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2023-05-20Mochi-Margo: Add patch for pthreads detection (#36109)kwryankrattiger2-0/+567
2023-05-19libtiff: disable use of sphinx (#37803)Manuela Kuhn1-0/+2
2023-05-19py-anyio: add 3.6.2 (#37796)Manuela Kuhn1-1/+3
2023-05-19py-alabaster: add 0.7.13 (#37798)Manuela Kuhn1-0/+2
2023-05-19New patch release SLEPc 3.19.1 (#37675)Jose E. Roman2-0/+3
* New patch release SLEPc 3.19.1 * py-slepc4py: add explicit dependency on py-numpy
2023-05-19Automated deployment to update package flux-security 2023-05-16 (#37696)Vanessasaurus1-0/+1
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2023-05-19fix binutils dep of spack itself (#37738)Harmen Stoppels1-3/+2
2023-05-19aml: v0.2.1 (#37621)Swann Perarnau1-7/+11
* aml: v0.2.1 * add version 0.2.1 * fix hip variant bug * [fix] pkgconf required for all builds On top of needing pkgconf for autoreconf builds, the release configure scripts needs pkgconf do detect dependencies if any of the hwloc, ze, or opencl variants are active. * Remove deprecation for v0.2.0 based on PR advise.
2023-05-19intel-xed: add version 2023.04.16 (#37582)Mark W. Krentel2-12/+55
* intel-xed: add version 2023.04.16 1. add version 2023.04.16 2. adjust the mbuild resource to better match the xed version at the time 3. replace three conflicts() with one new requires() for x86_64 target 4. add patch for libxed-ild for some new avx512 instructions * [@spackbot] updating style on behalf of mwkrentel * Fix the build for 2023.04.16. XED requires its source directory to be exactly 'xed', so add a symlink. 5. move the mbuild resource up one level, xed wants it to be in the same directory as the xed source dir 6. deprecate 10.2019.03 * semantic style fix: add OSError to except * [@spackbot] updating style on behalf of mwkrentel --------- Co-authored-by: mwkrentel <mwkrentel@users.noreply.github.com>
2023-05-19spack env create: generate a view when newly created env has concrete specs ↵Harmen Stoppels2-1/+23
(#37799)
2023-05-19hipsycl: add v0.9.4 (#37247)Thomas-Ulrich1-0/+4
2023-05-19updates for the libpressio ecosystem (#37764)Robert Underwood10-0/+25
* updates for the libpressio ecosystem * [@spackbot] updating style on behalf of robertu94 * style fix: remove FIXME --------- Co-authored-by: Robert Underwood <runderwood@anl.gov> Co-authored-by: eugeneswalker <eugenesunsetwalker@gmail.com>
2023-05-19archspec: fix entry in the JSON file (#37793)Massimiliano Culpo2-2/+2
2023-05-19fortrilinos: convert to new stand-alone test process (#37783)Tamara Dahlgren1-18/+11
2023-05-19formetis: converted to new stand-alone test process (#37785)Tamara Dahlgren1-19/+12
2023-05-19lmod: allow core compiler to be specified with a version range (#37789)Massimiliano Culpo5-22/+48
Use CompilerSpec with satisfies instead of string equality tests Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2023-05-19compiler specs: do not print '@=' when clear from context (#37787)Greg Becker4-12/+22
Ensure that spack compiler add/find/list and lists of concrete specs print the compiler effectively as {compiler.name}{@compiler.version}. Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2023-05-19llvm: add version 16.0.3 (#37472)Satish Balay1-0/+1
2023-05-19add conduit 0.8.8 release (#37776)Cyrus Harrison1-0/+1
2023-05-18Add STRUMPACK versions 7.1.2 and 7.1.3 (#37779)Pieter Ghysels1-1/+3
