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2020-03-11kealib: moved to github, added v1.4.12 (#15436)Neil Flood1-3/+4
2020-03-10Add valgrind variant to petsc (#15427)Hector1-1/+4
* Add PETSc valgrind dependency * Remove +debug on valgrind dependency * enh variant description
2020-03-10Fix OpenBLAS 0.2 build, 0.38+ Intel builds, and variant name (#15419)Seth R. Johnson2-19/+44
* Remove ARCH argument in OpenBLAS < 0.3.0 * Fix Intel OpenBLAS that uses lapack 0.3.9 * Improve variant name consistency see https://github.com/spack/spack/issues/15239
2020-03-10gcc: backporting fix for glibc 2.31 (#15403)Mathias Anselmann3-0/+114
* backporting fix for building gcc >= 8.1.0 and gcc <= 9.2.0 with binutils 2.31 * removed trailing whitespace
2020-03-10fix static mumps build error - Added a space at the end of ar vr for the ↵Nisarg Patel1-1/+1
static build to run successfully (#15407)
2020-03-10libxpresent: Add some dependencies. (#15417)Toyohisa Kameyama0-0/+0
* libxpresent: Add some dependencies. * Change *proto dependency type from build to link.
2020-03-10libxpresent: Add some dependencies. (#15417)Toyohisa Kameyama1-4/+9
* libxpresent: Add some dependencies. * Change *proto dependency type from build to link.
2020-03-10r: Lower optimization level when using Fujitsu compiler@4.1.0. (#15418)Tomoki, Karatsu2-0/+73
2020-03-10cryptsetup: Add pkgconfig dependency (#15422)Dr. Christian Tacke1-0/+1
2020-03-10SCR: build with components (#14931)Elsa Gonsiorowski, PhD9-13/+92
* scr: add develop, legacy branches; version 2.0.0 squash! scr: add develop and legacy versions * filo: package for SCR component * spath: package for SCR component * axl: update for versions 0.3 and 0.2 * scr: build with components * spath: structure of +mpi if/else * :ok_hand: capitalization of ecp-veloc * scr: branches are always greater than any version
2020-03-10contrib-spiral: submit SPIRAL package recipe and HCOL package recipe … ↵broderickpt2-0/+90
(#15188) * contrib-spiral: submit SPIRAL package recipe and HCOL package recipe (extension package for SPIRAL) to spack * contrib-spiral: fix flake8 complaints for spiral & hcol * contrib-spiral: Revisions to package recipes to address comments * contrib-spiral: remove unecessary 'test' function * contrib-spiral: update hcol package to install in <prefix>/namespaces/packages/hcol * contrib-spiral: don't import os to hcol * contrib-spiral: tweak hcol package recipe
2020-03-10bugfix: fix install_missing_compilers option bug from v0.14.0 (#15416)Greg Becker1-0/+18
* bugfix: ensure bootstrapped compilers built before packages using the compiler
2020-03-10decompressor: add support for bz2 (#15424)Christoph Junghans1-0/+3
2020-03-10Parallel-netcdf: update package. (#15359)Sergey Kosukhin2-26/+127
* Parallel-netcdf: update package. * Add a temporary patch for version 'develop'. * Rename version 'develop' to 'master'. * Drop the patch for 'master'.
2020-03-10libfabric: added v1.9.1 (#15405)Seth R. Johnson1-2/+2
2020-03-10gromacs: remove simd variants (#13636)Christoph Junghans1-14/+34
2020-03-10likwid: added v5.0.1 (#15421)TZ1-0/+2
includes fixes for likwid-mpirun, better support for ARM and POWER, other bugfixes. For full support of ARM and POWER, #14183 has to be merged, too. Added TomTheBear as maintainer. He is the current main developer of LIKWID.
2020-03-10bazel: add missing dependency on zip (#15402)Melven Roehrig-Zoellner1-0/+1
2020-03-10update binutils to 2.34 (#15401)Mathias Anselmann1-0/+1
2020-03-10eagle: new package at v1.1.2 (#15409)Justin S1-0/+46
2020-03-10Ignore Eclipse files and folders (#15413)Tim Haines1-0/+5
2020-03-10openmpi: add version 4.0.3 (#15414)Howard Pritchard1-2/+3
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2020-03-09Revert to gzip as the default buildcache compression as bzip2 is not always ↵Patrick Gartung1-6/+6
available. (#15412) * Revert to gzip as the default buildcache compression as bzip2 is not always available. * Flake8
2020-03-09added cmake_args (#15411)ktsai71-1/+2
2020-03-09Gromacs: new version 2020.1 (#15399)TZ1-0/+1
2020-03-09exiv2: add zlib and expat dependency. (#15396)Toyohisa Kameyama1-0/+3
2020-03-09fast-global-file-status: add openssl dependency. (#15398)Toyohisa Kameyama1-0/+1
2020-03-09eigen variants have been removed (#15392)Stephen McDowell2-6/+2
* eigen variants have been removed ref: https://github.com/spack/spack/pull/15357 * opencv ^eigen is ('build', 'run') dependency
2020-03-07bugfix: installer.py shouldn't be executable (#15386)Todd Gamblin1-0/+0
This is a minor permission fix on the new installer.py introduced in #13100.
