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2019-11-27Add version 2.1.0 to 'aspect' package (#13830)Rene Gassmoeller1-3/+4
2019-11-27Update cartopy version and fix recipe (#13898)iarspider1-7/+19
* Update cartopy version and fix recipe Cartopy 0.17.0 works fine with proj 6 * Update cartopy version and fix recipe Cartopy 0.17.0 works fine with proj 6 * Set ACCEPT_USE_OF_DEPRECATED_PROJ_API_H flag when building extension * Add variants to py-cartopy recipe as suggested * Fix proj dependency * Split dependency * Fix PEP-8; remove extra dependency
2019-11-27QMCPACK Update Nov2019 (#13832)Nichols A. Romero1-31/+34
* Bump up QE version number to 6.4.1. * Fix QMCPACK conflicts. * HDF5 dependencies where over specified which could cause unnecessary installs of HDF5. * Update QMCPACK testing option. * Remove support for serial QE 6.4.1 converter. Add support for parallel QE 6.4.1. converter with serial HDF5. * Switch to setup_run_environment. * Fix setup_run_environment call arguements. * Fix typo. * switch run_env to env
2019-11-27mpich: Add ucx dependency (#13921)Ken Raffenetti1-2/+7
2019-11-27cuda: add polymorphic package versions (#13912)Federico Ficarelli1-24/+41
2019-11-27scm-git-archive python package (#13915)Marc Mengel1-0/+24
* scm-git-archive python package * flake8 * per comments
2019-11-27New package: py-cheroot (#13583)Marc Mengel1-0/+25
* package py-cheroot * package py-cheroot * autopep8, docutils cleanup * Update var/spack/repos/builtin/packages/py-cheroot/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * missing deps * flake8 * license bits * Update var/spack/repos/builtin/packages/py-cheroot/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-cheroot/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-cheroot/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-cheroot/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * python dep * flake8
2019-11-27openmpi: add 3.1.5 and 3.0.5 (#13918)Howard Pritchard1-0/+2
Note to spack people: these are expected to be end of line releases for both the 3.1.5 an 3.0.5 releases Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2019-11-27json-fortran: get unit tests working (#13919)Adam J. Stewart1-0/+8
2019-11-27Fix py-pyarrow recipe (#13914)iarspider1-1/+1
Fix name of one dependency
2019-11-27accfft: fix narrowing error. (#13909)t-karatsu2-0/+14
2019-11-27Bump intel compiler suite to 2019u5. (#13835)健美猞猁4-0/+7
* Bump intel compiler suite to 2019u5. * Remove a duplicate line.
2019-11-27Fix py-line-profiler incompatible decorators (#13911)Oliver Breitwieser1-1/+4
`@run_after` and `@when` are incompatible, issue #12736.
2019-11-27ACTS: added version v0.11.1 (#13910)Hadrien G1-0/+1
2019-11-26Add version check when building intel-tbb with clang (#13893)Tim Haines1-0/+10
* Add version check when building with clang * Update for flake8 formatting
2019-11-26votca: help concretizer (#13906)Christoph Junghans3-6/+5
* votca: help concretizer * flake8
2019-11-26add new package : sysstat (#13907)darmac1-0/+21
2019-11-26use semicolons instead of newlines in module/python command (#13904)Greg Becker1-1/+1
2019-11-26IntelPackage: setup_env -> setup_build_env (#13888)Adam J. Stewart3-49/+26
2019-11-26buildcache list: do not display duplicate specs (#13758)Massimiliano Culpo2-6/+25
fixes #13757
2019-11-26metabat: add versions 2.14 and 2.13 (#13369)Eric Martin1-2/+4
* metabat: add versions 2.14 and 2.13 * update build environment * Update var/spack/repos/builtin/packages/metabat/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/metabat/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-11-26MPark.Variant: Patch NVCC C++14 Build (#13901)Axel Huebl2-0/+30
Fix an issue with NVCC when building with C++14.
2019-11-26update py-nbconvert (#13422)Andreas Baumbach1-5/+20
* update py-nbconvert * add setuptools dependency, like all the other jupyter packages it seems to be using setuptools for some commands all the time but requires it for the newest version * added dependencies, not necessarily only needed for the latest one * depends on new packages (defusedxml, pandocfilters, testpath) * should also be moved to pypi sources? * '@5:@5:' is a valid spec -> intended? * make dependencies optional * Update dependencies and add description * relax py-mistune dependency restriction * Update var/spack/repos/builtin/packages/py-nbconvert/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-11-26new package: py-arrow (#13575)Andreas Baumbach1-0/+28
* new package: py-arrow * actually use dependencies from 0.14.7 not from current HEAD * drop dependencies that dont appear in the source * readd sphinx as doc dependency * update dependencies * drop doc-only dependencies
2019-11-26Update Mathematica recipe (#13679)Roman Briskine1-1/+15
* Add licensing; replace url with url_for_version; create .spack dir during installation; symlink wolframscript; generate spec.yaml if missing * Reverted url change, .spack directory creation, and spec.yaml generation * Fix formatting issues
2019-11-26ocaml: fix url (#13749)noguchi-k1-1/+1
2019-11-26Days since OpenMPI+UCX trashed my cluster: 0 (#13818)sknigh2-0/+255
2019-11-26silence vtkm logging until it does not report false positives to std::cerr ↵Matt Larsen1-1/+1
(#13845)
2019-11-26add new package : busybox@1.31.1 (#13871)darmac1-0/+28
* add new package : busybox@1.31.1 * 1. add some other version for busybox 2. change Busybox class to MakefilePackage 3. move make('defconfig') and make() to build() function 4. change install_tree('', prefix) to install_tree('.', prefix)
2019-11-26add new package : blktrace (#13872)darmac1-0/+31
* add new package : blktrace * modify install_tree('', prefix) to install_tree('.', prefix)
2019-11-26lsof: fix url and checksum (#13801)noguchi-k1-2/+5
* lsof: fix url and checksum * lsof: change the download url, add list url and version 4.91, 4.90
2019-11-26Remove warning from the "Custom Extensions" section of the docs (#13804)Massimiliano Culpo1-6/+0
Extensions have been available for a while and the overall design seems solid enough to be feasible for extensions without losing backward compatibility.