2023-05-18legion +rocm: apply patch for --offload-arch (#37775)eugeneswalker2-0/+27
* legion +rocm: apply patch for --offload-arch * constrain to latest version
2023-05-18fzf: add v0.40.0 and refactor package (#37569)Alec Scott1-24/+17
* fzf: add v0.40.0 and refactor package * Remove unused imports
2023-05-18roctracer-dev-api: add v5.5.0 (#37484)Alec Scott1-0/+1
2023-05-18amqp-cpp: add v4.3.24 (#37504)Alec Scott1-0/+1
2023-05-18libjwt: add v1.15.3 (#37521)Alec Scott1-0/+1
2023-05-18rdkit: add v2023_03_1 (#37529)Alec Scott1-0/+1
2023-05-18py-jarvis-util: add a new package (#37729)H. Joe Lee1-0/+24
* py-jarvis-util: add a new package * Apply suggestions from code review Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-05-18Update py-nltk (#37703)Benjamin Meyers1-6/+171
* Update py-nltk * [@spackbot] updating style on behalf of meyersbs * Update var/spack/repos/builtin/packages/py-nltk/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-05-18update package nccl version 2.17, 2.18 (#37721)Aditya Bhamidipati1-0/+2
2023-05-18New package py-tensorly (#37705)Benjamin Meyers1-0/+25
2023-05-18New package py-scikit-tensor-py3 (#37706)Benjamin Meyers1-0/+22
2023-05-18Update py-jedi 0.17.2 checksum in package.py (#37700)vucoda1-1/+1
Pypi for jedi-0.17.2.tar.gz does not match the package.py file. https://pypi.org/project/jedi/0.17.2/#copy-hash-modal-60e943e3-1192-4b12-90e2-4d639cb5b4f7
2023-05-18Remove references to gmake executable, only use make (#37280)Dom Heinzeller5-8/+3
2023-05-18dlb: add v3.3.1 (#37759)Victor Lopez Herrero1-0/+1
2023-05-18harfbuzz: add 7.3.0 (#37753)Michael Kuhn1-5/+2
Do not prefer 5.3.1 anymore since it does not build with newer compilers. Linux distributions have also moved to 6.x and newer.
2023-05-18[babelstream] FIX: maintainers list missing a comma (#37761)kaanolgu1-1/+2
2023-05-18update R: add version 4.3.0 (#37090)Glenn Johnson1-0/+2
2023-05-18Cran updates (#37296)Glenn Johnson321-174/+965
* add version 1.28.3 to r-hexbin * add version 5.0-1 to r-hmisc * add version 0.5.5 to r-htmltools * add version 1.6.2 to r-htmlwidgets * add version 1.4.2 to r-igraph * add version 0.42.19 to r-imager * add version 1.0-5 to r-inum * add version 0.9-14 to r-ipred * add version 1.3.2 to r-irkernel * add version 2.2.0 to r-janitor * add version 0.1-10 to r-jpeg * add version 1.2.2 to r-jsonify * add version 0.9-32 to r-kernlab * add version 1.7-2 to r-klar * add version 1.42 to r-knitr * add version 1.14.0 to r-ks * add version 2.11.0 to r-labelled * add version 1.7.2.1 to r-lava * add version 0.6-15 to r-lavaan * add version 2.1.2 to r-leaflet * add version 2.9-0 to r-lfe * add version 1.1.6 to r-lhs * add version 1.1-33 to r-lme4 * add version 1.5-9.7 to r-locfit * add version 0.4.3 to r-log4r * add version 5.6.18 to r-lpsolve * add version 0.2-11 to r-lwgeom * add version 2.7.4 to r-magick * add version 1.22.1 to r-maldiquant * add version 1.2.11 to r-mapproj * add version 1.6 to r-markdown * add version 7.3-59 to r-mass * add version 1.5-4 to r-matrix * add version 0.63.0 to r-matrixstats * add version 4.2-3 to r-memuse * add version 4.0-0 to r-metafor * add version 1.8-42 to r-mgcv * add version 3.15.0 to r-mice * add version 0.4-5 to r-mitml * add version 2.0.0 to r-mixtools * add version 0.1.11 to r-modelr * add version 1.4-23 to r-multcomp * add version 0.1-9 to r-multcompview * add version 0.1-13 to r-mutoss * add version 1.18.1 to r-network * add version 3.3.4 