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2018-04-12perl-perlio-utf8-strict: Create new package (#7738)Eric1-0/+34
2018-04-12supernova: new package (#7719)Yifan Zhu1-0/+65
* runing a test * supernova: new package * removed with working_dir line
2018-04-12Specify default providers for the glu virtual package. (#7733)Veselin Dobrev1-0/+1
2018-04-12perl-text-simpletable: Create new package (#7739)Eric1-0/+34
2018-04-12New package r-spem (#7657)Yifan Zhu3-0/+114
* r-truncnorm: new package added * r-solnp: new package added * r-spem: new package added * r-truncnorm: removed dependency r-testthat
2018-04-12perl-math-matrixreal: Create new package (#7737)Eric1-0/+37
2018-04-12fix dependencies for matplotlib@2.2.2 (#7735)healther2-0/+37
2018-04-12perl-want: Create new package (#7734)Eric1-0/+34
2018-04-12glu: new virtual package; openglu: new package (#7162)Geoffrey Oxberry2-0/+88
* mesa-glu: now provides 'glu' (GL Utility library) * openglu: add package, provides glu * openglu: add custom fetcher, remove nonsense url Change openglu package to look like the opengl package in GitHub PR * [OpenGLU] Fix a typo
2018-04-12opengl: make error throw on install, not fetch (#7063)Geoffrey Oxberry1-3/+35
* opengl: make error throw on install, not fetch * opengl: add configuration advice for darwin * opengl: add more versions of GL/OpenGL * opengl: improve documentation in comments * [OpenGL] Fix formatting
2018-04-12Fixes conflicts in OSX nightly tests (#7732)Massimiliano Culpo1-1/+1
fixes #7593 Unit tests on OSX are trying to concretize mpileaks, and they fail due to a conflict in the package: "%gcc@7.2.0:" conflicts with "elfutils@0.163" This solves the issue asking explicitly to concretize against elfutils@1.170
2018-04-11add package py-gdbgui (#7715)healther1-0/+43
* add package py-gdbgui Change-Id: I553e1e4c4f6385348190817199e05b25522b57b4 * fix alignment * add setuptool runtimedependency * add gdb run dependency
2018-04-11Package.provides account for v deps that are provided conditionally (#7716)Massimiliano Culpo2-1/+13
fixes #7705 Package.provides now checks constraints to ensure that a spec provides a given virtual package. Note that 'strict=True' is not passed to satisfies as this function is also used during concretization.
2018-04-11Add package py-slurm-pipeline (#7681)healther1-0/+41
* add package py-slurm-pipeline Change-Id: Iade405a7e96f04e476cea76e460cac2ebdf21f95 * add missing py-six dependency Change-Id: I382fa4139880c1a61af3f314c74ed6e7c2e88c5b * Update package.py * Update package.py * Update package.py * fix flake8
2018-04-11Add ANTs package (#7717)Simon Flood1-0/+48
* Add ants package Add a package for ANTs (version 2.2.0) * Update package.py * Update package.py * Update package.py * Update package.py * Update package.py
2018-04-11add package py-python-socketio (#7721)healther1-0/+43
* add package py-python-socketio * fix indention * add description to eventlet variant * fix dependencies Change-Id: I425ae165dfcce30df6cbbd671cd6ef1bef5078dc * Update package.py * Update package.py * Update package.py * Update package.py
2018-04-10py-cnvkit: add new package (#7688)peetsv1-0/+46
* py-cnvkit: add new package * updating dependencies * correcting flake8 error * adding py-setuptools dependency
2018-04-10add package py-gevent (#7712)healther1-0/+40
* add package py-gevent Change-Id: I49722e02a961f20b9177ae8575b78b42bf6c01c9 * fix alignment * add cffi dependency
2018-04-10add package py-eventlet (#7722)healther1-0/+37
2018-04-10add package py-greenlet (#7720)healther1-0/+33
* add package py-greenlet * remove optional setuptools dependency
2018-04-10add package py-python-engineio (#7723)healther1-0/+39
* add package py-python-engineio * flake8 fix
2018-04-10lammps: add v20180316 (#7725)Christoph Junghans2-2/+5
* lammps: add v20180316 * add latte@1.1.1 and make lammps use it
2018-04-10hwloc: add v 2.0.1 (#7724)Daniel Topa1-1/+2
Signed-off-by: Dan Topa <dantopa@lanl.gov>
2018-04-10go: Update to 1.10.1 (#7708)Michael Kuhn2-11/+15
Also update go-bootstrap to the 20171003 snapshot.
