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* SL-637
* https://redmine.gromacs.org/issues/2927
* tested with cmake 3.14.4 and 3.15.1
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* blaze: added version 3.5
* blaze: added access to bleeding edge
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This updates the flatcc package to have the latest version.
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1. add dependency for libxext2.
2. SSEMATH is off is aarch64.
3. reformat comment for flake8.
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* Plink 1.9 Beta 6.10 added
* Typo Fix
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* newpackage/tippecanoe
* make flake8 happy
* add "r" for raw text
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* hunspell: write autoreconf method to triage error
This commit fixes the error described in GitHub issue
`AutotoolsPackage` class attempts to call `libtoolize`, which doesn't
exist on macOS systems that externally install `libtool` in Spack via
Homebrew -- Homebrew installzes GNU libtoolize as `glibtoolize`.
The fix is to call `autoreconf` only, and GitHub pull request #12344
makes this change in
AutotoolsPackage (https://github.com/spack/spack/pull/12344). However,
while waiting for that pull request to be merged, overriding the
`autoreconf` method achieves the same result for a self-contained
fix. This self-contained fix is necessary to fix a dependency bug in
the `hunspell` package.
* hunspell: add missing gettext dependency
* hunspell: add version 1.7.0
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* Fixed broken iegenlib package
* [IEGenLib] fixed for style
* [IEGenLib] style fixes
* [IEGenLib] removed CMAKE_BUILD_TYPE option from config_args
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* stack concretization: fix handling of variant names with dashes
* spec_list: bugfix for handling nested matrices
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* add new package cromwell
* fix flake8 errors, add cromwell-womtool package
* change name of cromwell to cromwell-server
* renamed cromwell-server to just cromwell
* update description to what is in the project docs
* fixing format call for python2.6 compatibility
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* new package: aria2
* tidy up
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* Allow Spack to uninstall external extensions without permissions
Raise when self.projections is not empty
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* Add comment that 1.0.1 versions are no longer supported
* Add comment that 1.0.2 versions are only supported up to
December 2019
* Add versions 1.0.2s, 1.0.2r, and 1.0.2p
* Add versions 1.1.0k, 1.1.0j, and 1.1.0i
* Add version 1.1.1c
* Add comment that 1.1.0 versions are only supported up to
September 2019
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It's no longer possible to set compiler flags under as an entry under
"paths" in compilers.yaml; instead the user must list these under the
"flags" section. This updates the docs accordingly.
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Spack stacks drop invalid dependencies applied to packages by a
spec_list matrix operation
Without this fix, Spack would raise an error if orthogonal dependency
constraints and non-dependency constraints were applied to the same
package by a matrix and the dependency constraint was invalid for
that package. This is an error, fixed by this PR.
An example failing configuration:
spack:
definitions:
- packages: [libelf, hdf5+mpi]
- compilers: ['%gcc']
- mpis: [^openmpi]
specs:
- matrix:
- $packages
- $compilers
- $mpis
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This reverts commit 54e3bc31f991200688044431f57ad8b3a25c12e8.
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5f74f22 enabled installing compilers for dependencies but not for the root package (and in particular not for DAGs which consist of one package)
this enables bootstrapping compilers for both types of DAGs
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* Making STK package in Trilinos more general.
* Remove comment about seacas exodus settings.
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* ncbi-toolkit: fix compiler+version restriction (spack/spack#12276)
* ncbi-toolkit: update urls for current and archive releases
* ncbi-toolkit: add compatibility for boost@1.69:
* ncbi-toolkit: add compatibility for boost@1.70:
* ENH: Add debug variant to significantly reduce install size
* ncbi-toolkit: add archive url for 22_0_0 (spack/spack#12278)
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* Remove unnecessary setting with buggy prefix
Spack adds installation prefix by default and the "self." is missing
* Add version 19.8.1 of PLASMA
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Resolves #11932.
Move the PIC flags from CFLAGS on the configure line to the spack
compiler wrapper for ncurses. The problem with the configure line for
autotools is that specifying CFLAGS sets the entire flags, thus
deleting the flags that configure would add itself.
By default, if CFLAGS is unspecified, then configure picks a sensible
default of `-g -O2`. But adding `-fPIC` erases these and it ends up
building unoptimized.
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- Add comments to explain that `install_dependency_symlinks` and `flatten_dependencies` are actually used.
- Add a test that exercises the routines.
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* Add patch to detect newer versions of MacOS and to fix a typo in
configure.ac (AM_LIBTOOLSFLAGS should be AM_LIBTOOLFLAGS)
* Remove variant declarations for unsupported languages
* Add support for quartz on MacOS
* Add optional X Window support
* Specifically build against qt@4 when building QT support
* Point to appropriate C++ standard libraries when building with
Clang on MacOS
* Disable parallel build (for all platforms)
* Increase verbosity of configure script by adding
--disable-silent-rules
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* Add numpy 1.17.0
* Overhaul numpy package
* Flake8 fixes
* Undefined reference fix
* HeaderList and LibraryList need an arg
* veclibfort has no headers
* Add patch for older versions of py-numpy
* Remove py-meep hack from py-numpy package
* libflame: always add max arg hack flag
* Fix build with GCC 4.8
* Compiler flags come from self.compiler
* Only apply -std=c99 to cflags
* Try to fix libflame package
* Fix ATLAS build on macOS
* --force-clang flag added in 3.10.3
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- ensure that `$spack` and other variables are substituted into mirror
paths
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* stacks: Fix env.write to properly write references
* stacks: regression test for 12095
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* fltk: fix about variable types
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Before this commit we were sending reports also for unit tests that
were not collecting coverage data.
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* bump eospac version
* Revert "bump eospac version"
This reverts commit 835b1f822d8c083f6ab9eb17222c00409e8eb3da.
* fix-up musl-gcc wrapper script
* address adamjstewart's comments
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When building with GCC, c-blosc requires the -std=gnu99 flag.
Before this patch, the build would only add -std=gnu99 for GCC when
building on specific architectures; this adds -std=gnu99 in all cases
when using GCC.
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* Move new packages from tutorial to builtin
* Remove unicode character from docstring
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* amrex: add version 19.08
* amrex: update sundials dependency for @19.08
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When loading `openpmd-api` as a lib to build outside of
spack or to build depending spack packages, the "CMake-PUBLIC"
header-only library MPark.Variant must be available. Also,
the `*Config.cmake` package must be able to find dependent
libs if used.
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