to r-nleqslv * add version 3.1-162 to r-nlme * add version 0.26 to r-nmf * add version 0.60-17 to r-np * add version 4.2.5.2 to r-openxlsx * add version 2022.11-16 to r-ordinal * add version 0.6.0.8 to r-osqp * add version 0.9.1 to r-packrat * add version 1.35.0 to r-parallelly * add version 1.3-13 to r-party * add version 1.2-20 to r-partykit * add version 1.7-0 to r-pbapply * add version 0.3-9 to r-pbdzmq * add version 1.2 to r-pegas * add version 1.5-1 to r-phytools * add version 1.9.0 to r-pillar * add version 1.4.0 to r-pkgbuild * add version 2.1.0 to r-pkgcache * add version 0.5.0 to r-pkgdepends * add version 2.0.7 to r-pkgdown * add version 1.3.2 to r-pkgload * add version 0.1-8 to r-png * add version 1.1.22 to r-polspline * add version 1.0.1 to r-pool * add version 1.4.1 to r-posterior * add version 3.8.1 to r-processx * add version 2023.03.31 to r-prodlim * add version 1.0-12 to r-proj4 * add version 2.5.0 to r-projpred * add version 0.1.6 to r-pryr * add version 1.7.5 to r-ps * add version 1.0.1 to r-purrr * add version 1.3.2 to r-qqconf * add version 0.25.5 to r-qs * add version 1.60 to r-qtl * add version 0.4.22 to r-quantmod * add version 5.95 to r-quantreg * add version 0.7.8 to r-questionr * add version 1.2.5 to r-ragg * add version 0.15.1 to r-ranger * add version 3.6-20 to r-raster * add version 2.2.13 to r-rbibutils * add version 1.0.10 to r-rcpp * add version 0.12.2.0.0 to r-rcpparmadillo * add version 0.1.7 to r-rcppde * add version 0.3.13 to r-rcppgsl * add version 1.98-1.12 to r-rcurl * add version 1.2-1 to r-rda * add version 2.1.4 to r-readr * add version 1.4.2 to r-readxl * add version 1.0.6 to r-recipes * add version 1.1.6 to r-repr * add version 1.2.16 to r-reproducible * add version 0.3.0 to r-require * add version 1.28 to r-reticulate * add version 2.0.7 to r-rfast * add version 1.6-6 to r-rgdal * add version 0.6-2 to r-rgeos * add version 1.1.3 to r-rgl * add version 0.2.18 to r-rinside * add version 4-14 to r-rjags * add version 1.3-1.8 to r-rjsonio * add version 2.21 to r-rmarkdown * add version 0.9-2 to r-rmpfr * add version 0.7-1 to r-rmpi * add version 6.6-0 to r-rms * add version 0.10.25 to r-rmysql * add version 0.8.7 to r-rncl * add version 2.4.11 to r-rnexml * add version 0.95-1 to r-robustbase * add version 1.3-20 to r-rodbc * add version 7.2.3 to r-roxygen2 * add version 1.4.5 to r-rpostgres * add version 0.7-5 to r-rpostgresql * add version 0.8.29 to r-rsconnect * add version 0.4-15 to r-rsnns * add version 2.3.1 to r-rsqlite * add version 0.7.2 to r-rstatix * add version 1.1.2 to r-s2 * add version 0.4.5 to r-sass * add version 0.1.9 to r-scatterpie * add version 0.3-43 to r-scatterplot3d * add version 3.2.4 to r-scs * add version 1.6-4 to r-segmented * add version 4.2-30 to r-seqinr * add version 0.26 to r-servr * add version 4.3.0 to r-seurat * add version 1.0-12 to r-sf * add version 0.4.2 to r-sfheaders * add version 1.1-15 to r-sfsmisc * add version 1.7.4 to r-shiny * add version 1.9.0 to r-signac * add version 1.6.0.3 to r-smoof * add version 0.1.7-1 to r-sourcetools * add version 1.6-0 to r-sp * add version 1.3-0 to r-spacetime * add version 7.3-16 to r-spatial * add version 2.0-0 to r-spatialeco * add version 1.2-8 to r-spatialreg * add version 3.0-5 to r-spatstat * add version 3.0-1 to r-spatstat-data * add version 3.1-0 to r-spatstat-explore * add version 3.1-0 to r-spatstat-geom * add