2018-04-10add package py-pygdbmi (#7711)healther1-0/+36
* add package py-pygdbmi Change-Id: I9850ccecebb1d46e983cda39c371caab23ad61e9 * add runtime setuptools dependency (from distutils import) * remove unnecessary run dependency
2018-04-10Added C-Lime Package (#7707)thecorkscrew1-0/+37
* Added C-Lime Package * Small fix
2018-04-10add py-cython@0.28.1 (#7709)healther1-1/+1
Change-Id: I7e3931f8224a367ce1657256b3100139abcc4f86
2018-04-10add py-flask@0.12.2 (#7710)healther1-0/+1
Change-Id: I51887f661e6dd896a9f740b51f4e81bdf532f9b4
2018-04-10add package py-flask-compress (#7713)healther1-0/+38
* add package py-flaks-compress Change-Id: Ia67f292364f339907c7c0a5bd707a7a1e69877be * fix alignment * linebreak to make flake8 happy
2018-04-10add package py-flask-socketio (#7714)healther1-0/+44
* add package py-flask-socketio Change-Id: Ib9bb41b9c3de06f07ffb47449edf02476827b610 * fix alignment * add missing werkzeug dependency
2018-04-10Perl file copy recursive 0.40 (#7718)peetsv1-0/+1
* perl-file-copy-recursive: add newer version v0.40
2018-04-10Add latest versions of libxcb and xcb-proto (#7650)Adam J. Stewart2-5/+17
2018-04-10Fix GCC 6/7 build on APFS (#7696)Adam J. Stewart1-8/+7
2018-04-10fermi: Create new package. (#7702)lingnanyuan1-0/+42
* fermi: Create new package. * fermi: Add missing dependency. * fermi: Change dependency type of perl to run.
2018-04-09wgsim: Create new package. (#7674)lingnanyuan1-0/+47
* wgsim: Create new package. * fix flake8 error. * wgsim: change cc compiler to spack_cc. * add missing dependency.
2018-04-08new package "DSRC" (bioinformatics) (#7680)Sinan1-0/+45
* new package "DSRC" (bioinformatics) * remove uncommented line * get rid of unnecessary import * convert to MakefilePackage class * get rid of make() in install phase, remove spaces * make flake8 happy!
2018-04-07Add Package: nlohmann_json (#7690)Axel Huebl2-1/+61
Adds a spack package for the JSON C++ library https://github.com/nlohmann/json
2018-04-07Catch2: make install (#7668)Axel Huebl1-1/+18
Add a proper install variant for Catch(2). This allows to use Catch2 downstram with `pkg-config` and CMake's `find_package` commands via standard environment hints.
2018-04-06py-pyfaidx: adding new package (#7684)peetsv1-0/+37
* py-pyfaidx: adding new package * updating the url
2018-04-06Darshan 3.1.6 (#7686)carns2-0/+4
* update darshan-util to 3.1.6, add bzip2 option * add darshan-runtime 3.1.6
2018-04-06Fix build of xerces-c (#7611)Eric Müller1-0/+5
The build requires libiconv (but it doesn't find it when not providing LDFLAGS).
2018-04-06Package 'serf': link to the spack provided zlib installation. (#7667)Sergey Kosukhin1-0/+13
2018-04-06hapdip: Create new package and its dependency k8. (#7685)lingnanyuan2-0/+85
* k8: Create new package. * hapdip: Create new package. * Change description.
2018-04-05readfq: Create new package. (#7673)lingnanyuan1-0/+38
* readfq: Create new package. * fix flake8 error
2018-04-05Don't prepend Tcl/Python to PATH if in system directory (#7677)Adam J. Stewart2-2/+9
2018-04-05add package py-discover (#7671)healther1-0/+34
Change-Id: I67b9e4eb4dfd3a962b7fe8840f5eb012fcd009cc
2018-04-04rsync: adding version 3.1.3 (#7669)peetsv1-0/+1
2018-04-04make view understand hashes (#7573)healther1-4/+5
Fixes #7548 This updates the "spack view" command to use the same parsing logic as "spack install" on the user-provided specs. For example you can provide a DAG hash to refer to an exact installed spec instead of specifying name, compiler, etc.
2018-04-04octopus: add 7.3 (#7666)Denis Davydov1-5/+6
2018-04-04mvapich2: added version 2.3rc1 + variant to use alloca if available (#7595)Massimiliano Culpo2-35/+16
* mvapich2: added version 2.3rc1 + variant to use alloca if available * mvapich2: removed version 1.9 + cleaned recipe
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