2019-11-26Package Index: Build in Dockerhub (#13810)Axel Huebl9-87/+75
* Package Index: Build in Dockerhub Prepare to build the package index service, packages.spack.io, on Dockerhub. Local build (in spack root dir): ``` docker build -t spack/packages.spack.io:latest -f share/spack/docker/package-index/Dockerfile . ``` Local test: ``` docker run -p 8080:80 spack/packages.spack.io:latest ``` * Travis-CI: Remove Docker Remove leftover docker stages from Travis-CI. * Simplify Split Call
2019-11-26Bump miniconda2 miniconda3 to 4.7.12.1 . (#13897)健美猞猁2-0/+2
2019-11-26Variant for enabling tests, versions, cleanup (#13882)Rao Garimella1-33/+52
* add variant for enabling testing * enable tests and clean up other options * add numbered versions * updates to avoid enable_tests variant; correct versioning * fixes for style * appropriate partitioners are enabled if 'all' is specified - so no need to check in spec * define url so spack knows how to fetch the tar.gz files for different versions
2019-11-26Updating package for SOLLVE (#12607)Vivek Kale1-0/+274
* Add SOLLVE package with Shintaro's help on rebasing. Co-authored-by: Vivek Kale <vivek.lkale@gmail.com> * sollve: reflect suggestions by @adamjstewart * sollve: update target detection Copied from llvm/package.py. * sollve: fix a few things - url -> git - remove git in version() - explicit cmake options in else clauses - add newlines for better readability
2019-11-26Py-pymol package has been updated to the latest version (#13764)Hector Martinez-Seara2-13/+31
* Added new package libmmtf-cpp required by py-pymol * Added SPDX-License-Identifier to MIT * Updated py-pymol to version 2.3.0 * py-pymol: Added mising py-pmw dependency * py-pymol: flake8 minor change * py-pymol: Added patch for apbstools_tcltk8.6 This patch is borrowed from archlinux https://bugs.archlinux.org/task/39526 * libmmtf-cpp: flake8 compliance * libmmtf-cpp: flake8 compliance * libmmtf-cpp: change license to (Apache-2.0 OR MIT) when refering to the MIT license * libmmtf-cpp: Added header text about license as in examples * py-pymol: removed unnecesary dependency mesa-glu * py-pymol: removed unnecesary patch * py-pymol: Removed empty line at the end of the file to comply with flake8.
2019-11-26cmake: add support for xlf and ninja (#13796)Christoph Junghans1-0/+4
2019-11-26httperf: added new package (#13875)darmac1-0/+26
2019-11-25Add the py-coloredlogs package (#13852)Joe Koning1-0/+18
* Add the py-coloredlogs package * Remove extraneous line. * Remove dashed line. * Add version for humanfriendly dep and build to type. * Change source url to use pypi.
2019-11-25Forgot a trailing _PLUGIN (#13884)Hadrien G1-1/+1
2019-11-25add new versions to py-mistune (#13887)Andreas Baumbach1-0/+8
2019-11-25Add intel-tbb versions 2019.5 to 2019.8 (#13891)Tim Haines1-0/+4
2019-11-25Improved library access for lm-sensors and implemented use in papi. (#13885)G-Ragghianti2-4/+11
* Improved library access for lm-sensors and implemented use in papi. * Fixed comment formatting * Removed explicit "None" from return of libs(). * Added two new software release versions.
2019-11-25add package cuda@10.2.89 (#13819)René Widera2-5/+16
* add package cuda@10.2.89 add CUDA 10.2 support * CudaPackage: Add 10.2 Conflicts * CUDA: Modernize Run Environment See #11115
2019-11-25Updated LAMMPS package to use gpu and kokkos options. (#13886)David M. Rogers1-2/+25
2019-11-25Fix ROOT dependencies (for +r variant) (#13839)iarspider1-2/+2
2019-11-25Mapnik: fix runtime error involving py-pycairo and PDF (#13865)Sinan2-5/+7
* fix runtime error involving py-pycairo and PDF * Update var/spack/repos/builtin/packages/py-python-mapnik/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * fix env setup
2019-11-25Add the py-importlib-resources package (#13854)Joe Koning1-0/+22
* Add the py-importlib_re package * Rename package to conform with spack naming convention. * Rename package to py-importlib-resources Add python depend modules for previous python versions and depends_on python. * Add whitespaces.
2019-11-25cctools: fix python related error. (#13802)Toyohisa Kameyama3-3/+144
* cctools: fix python related error. * patch bugfix.
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