2020-03-07gnupg: add 2.2.19, add missing pinentry dep (#15390)Adam J. Stewart1-12/+23
2020-03-07libgcrypt: fix macOS tests (#15389)Adam J. Stewart1-7/+18
2020-03-07libgpg-error: add 1.37 (#15388)Adam J. Stewart1-6/+14
2020-03-07pinentry: add new package (#15387)Adam J. Stewart1-0/+47
2020-03-07new package: GunRock (#15383)Sinan1-0/+31
* new package: GunRock * Update var/spack/repos/builtin/packages/gunrock/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * improve Co-authored-by: Sinan81 <sbulut@3vgeomatics.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Sinan81 <Sinan81@github>
2020-03-07ArchSpec: fix semantics of satisfies when not concrete and strict is true ↵Massimiliano Culpo2-0/+17
(#15319)
2020-03-07Only use stable versions for public mirror (#15100)Peter Scheibel11-33/+93
* add --skip-unstable-versions option to 'spack mirror create' which skips sources/resource for packages if their version is not stable (i.e. if they are the head of a git branch rather than a fixed commit) * '--skip-unstable-versions' should skip all VCS sources/resources, not just those which are not cachable
2020-03-06sirius: add versions 6.4.4, 6.5.0 (#15374)Simon Pintarelli1-1/+3
- new versions 6.4.4, 6.5.0
2020-03-06Fix for being able to 'spack load' packages that have been renamed. (#14348)Andrew W Elble2-1/+36
* Fix for being able to 'spack load' packages that have been renamed. * tests: add test for 'spack load' of a installed, but renamed/deleted package
2020-03-06New package: bat (#15345)George Hartzell1-0/+29
* New package: bat Add package for bat: A cat(1) clone with wings. * Update copyright date * Embiggen comment re build env settings Provide a bit more explanatory text about why setup_build_environment needs to set LLVM_CONFIG_PATH and LIBCLANG_PATH. Co-authored-by: George Hartzell <ghartzell@audentestx.com>
2020-03-06flatbuffers: Allow building shared libraries (#15375)Dr. Christian Tacke1-0/+13
Added a shared variant, that switches between shared and static library building, like with most cmake packages.
2020-03-06Add extra version of py-widgetsnbextension (#15372)iarspider1-0/+1
2020-03-06New package: gengetopt, tool for C command line parsers. (#15367)Robert Blake1-0/+36
* New package: gengetopt, tool for C command line parsers. * Adding url for `spack version` and `spack checksum`
2020-03-06eigen: updated url to point to gitlab (#15357)Massimiliano Culpo2-60/+22
* eigen: updated url to point to gitlab fixes #13890 Eigen migrated from bitbucket to gitlab * eigen: simplified package (no dependencies other than stdlib) * Added TODO list for future improvements
2020-03-06libunwind: remove version 2018.10.12, add stable branch (#15316)Mark W. Krentel2-7/+20
* libunwind: remove version 2018.10.12, add stable branch Finish cleaning up the libunwind version numbers. The 2018.10.12 snapshot number didn't fit well with spack's ordering (my bad), and 1.4-rc1 is a near identical replacement. Add a version for the 1.4-stable branch. Add a variant for zlib compressed symbol tables (develop branch only). Adjust packages caliper and hpctoolkit to adapt to the changes. Add myself as maintainer. * Flake * Settle on renaming 'develop' to 'master' (to match the branch name) and name the 'v1.4-stable' branch as '1.4-head'. 'stable' or '1.4-stable' is a better name, but '1.4-head' (an infinity version) sorts better.
2020-03-06Cscope: fix linking and update to v15.9 (#15358)Mathias Anselmann1-2/+10
* explicitly link against libtinfo * Update to v15.9 * fixed indentation * fixed url definition * added url vor current version again * fixed indentation * moving url_version to the bottom
2020-03-06munge: new version, local state path, misc (#15307)Dr. Christian Tacke1-1/+15
* Add version 0.5.14 * Add variant to allow setting the localstatedir: See below * Add bzip2 dependency * Add myself to maintainers (I just think, I can care for this package) About localstatedir: munge has a server and a client. They communicate via unix domain sockets. This socket is in PREFIX/var. This package provides the client, the server, and development part (headers, libraries). Let's assume one has the server part installed as a system package. This generally is a good idea, so that the server gets started during boot. This means, that the socket is in the system's /var. If one now wants to use the client part (library!) via spack, one has a problem: spack's munge looks in SPACK-PACKAGE-PREFIX/var for the socket. There needs to be a way to let the spack installed package use the system's socket. So add a variant to override the path during build: localstatedir=/var.
2020-03-06Update pycairo to 1.18.1 and fix dependencies (#15352)iarspider1-3/+5
* Update pycairo to 1.18.1 and fix dependencies * Typo
2020-03-06openPMD-api: 0.11.0 (#15371)Axel Huebl1-0/+1
Add the latest release of openPMD-api.
2020-03-05Allow overrides for spack.config set() and override(). (#14432)Chris Green2-17/+141
Allows spack.config InternalConfigScope and Configuration.set() to handle keys with trailing ':' to indicate replacement vs merge behavior with respect to lower priority scopes. Lists may now be replaced rather than merged (this behavior was previously only available for dictionaries). This commit adds tests for the new behavior.
2020-03-05Recover coverage from subprocesses during unit tests (#15354)Tamara Dahlgren5-16/+16
* Recover coverage from subprocesses during unit tests
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