Age | Commit message (Collapse) | Author | Files | Lines |
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The previous fix from #17149 contained a thinko that produced errors for
packages that overwrite configure_directory.
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* Activate environment in container file
This PR will ensure that the container recipes will build the spack
environment by first activating the environment.
* Deactivate environment before environment collection
For Singularity, the environment must be deactivated before running the
command to collect the environment variables. This is because the
environment collection uses `spack env activate`.
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* Don't detect "classic" on Cray to avoid a compiler bug
* add tests
Co-authored-by: Gregory Becker <becker33@llnl.gov>
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* share/spack/setup-env.fish file to setup environment in fish shell
* setup-env.fish testing script
* Update share/spack/setup-env.fish
Co-Authored-By: Elsa Gonsiorowski, PhD <gonsie@me.com>
* Update share/spack/qa/setup-env-test.fish
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
* updates completions using `spack commands --update-completion`
* added stderr-nocaret warning
* added fish shell tests to CI system
Co-authored-by: becker33 <becker33@llnl.gov>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Elsa Gonsiorowski, PhD <gonsie@me.com>
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* check link dirs for existence
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Small fix so that immintrin.h gets included properly when the
compiler sets __F16C__. Upstream has been notified.
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https://github.com/STEllAR-GROUP/hpx/issues/4728#issuecomment-640685308
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Co-authored-by: Mark Olesen <Mark.Olesen@esi-group.com>
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Added master branch, too
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* [whizard] fix runtime compilers
fix
* [whizard] flake8
* [whizard] add master branch
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* [py-mdanalysis] new version and added dependencies
Original commit message:
Author: Andrew Elble <aweits@rit.edu>
Date: Thu Nov 14 08:35:14 2019 -0500
mdanalysis
* [py-mdanalysis] python is type build/run
* [py-mdanalysis] updated numpy version requirement for all listed versions of py-mdanalysis
* [py-mdanalysis] updated biopython version requirement for all listed versions of py-mdanalysis
* [py-mdanalysis] updated py-griddataformats version requirement for all listed versions of py-mdanalysis
* [py-mdanalysis] gsd only required after version 1.17.0 and requires gsd@1.4.0
* [py-mdanalysis] only requires mmtf-python after version 0.16.0 and requires version 1.0.0
* [py-mdanalysis] has required py-joblib since version 0.16
* [py-mdanalysis] updated py-scipy version requirement for all listed versions of py-mdanalysis
* [py-mdanalysis] updated py-matplotlib version requirement for all listed versions of py-mdanalysis
* [py-mdanalysis] has required py-mock since version 0.18.0
* [py-mdanalysis] py-scikit-learn only required after version 0.16.0 and only for +analysis variant
* [py-mdanalysis] Reordered and reformatted for readability
* [py-mdanalysis] flake8 fixes
* [py-mdanalysis] proactively adding version 1.0.0 while I'm here since major release
* [py-mdanalysis] fixing some forgotten colons
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* [py-crossmap] added version 0.3.9
* [py-crossmap] py-numpy not required
* [py-crossmap] py-cython must be >= 0.17
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(#17141)
* [ruby] fixing path to gcc such that users can use gem to install native gems to their home directory
* [ruby] working on making flake8 happier
* [ruby] Line can't really be split cleanly. Enhancing flake8's calm.
ya learn something new every day...
* [ruby] line break where requested
* [ruby] make raw string
* [ruby] only running for x86_64-linux everything else is untested
* [ruby] finding rbconfig.rb in a cross platform manner
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* new package: GraphBlast
* polish
* add cuda_arch setup
* flake8
* the package requires cuda variant and dependency
* add comments
* define cuda_arch
* implement multiple and custom cuda arches
* tidy up, improve
* flake8
* improve style
* add variant description
* use patch method, add new version for latest commit building since master now fails
* remove gcc conflict, tidy up
* also indicate build range for boost
Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
Co-authored-by: Sinan81 <Sinan81@github>
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Renamed xspp to hspp
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Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Sinan81 <Sinan81@github>
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py-mpi4py installs its header files at a difficult-to-predict location:
$prefix/lib/python-x.y/site-packages/mpi4py/include
With the new `headers` properties, dependent packages have now an easy
way to obtain this location:
spec['py-mpi4py'].headers.directories[0]
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* [WIP] Add hepmcanalysis package
* Implement install() for hepmcanalysis
* Flake-8
Co-authored-by: iarspider <iarpsider@gmail.com>
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added support for Fujitsu compiler.
