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2020-10-21clp (#19418)Andrew W Elble1-1/+6
2020-10-21Add Gosam (#19401)iarspider1-0/+26
* Add recipe for qgraf * Revert "Add recipe for qgraf" This reverts commit 76783f73867a32b4a96e980e31a433ed3c0037fd. * Add gosam * Flake-8 * Flake-8 * Delete gosam-1.2.4.patch Remove patch * Remove patch from recipe * Changes from MR Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch>
2020-10-21tests: increase tolerance of termios tests (#19456)Todd Gamblin1-2/+6
Synchronization on GitHub macOS runners seems to be very slow, and frequently the foreground/background tests fail due to the race this causes. This increases the tolerance for slowness a bit more, to allow up to 4 spurious output lines in the tests. This should hopefully result in no more false negatives on these tests for macOS on GitHub.
2020-10-21Added _poll_lock exception tests (#19446)Tamara Dahlgren1-0/+26
2020-10-21new package: py-tinyarray (#19454)Tom Payerle1-0/+29
2020-10-21New package: py-autograd-gamma (#19426)Andrew W Elble1-0/+18
* py-autograd-gamma * missing dependencies
2020-10-21Add Njet (#19399)iarspider1-0/+23
* Add recipe for qgraf * Revert "Add recipe for qgraf" This reverts commit 76783f73867a32b4a96e980e31a433ed3c0037fd. * Add NJet * flake-8 * Flake-8 Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch>
2020-10-21Add qgraf (#19404)iarspider2-1/+25
* Add recipe for qgraf * Revert "Add recipe for qgraf" This reverts commit 76783f73867a32b4a96e980e31a433ed3c0037fd. * Add qgraf * Update package.py Changes from review * Changes from MR * Fix for URLs containing @ symbol Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-21osi (#19424)Andrew W Elble1-0/+27
2020-10-21shell support: make `which spack` output intelligible (#19256)Todd Gamblin1-6/+17
Zsh and newer versions of bash have a builtin `which` function that will show you if a command is actually an alias or a function. For functions, the entire function is printed, and our `spack()` function is quite long. Instead of printing out all that, make the `spack()` function a wrapper around `_spack_shell_wrapper()`, and include some no-ops in the definition so that users can see where it was created and where Spack is installed. Here's what the new output looks like in zsh: ```console $ which spack spack () { : this is a shell function from: /Users/gamblin2/src/spack/share/spack/setup-env.sh : the real spack script is here: /Users/gamblin2/src/spack/bin/spack _spack "$@" return $? } ``` Note that `:` is a no-op in Bourne shell; it just discards anything after it on the line. We use it here to embed paths in the function definition (as comments are stripped).
2020-10-21unzip: fix build for XCode 12 on macosx (#19453)Todd Gamblin1-2/+9
- [x] `build_targets` should use `macosx` on macOS, `generic` on other systems - [x] enable `LARGE_FILE_SUPPORT` by default
2020-10-21Add Madgraph 2.8.1 (#19400)iarspider4-47/+5
* Add recipe for qgraf * Revert "Add recipe for qgraf" This reverts commit 76783f73867a32b4a96e980e31a433ed3c0037fd. * Update madgraph to 2.8.1 * Changes from MR * Changes from MR Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch>
2020-10-21New package: py-fastdtw (#19427)Andrew W Elble1-0/+21
* py-fastdtw * cython is buildtime dep
2020-10-21Lapackpp package update (#19447)G-Ragghianti2-11/+28
* Updated blaspp package * Modified lapackpp for newest release * Formatting * Updates to lapackpp package for new version * Added dependency on cblas * Removed cblas dependency * updated to lapackpp * Added new version for blaspp and lapackpp * Removed debugging output * Converted version matching logic for for loop
2020-10-21py-drmaa: new package at 0.7.9 (#19451)Justin S1-0/+18
2020-10-21py-sqlalchemy-utils: new package at 0.36.8 (#19449)Justin S1-0/+19
2020-10-21py-jsonref: new package at 0.2 (#19448)Justin S1-0/+17
2020-10-21spla: Add version 1.2.1 (#19436)Simon Frasch1-0/+15
2020-10-21Skip malformed spec strings when searching for externals (#19438)Massimiliano Culpo2-12/+17
fixes #19266 fzf search method has also been updated Co-authored-by: Tom Scogland <tom.scogland@gmail.com>
