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2020-06-17slurm: Fix build with gcc@10:Michael Kuhn1-0/+9
gcc@10: defaults to -fno-common, which breaks slurm up to version 20-02-1. For more details, see https://gcc.gnu.org/gcc-10/porting_to.html
2020-06-17openmpi: options for local transport (#16831)Sergey Kosukhin5-30/+309
2020-06-17axom conduit mfem build fixes (#17121)Chris White3-18/+91
* honor global compiler flags * Honor debug variant when using global compiler flags * Add cppflags to c/cxx flags, clarify flag handling
2020-06-17Split hepmc Into hepmc and hepmc3 (#16892)vvolkl3-46/+59
2020-06-17FrontISTR: various updates to the package (#17089)Michio Ogawa1-6/+13
* Added maintainers * Refined dependencies * Changed git url
2020-06-17openmpi: fixes for NAG compiler (#17073)Sergey Kosukhin7-21/+700
* openmpi: fixes for NAG compiler * openmpi: more fixes
2020-06-17Fix/clarify some trilinos variants/dependencies (#17006)Seth R. Johnson1-5/+4
- Parallel HDF5 isn't required -- the comment seems to be about a transitive dependency with pnetcdf. - Boost usage should respect the variant, not automatically be reenabled when choosing DTK.
2020-06-17py-tensorflow: Update for use with Fujitsu compiler (#17088)takanori-ihara2-0/+21
* py-tensorflow: Update for use with Fujitsu compiler * py-tensorflow: remove -march option * fix flake8 error
2020-06-16New package: lynx (#17099)darmac1-0/+29
2020-06-16lua: requires -ltermcap when building (#17108)Muhammad Haseeb1-1/+1
2020-06-16libnetworkit: add version 7.0 (#17111)Fabian Brandt1-0/+1
2020-06-16helics: Add version 2.5.2Ryan Mast1-0/+1
2020-06-16vecgeom: add version 1.1.7 (#17120)Seth R. Johnson1-0/+6
2020-06-16Modified for Fujitsu compiler. (#17124)h-denpo3-12/+49
2020-06-16Add patch for older versions of py-tensorflow (#17122)Glenn Johnson5-0/+64
Versions of py-tensorflow between versions 1.1 and 1.14 need a patch to avoid an import error on the cloud package even if built without support for the cloud package.
2020-06-16mxnet: avoid GNU parallel shuffle without openmp. (#17095)Toyohisa Kameyama2-0/+14
2020-06-16bazel: Update for use with Fujitsu compiler (#16860)takanori-ihara3-0/+62
* bazel: Update for use with Fujitsu compiler * bazel: Fix for use with Fujitsu compiler * bazel: Fix flake8 error * bazel: add conflicts setting for use with Fujitsu compiler * fix flake8 error * fix flake8 error
2020-06-16Add compiler option to use with Fujitsu compiler (#17067)takanori-ihara1-1/+3
* Add compiler option to use with Fujitsu compiler * Fix flake8 error * remove 1-1_fcc_tf_patch.patch * fix flake8 error
2020-06-16Doc: E4S Build Cache Link (#16986)Axel Huebl1-0/+6
Link to the E4S build cache in the according section of the docs.
2020-06-16pango: add libffi, glib, and other dependencies (#12384)Geoffrey Oxberry1-1/+9
2020-06-16ruby: add version 2.7.1 (#17112)Andrew W Elble1-0/+1
2020-06-16VTK: add version 9.0.0; update Python dependency constraints (#17019)Tom Payerle1-5/+15
In Python 3.8, the reserved "tp_print" slot was changed from a function pointer to a number, which broke the Python wrapping code in vtk@8 (causing "cannot convert 'std::nullptr_t' to 'Py_ssize_t'" errors in various places). This is fixed in vtk@9.0.0. This patch: 1) adds vtk@9.0.0 2) updates depends_on constraints to only use python@3.8: for vtk@9: vtk@:8 depends on python@2, and vtk@8.0.1:8.9.9 depends on python@:3.7 3) Adds CMake flag VTK_PYTHON_VERSION=3 when using python@3 with vtk@9
2020-06-16Yaml spec parsing corner case (#17101)psakievich2-7/+28
* Catch yaml filename corner case in spec parser * improved regex and remove redundant error checking Co-authored-by: Gregory Becker <becker33@llnl.gov>
2020-06-16fix docker image entrypoints (#17105)Omar Padron7-436/+269
Also removes extraneous prompt and ssh handling logic.