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* cp2k: variant tuning `lmax` was broken
- `spack install cp2k lmax=6` now works
* Update var/spack/repos/builtin/packages/cp2k/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/cp2k/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/cp2k/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/cp2k/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/cp2k/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/cp2k/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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* New package: coin3d
* Update package.py
* Flake-8
* Update var/spack/repos/builtin/packages/coin3d/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Add link-time dependencies
* Add configure flags for boost; remove version 4.0.0 (doesn't compile)
Co-authored-by: iarspider <iarpsider@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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* fix bug with verifying cray compilers
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* remove three commands that have been deprecated since v0.13.0
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The config.guess detection used a relative path that did not work in
combination with `check_call`. Use an absolute path instead.
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* cray: detect frontend compilers automatically
This commit permits to detect frontend compilers
automatically, with the exception of cce.
Co-authored-by: Gregory Becker <becker33.llnl.gov>
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use pkgconfig to detect libtirpc
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* New package: fjcontrib + new variants for fastjet
* Flake-8
* Flake-8 once more
* Update package.py
* Allow choosing which plugins to build
Build all plugins by default.
* Flake-8
* Always build all plugins
* Update package.py
Co-authored-by: iarspider <iarpsider@gmail.com>
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[george.hartzell@172-16-193-97 spack-explore-docker]$ spack containerize
Running `spack containerize` with the example `spack.yaml` file fails
with an error that ends like so:
```
[...]
File "/local_scratch/hartzell/tmp/spack-explore-docker/lib/spack/external/ruamel/yaml/scanner.py", line 165, in need_more_tokens
self.stale_possible_simple_keys()
File "/local_scratch/hartzell/tmp/spack-explore-docker/lib/spack/external/ruamel/yaml/scanner.py", line 309, in stale_possible_simple_keys
"could not find expected ':'", self.get_mark())
ruamel.yaml.scanner.ScannerError: while scanning a simple key
in "/local_scratch/hartzell/tmp/spack-explore-docker/spack.yaml", line 26, column 1
could not find expected ':'
in "/local_scratch/hartzell/tmp/spack-explore-docker/spack.yaml", line 28, column 5
```
Indenting the block string fixes the problem for me.
CentOS 7,
```
$ spack --version
0.14.2-1529-ec58f28c2
```
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The Geant4 cmake check requires Qt5OpenGL_FOUND, so we must require
the Qt5 +opengl variant. If not, the cmake phase fall through to Qt4
and fails due to a missing Qt4::QtGui target.
In Geant4InterfaceOptions.cmake:
```
if(Qt5Core_FOUND
AND Qt5Gui_FOUND
AND Qt5Widgets_FOUND
AND Qt5OpenGL_FOUND
AND Qt5PrintSupport_FOUND)
```
Ref: https://github.com/Geant4/geant4/blob/master/cmake/Modules/Geant4InterfaceOptions.cmake#L90
(5baee230e93612916bcea11ebf822756cfa7282c, Import Geant4 10.6.0 source tree)
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Fixes #17187
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Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
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"""The Virtual Monte Carlo (VMC) library"""
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* redis: add config file from source code
* Update var/spack/repos/builtin/packages/redis/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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* WarpX: Development Branch
Update the name of our development branch.
* WarpX version: develop keyword
development is not a "newest"-like keyword, but `master`/`develop`/`dev` are.
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Renamed: develop version
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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This is a general CMake CUDA language hint to use the CXX
compiler has host compiler for NVCC. Seems like a good
default since we do not express the CUDA compiler in Spack
otherwise yet (e.g. no `self.compiler.cuda` or
`self.compiler.cudahostcxx`).
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* Add support for macOS Big Sur
* Big Sur is actually macOS 11.0
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