2020-10-21mpich : add python build-only dependency (#19403)Sajid Ali1-0/+5
* mpich: yaksa configure fix modified: var/spack/repos/builtin/packages/mpich/package.py * typo * python is not needed when building from preconfigured tarballs * add maintainers
2020-10-21New package: py-autograd (#19425)Andrew W Elble1-0/+27
* py-autograd * add missing dependencies
2020-10-21Added FFLAGS for apple-clang:11 (#17935)Lígia Diana Amorim1-0/+3
* Added FFLAGS for apple-clang:11 * Added issue # * Update var/spack/repos/builtin/packages/mpich/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-21gromacs: fix SIMD argument for ppc64le (#19435)Massimiliano Culpo1-1/+1
fixes #19414
2020-10-21veloc: Add missing openssl dependency (#19437)Chuck Atkins1-0/+1
2020-10-21scipoptsuite (#19430)Andrew W Elble1-0/+30
2020-10-21py-hdbscan (#19428)Andrew W Elble1-0/+31
2020-10-21glog (#19423)Andrew W Elble1-0/+1
2020-10-21gflags (#19422)Andrew W Elble1-0/+1
2020-10-21coinutils (#19421)Andrew W Elble1-0/+19
2020-10-21Update git to 2.29.0 (#19415)albestro1-0/+5
2020-10-21update version to avoid compile error (#19363)darmac1-2/+4
* update version to avoid compile error * Update var/spack/repos/builtin/packages/r-rgdal/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-21Provide doxygen@1.8.20. (#19412)Kelly (KT) Thompson1-0/+1
2020-10-21py-cvxopt: refine dependency @1.1.9 and update version to @1.2.5 (#19385)darmac1-1/+3
* refine dependency @1.1.9 and update version to @1.2.5 * refine depends_on() for python
2020-10-21Add FORM (#19397)iarspider1-0/+27
* Add recipe for qgraf * Revert "Add recipe for qgraf" This reverts commit 76783f73867a32b4a96e980e31a433ed3c0037fd. * Add FORM * Update package.py Changes from review Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch>
2020-10-21Add QD (#19402)iarspider1-0/+26
* Add recipe for qgraf * Revert "Add recipe for qgraf" This reverts commit 76783f73867a32b4a96e980e31a433ed3c0037fd. * Add QD * Update package.py Changes from review Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch>
2020-10-21Add Allinea to cray-libsci (#19232)Chris Richardson1-0/+4
2020-10-21quantum-espresso: fix build fail @6.6 and add conflicts a64fx. (#19383)Toyohisa Kameyama1-1/+9
* quantum-espresso: fix build fail @6.6 and add conflicts a64fx. * get patch to gitlab. * Add +patch
2020-10-21CMakePackage: added 'ipo' variant (#18374)Omri Mor1-1/+17
+ipo sets CMAKE_INTERPROCEDURAL_OPTIMIZATION=ON The option is not supported for CMake < 3.9
2020-10-21Make url_fetch test independent of locale settings (#19390)Massimiliano Culpo1-1/+1
2020-10-21Change 'any' to wildcard for variants (#19381)Greg Becker7-103/+49
2020-10-20Add new packages: ispc & embree (#19361)Martin Aumüller4-0/+176
* Add new package: ispc * Add new package: embree
2020-10-20Thepeg fix (#19405)iarspider1-0/+2
* Add recipe for qgraf * Revert "Add recipe for qgraf" This reverts commit 76783f73867a32b4a96e980e31a433ed3c0037fd. * Fixes for thepeg Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch>
2020-10-20mfem: Fix support for SUNDIALS and PETSc features (#19326)Josh Essman1-6/+13
* mfem: specify PETSC_DIR, link correct sundials libraries * fix: only use PETSC_DIR directly for static builds * fix: only use sundials nvecmpiplusx for MFEM 4.2+
2020-10-20tau unwind patch: only patch 2.29, not 2.29.1 (#19409)eugeneswalker1-1/+1
2020-10-20Lhapdf extends python (#19398)iarspider1-0/+2
* Add recipe for qgraf * Revert "Add recipe for qgraf" This reverts commit 76783f73867a32b4a96e980e31a433ed3c0037fd. * LHAPDF should extend Python to get env variables correct Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch>
2020-10-20deal.II: Add more conflicts due to symbol clashes between dependencies (#19408)Jean-Paul Pelteret1-1/+10
2020-10-20py-archspec: added new package at v0.1.1 (#19395)Massimiliano Culpo3-11/+30
2020-10-20axel: fix build error (#19387)darmac1-0/+4
2020-10-20mesa: Restrict llvm to < 11 (#19393)Chuck Atkins1-1/+1
2020-10-20refine setuptools version to avoid spec conflict (#19384)darmac1-1/+1
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