version 3.1-0 to r-spatstat-linnet * add version 3.1-4 to r-spatstat-random * add version 3.0-1 to r-spatstat-sparse * add version 3.0-2 to r-spatstat-utils * add version 2.2.2 to r-spdata * add version 1.2-8 to r-spdep * add version 0.6-1 to r-stars * add version 1.5.0 to r-statmod * add version 4.8.0 to r-statnet-common * add version 1.7.12 to r-stringi * add version 1.5.0 to r-stringr * add version 1.9.1 to r-styler * add version 3.5-5 to r-survival * add version 1.5-4 to r-tclust * add version 1.7-29 to r-terra * add version 3.1.7 to r-testthat * add version 1.1-2 to r-th-data * add version 1.2 to r-tictoc * add version 1.3.2 to r-tidycensus * add version 1.2.3 to r-tidygraph * add version 1.3.0 to r-tidyr * add version 2.0.0 to r-tidyverse * add version 0.2.0 to r-timechange * add version 0.45 to r-tinytex * add version 0.4.1 to r-triebeard * add version 1.0-9 to r-truncnorm * add version 0.10-53 to r-tseries * add version 0.8-1 to r-units * add version 4.3.0 to r-v8 * add version 1.4-11 to r-vcd * add version 1.14.0 to r-vcfr * add version 0.6.2 to r-vctrs * add version 1.1-8 to r-vgam * add version 0.4.0 to r-vioplot * add version 1.6.1 to r-vroom * add version 1.72-1 to r-wgcna * add version 0.4.1 to r-whisker * add version 0.7.2 to r-wk * add version 0.39 to r-xfun * add version 1.7.5.1 to r-xgboost * add version 1.0.7 to r-xlconnect * add version 3.99-0.14 to r-xml * add version 0.13.1 to r-xts * add version 2.3.7 to r-yaml * add version 2.3.0 to r-zip * add version 1.8-12 to r-zoo * r-bigmem: dependency on uuid * r-bio3d: dependency on zlib * r-devtools: dependency cleanup * r-dose: dependency cleanup * r-dss: dependency cleanup * r-enrichplot: dependency cleanup * r-fgsea: dependency cleanup * r-geor: dependency cleanup * r-ggridges: dependency cleanup * r-lobstr: dependency cleanup * r-lubridate: dependency cleanup * r-mnormt: dependency cleanup * r-sctransform: version format correction * r-seuratobject: dependency cleanup * r-tidyselect: dependency cleanup * r-tweenr: dependency cleanup * r-uwot: dependency cleanup * new package: r-clock * new package: r-conflicted * new package: r-diagram * new package: r-doby * new package: r-httr2 * new package: r-kableextra * new package: r-mclogit * new package: r-memisc * new package: r-spatstat-model * r-rmysql: use mariadb-client * r-snpstats: add zlib dependency * r-qs: add zstd dependency * r-rcppcnpy: add zlib dependency * black reformatting * Revert "r-dose: dependency cleanup" This reverts commit 4c8ae8f5615ee124fff01ce43eddd3bb5d06b9bc. * Revert "r-dss: dependency cleanup" This reverts commit a6c5c15c617a9a688fdcfe2b70c501c3520d4706. * Revert "r-enrichplot: dependency cleanup" This reverts commit 65e116c18a94d885bc1a0ae667c1ef07d1fe5231. * Revert "r-fgsea: dependency cleanup" This reverts commit ffe2cdcd1f73f69d66167b941970ede0281b56d7. * r-rda: this package is back in CRAN * r-sctransform: fix copyright * r-seurat: fix copyright * r-seuratobject: fix copyright * Revert "add version 6.0-94 to r-caret" This reverts commit 236260597de97a800bfc699aec1cd1d0e3d1ac60. * add version 6.0-94 to r-caret * Revert "add version 1.8.5 to r-emmeans" This reverts commit 64a129beb0bd88d5c88fab564cade16c03b956ec. * add version 1.8.5 to r-emmeans * Revert "add version 5.0-1 to r-hmisc" This reverts commit 517643f4fd8793747365dfcfc264b894d2f783bd. * add version 5.0-1 to r-hmisc * Revert "add version 