying +kokkos will enable kokkos backend. Specifying +kokkos with +rocm will require a kokkos with a ROCm backend. Specifying +cuda enables VTK-m native CUDA backend. VTK-m native cuda backend is not compatible with the kokkos +cuda backend. * VTK-m: Add cuda_native variant Required to allow specifying a vtk-m spec the selects a cuda_arch and predictably propagate that to the underlying kokkos dependency. This also makes explicit selecting kokkos with a cuda backend or using the VTK-m cuda backend.
2022-01-26New packages: py-quaternionic and py-spherical (#28611)Nils Leif Fischer2-0/+49
2022-01-26Mesa(18): Use libllvm virtual package (#28365)kwryankrattiger7-11/+81
* Mesa(18): Use libllvm virtual package * Mesa patch configuration Patch Mesa to define LLVM_VERSION_SUFFIX if llvm is pre-release * Patch llvm-config to define LLVM_VERSION_SUFFIX
2022-01-26cmake: new version 3.22.2 (#28608)Harmen Stoppels1-0/+1
2022-01-26Ensure "spack unit-test" can bootstrap clingo (#28572)Massimiliano Culpo2-1/+8
2022-01-26lhapdfsets: add new package (#25477)Valentin Volkl3-34/+1120
2022-01-26vbfnlo: use patch method and filter_file instead of patch directive (#28506)haralmha2-14/+4
* Patch only for @3.0.0beta5 * Replace version specific patch file with patch function Co-authored-by: root <root@hahansencs8.cern.ch>
2022-01-26Print 'Waiting for another process to install x, y, z' in distributed builds ↵Harmen Stoppels1-0/+53
(#28535) Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-01-25trilinos: Enable LAPACK functionality in amesos2 (#28577)Seth R. Johnson1-0/+1
2022-01-26Bugfix: Tasmanian stand alone test (#28496)Richarda Butler1-6/+52
2022-01-25alluxio: new version v2.7.2 (#28589)Ryan Marcellino1-0/+1
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