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2017-07-15Add package for Somatic Sniper (#4778)George Hartzell1-0/+36
Lightly tested on CentOS 7.
2017-07-14New Package: miniFE (#4712)homerdin1-0/+80
* New Package: miniFE * Removed extra property, using variant value directly
2017-07-14Savanna (#4713)Kshitij Mehta1-0/+50
* savanna: Runtime framework for online workflow management from the ECP CODAR project * savanna: added version 0.5 * savanna: Copying the package contents to prefix as part of installation * savanna: Doing submodules=true for git checkout of develop version * savanna: removed dependency on adios@develop. depends on adios * Savanna: Converted package to MakefilePackage
2017-07-14New Package: Pathfinder (#4714)homerdin1-0/+55
* New Package: Pathfinder * Added index for String format * Changed to make Makefile edit more specific * Make Flake8 Happy * Removed unneeded conversion
2017-07-14Add package for freebayes (#4718)George Hartzell1-0/+51
* Add package for freebayes * Don't include url, must use git info. * Fix flake8 complaints
2017-07-14Add package for Sniffles (#4719)George Hartzell1-0/+42
* Add package for Sniffles * Wire up a manual install step The cmake infra doesn't install anything, so do it by hand. The binaries land in a location that embeds the version...
2017-07-14hybpiper: new package (#4720)Audrey Thoma2-0/+104
* hybpiper: new package and spades dependency * hybpiper: making flkae8 happy * hybpiper: fixing dependency errors * fixing python dep type * removing cmake from spade dependencies
2017-07-14Package/cloverleaf (#4759)homerdin1-0/+108
* New Package: CloverLeaf * Removed Tag and Added Documentation * Corrected Dependencies and Variant Values
2017-07-14New Package: Nekbone. (#4748)pkondamudi1-0/+52
2017-07-14New Package: EBMS (#4749)pkondamudi1-0/+46
2017-07-14libwebsockets: new versions (#4764)Axel Huebl2-1/+3
* libwebsockets: new versions both new versions fix a nasty bug leading to a hanging connection on connect. * ISAAC Server: Fix libwebsockets ISAAC server did hang in docker containers due to a bug in libwebsockets.
2017-07-14slepc: fix download url (#4763)Denis Davydov1-1/+1
2017-07-13New Package:XSBench (#4751)pkondamudi1-0/+59
* New Package:XSBench * minor changes * replaced extend() with append() * addressed comment. * removed tags as per PR# 4749
2017-07-13Add two python packages for editing mach-O headers. (#4725)Patrick Gartung2-0/+73
* Add two python packages for editing mach-O headers. Much faster than calling otool and install_name_tool directly * remove non-overriding function * autopep8
2017-07-13py-deeptools: new package and dependencies (#4717)Audrey Thoma5-0/+159
* py-deeptools: new package and dependencies * py-deeptools: fixing python things * missed a fix
2017-07-13jags: Adding atlas as it depends on atlasAlen Kansakar1-1/+1
2017-07-13New Package: CloverLeaf3D (#4705)homerdin1-0/+93
* New Package: CloverLeaf3D * Fixed Flake8 Mistake * Removed unnecessary check
2017-07-13graphmap: new package (#4707)Audrey Thoma1-0/+43
2017-07-13Adding OpenMP variant to Trilinos. Also building NetCDF with PNetCDF ↵Jon Rood1-19/+25
directly, for Trilinos. (#4687) * Adding OpenMP variant to Trilinos. Also building NetCDF with PNetCDF in Trilinos when necessary. * Adding runtime error for PNetCDF variant in Trilinos when necessary. Omitting unnecessary openmp variant for Trilinos in Nalu. * Changing variant checks to conflicts statements. * Adding comments to Trilinos package.
2017-07-13idba: new package (#4722)Audrey Thoma1-0/+48
2017-07-13infernal: new package (#4724)Audrey Thoma1-0/+49
2017-07-13last: new package (#4729)Audrey Thoma1-0/+39
2017-07-13maverick: new package (#4731)Audrey Thoma1-0/+48
2017-07-13Add package for daligner (#4734)George Hartzell1-0/+51
2017-07-13mcl: new package (#4732)Audrey Thoma1-0/+36
2017-07-13dealii: workaround for concretization bug (#4735)Denis Davydov2-2/+6
* dealii: workaround for concretization bug * trilinos: add Anasazi which got disabled recently
2017-07-13mitofates: new package and dependency libsvm (#4741)Audrey Thoma2-0/+84
2017-07-13 Added ASPA Proxy App (#4743)Akhil Reddy Patlolla1-0/+72
2017-07-12Jags: Changing depends on to only include lapackAlen Kansakar1-1/+1
2017-07-12Jags: Fixing problems found by flack8Alen Kansakar1-2/+4
2017-07-12Jags: Adding jags definationkansakar1-0/+42
2017-07-12hpx: added new package (#4709)Christoph Junghans1-0/+49
2017-07-12Typo: submdoules -> submodules (#4716)George Hartzell1-1/+1
2017-07-11genometools: new package (#4706)Audrey Thoma1-0/+45
* genometools: new package * genometools: fixing perl dependency type
2017-07-10fseq: new package (#4702)Audrey Thoma1-0/+41
* fseq: new package * fseq: fixed dependency type
2017-07-10New Package: MiniAMR (#4701)homerdin1-0/+70
* New Package: MiniAMR * Removed empty braces string formatting
2017-07-10New Package: HPCCG (#4693)homerdin1-0/+77
* New Package: HPCCG * Moved Run Script Install Location
2017-07-10New Package: MiniAero (#4694)homerdin1-0/+62
2017-07-10exabayes: new pacakge (#4695)Audrey Thoma1-0/+57
* exabayes: new pacakge * exabayes: added configure arg * exabayes: adding comments regarding compilers
2017-07-10csdp: new pacakge (#4700)Audrey Thoma1-0/+43
2017-07-10ea-utils: new package (#4690)Audrey Thoma1-0/+51
* ea-utils: new package * ea-utils: simplifying self.spec.prefix * ea-utils: added comment about perl * ea-utils: fixing flake8 error
2017-07-09New package: CoMD (#4697)EmreAtes1-0/+56
* New package: comd * Avoid re-defining build
2017-07-07GCC: Add strip variant to reduce installation size (#4670)Mike DePaulo1-0/+9
* gcc: Add strip variant * gcc: Fix strip variant description being too long
2017-07-07Add a package for tophat (#4698)George Hartzell1-0/+47
Lightly tested on CentOS 7.
2017-07-07fastx-toolkit: solving gcc conflict (#4696)Audrey Thoma1-0/+2
2017-07-07New package: quinoa (#4686)Christoph Junghans1-0/+65
2017-07-07Added TeaLeaf Package (#4683)homerdin1-0/+77
2017-07-07Isaac Server 1.3.1: New version (#4689)Axel Huebl1-0/+1
adds a new release of isaac-server.
2017-07-07emboss: new package (#4691)Audrey Thoma1-0/+40
2017-07-07New Packages: gearshifft, clFFT (#4560)Axel Huebl2-0/+129
Adds the `gearshifft` package, a benchmark suite for heterogeneous implementations of FFTs. Adds clFFT, a software library containing FFT functions written in OpenCL. see: https://github.com/clMathLibraries/clFFT
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