1.42 to r-knitr" This reverts commit 2a0d9a4c1f0ba173f7423fed59ba725bac902c37. * add version 1.42 to r-knitr * Revert "add version 1.6 to r-markdown" This reverts commit 4b5565844b5704559b819d2e775fe8dec625af99. * add version 1.6 to r-markdown * Revert "add version 0.26 to r-nmf" This reverts commit 4c44a788b17848f2cda67b32312a342c0261caec. * add version 0.26 to r-nmf * Revert "add version 2.3.1 to r-rsqlite" This reverts commit 5722ee2297276e4db8beee461d39014b0b17e420. * add version 2.3.1 to r-rsqlite * Revert "add version 1.0-12 to r-sf" This reverts commit ee1734fd62cc02ca7a9359a87ed734f190575f69. * add version 1.0-12 to r-sf * fix syntax error
2023-05-18unifyfs: new v1.1 release (#37756)Cameron Stanavige1-3/+7
Add v1.1 release Update mochi-margo dependency compatible versions Update version range of libfabric conflict
2023-05-18[xrootd] New variants, new version, improve build config (#37682)Chris Green3-20/+128
* Add FNAL Spack team to maintainers * New variants and configuration improvements * Version dependent "no-systemd" patches. * New variants `client_only`, and `davix` * Better handling of `cxxstd` for different versions, including improved patching and CMake options. * Version-specific CMake requirements. * Better version-specific handling of `openssl` dependency. * `py-setuptools` required for `+python` build. * Specific enable/disable of CMake options and use of `-DFORCE_ENABLED=TRUE` to prevent unwanted/non-portable activation of features. * Better handling of `+python` configuration. * New version 5.5.5
2023-05-18Bump Spack version on develop to 0.21.0.dev0 (#37760)Massimiliano Culpo1-1/+1
2023-05-18Bugfix: allow preferred new versions from externals (#37747)Peter Scheibel2-92/+126
2023-05-17maintainers: switch from list to directive (#37752)Tamara Dahlgren30-1221/+1310
2023-05-17Add aws-plcuster[-aarch64] stacks (#37627)Stephen Sachs9-0/+394
Add aws-plcuster[-aarch64] stacks. These stacks build packages defined in https://github.com/spack/spack-configs/tree/main/AWS/parallelcluster They use a custom container from https://github.com/spack/gitlab-runners which includes necessary ParallelCluster software to link and build as well as an upstream spack installation with current GCC and dependencies. Intel and ARM software is installed and used during the build stage but removed from the buildcache before the signing stage. Files `configs/linux/{arch}/ci.yaml` select the necessary providers in order to build for specific architectures (icelake, skylake, neoverse_{n,v}1).
2023-05-17Added version 1.3.1 (#37735)Brian Van Essen1-0/+1
2023-05-17lmod: fix build, bump patch version (#37744)Harmen Stoppels1-0/+3
2023-05-17Limit deepcopy to just the initial "all" section (#37718)Massimiliano Culpo1-12/+7
Modifications: - [x] Limit the scope of the deepcopy when initializing module file writers
2023-05-17gitlab ci: no copy-only pipelines w/ deprecated config (#37720)Scott Wittenburg1-6/+22
Make it clear that copy-only pipelines are not supported while still using the deprecated ci config format. Also ensure that the deprecated stack does not fail on spack pipelines for tags.
2023-05-17whizard: build newer versions in parallel (#37422)Juan Miguel Carceller1-9/+6
2023-05-17libxcb: depend on python, remove releases that need python 2 (#37698)Harmen Stoppels1-10/+3
generated by cgit v1.2.3-60-g2f50 (git 2.42.0) at 2024-07-08 15:44:04 +0000