2020-06-16python: fix distutils for python modules (e.g. matplotlib) with C and C++ ↵Joseph Ciurej4-0/+772
source files (#16856) * python: adding a distutils fix to improve build compatibility for C++ extension modules (e.g. py-matplotlib) * python: added C/C++ distutils patches for python@3.6:3.8
2020-06-16gobject-introspection: build sequentially when using the Fujitsu compiler. ↵Tomoki, Karatsu1-0/+4
(#17092)
2020-06-16reframe: fix package bugs with v3.0 (#17104)victorusu1-3/+3
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-06-15ROOT: set LD_LIBRARY_PATH when ~rpath (#16899)vvolkl1-0/+4
Allow Spack to build with ROOT as an external dependency by setting LD_LIBRARY_PATH: given that the external package was not built by Spack, dependents would not be able to locate libraries using RPATHs when running ROOT binaries.
2020-06-16Add new package: lzop (#17098)darmac1-0/+23
2020-06-15chill: Update dependency versionsJohn Jolly1-4/+5
Specified Python to be v2.7 only, as Python3 support is not currently implemented in chill. Update chill dependency versions for the following libraries to the specific versions: * rose: v0.9.13.0 * bison: v3.4.2 Both rose and iegenlib are build time dependencies, but are also run time dependencies. Added 'run' to the build type for both dependencies.
2020-06-15hdf5: fix libtool files (#17009)Sergey Kosukhin3-1/+52
2020-06-15CUDA: remove preexisting log file before install (#17018)Andrew W Elble1-0/+13
cuda: 10.1 and onward, installers will crash if /tmp/cuda-installer.log exists Try to help if user owns the file, otherwise try to provide useful info. Clean up the file post-install to try to avoid the whole issue.
2020-06-15[py-torchvision] added dependency of ffmpeg (#17032)Jen Herting1-0/+2
* [py-torchvision] added dependency of ffmpeg * [py-torchvision] needs ffmpeg >= 3.1. See: https://github.com/pytorch/vision/issues/1597 * [py-torchvision] ffmpeg dependency is only for py-torchvision versions >= 0.4.2.
2020-06-15pcre2: add version 10.35; JIT support (#17037)Amjad Kotobi1-0/+6
2020-06-16SLEPc: added v3.13.3 (#17085)Jose E. Roman1-0/+1
2020-06-16openblas: added v0.3.10. (#17086)Kai Torben Ohlhus1-0/+1
[OpenBLAS 0.3.10](https://github.com/xianyi/OpenBLAS/releases/tag/v0.3.10) was released.
2020-06-16arrayfire: added new package at v3.7.0 (#15598)Sinan1-0/+46
Co-authored-by: Sinan81 <Sinan81@github> Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-06-16netdata: added new package at v1.22.1 (#17094)darmac1-0/+22
2020-06-16cyrus-sasl: added new package at 2.1.27 (#17096)darmac1-0/+26
2020-06-16memtester: added new package at v4.3.0 (#17097)darmac1-0/+24
2020-06-16heffte: added v1.0 (#17102)Miroslav Stoyanov2-11/+44
2020-06-16Update master to main for RAJA and Umpire (#17107)David Beckingsale2-2/+2
2020-06-16ffb: prevent the architecture to be always "x86_64" (#17093)h-denpo1-0/+4
2020-06-15README: Update LLNL release number to Apache-2.0/MIT version (#17109)Todd Gamblin1-1/+1
The release number in the README had not been updated since we did the relicense to Apache-2.0 OR MIT in v0.12.0. LLNL-CODE-811652 is Spack's new LLNL release number.
2020-06-15dateutils: add version 0.4.7 (#17106)Matthias Diener1-0/+1
2020-06-15Add 4.5 release to cubelib (#17090)Itaru Kitayama2-0/+2
2020-06-15Skip failing test on MacOS (#17072)Massimiliano Culpo2-2/+4
* Skip failing test on MacOS * Update setup-python action and unpin coverage
2020-06-15grafana: added new package at v6.7.3 (#16788)darmac1-0/+27
2020-06-14Package/py-lmfit: add new version (#16975)Sinan1-4/+13
* save edits * tidy up * Update var/spack/repos/builtin/packages/py-lmfit/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * add python version constraints Co-authored-by: Sinan81 <sbulut@3vgeomatics.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Sinan81 <Sinan81@github>
2020-06-13hpctoolkit: add version 2020.06.12 (#17081)Mark W. Krentel1-3/+5
Add versions 2020.06.12 and develop. Switch default for variant papi to true.
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