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2023-11-18Automated deployment to update package flux-security 2023-11-18 (#41152)Vanessasaurus1-0/+1
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2023-11-18py-pygithub: new versions, dependencies (#41072)Wouter Deconinck1-3/+12
* py-pygithub: new versions, dependencies * py-pygithub: reordered dependencies per requirements.txt * py-pygithub: depends on py-setuptools-scm
2023-11-18py-bokeh: new version 3.3.1, and supporting packages (#41089)Wouter Deconinck2-3/+39
* py-bokeh: new version 3.3.1 * py-xyzservices: new package * py-bokeh, py-xyzservices: update homepages Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com> * py-bokeh: depends on newer py-numpy Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com> * Apply suggestions from code review Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-11-18Update py-elephant (#39200)Moritz Kern1-24/+32
* add elephant version v0.12.0 and 0.13.0 * update copyright * reformat according to black format errors * restore maintainers directive * Update var/spack/repos/builtin/packages/py-elephant/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * add dependency python 3.8+ * sorted dependencies * sort dependencies from newest to oldest * add deps for @master * removed dependency for master, since it is included in 0.12.0: * removed dependency for python 3.7+ , since 3.7+ is the lowest supported version anyway * removed specific deps for master, since master is always newer than all stable releases * updated numpy dependency for Elephant 0.12.0: * Update var/spack/repos/builtin/packages/py-elephant/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-elephant/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * removed upper bounds for py-quantities, omitting v0.14.0 * add elephant v0.14.0 * update required quantities version --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-11-18py-cleo: add versions 2.0.0 2.0.1; add maintainers (#40611)Lydéric Debusschère5-9/+66
* py-cleo: add versions 2.0.0 2.0.1; add maintainers * py-cleo: add forgotten dependence * py-cleo: update from review: remove preferred version, remove a dependence, fix py-rapidfuzz version * py-cleo: deprecated version 1.0.0a5; add version 1.0.0; update dependences * py-cleo: add version 2.1.0; update version range of dependences * py-crashtest: add version 0.4.1, dependence of py-cleo * py-cleo: update dependence Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * py-cleo: update dependence py-clikit Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * py-cleo: update dependence py-rapidfuzz Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * py-rapidfuzz: add version 2.2.0 dependence of py-cleo@2 * py-cleo: fix version range of py-crashtest * py-rapidfuzz: fix dependences; add py-rapidfuzz-capi and py-jarowinkler --------- Co-authored-by: LydDeb <lyderic.debusschere@eolen.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-11-18Release DLIO Profiler Py 0.0.2 (#41127)Hariharan Devarajan1-3/+10
2023-11-18py-jsonpath-ng: version bump (#41078)Erik Heeren1-2/+4
* py-jsonpath-ng: version bump * py-jsonpath-ng: fix typo in version number
2023-11-18py-gitpython: version bump (#41079)Erik Heeren1-0/+2
2023-11-18py-pyh5py: reorder dependencies from newest version to oldest (#41137)Juan Miguel Carceller1-12/+12
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2023-11-18Fix invalid escape sequences (#41130)Michael Kuhn3-4/+6
Using Python 3.12 in a freshly cloned Spack repository results in warnings such as this: ``` ==> Warning: invalid escape sequence '\$' ==> Warning: invalid escape sequence '\(' ==> Warning: invalid escape sequence '\.' ==> Warning: invalid escape sequence '\.' ``` These will turn into errors in 3.13, so fix them. All of them actually do not need to be regexes, so convert them into normal strings.
2023-11-18Update py-quantities (#39201)Moritz Kern1-6/+7
* add version 0.14.1 * formatting * style checks * fix style errors * remove old versions * fix typo * style * update maintainers directive * sort dependencies from newest to oldest * Update var/spack/repos/builtin/packages/py-quantities/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-quantities/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * sort dependencies from newest to oldest * removed upper bounds for python version * Update var/spack/repos/builtin/packages/py-quantities/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * remove dependency on Python 3.7 +, since 3.7 is the lowest supported version anyway --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-11-17Hydrogen package: avoid newer openblas on power (#41143)Brian Van Essen1-1/+2
2023-11-17Add cxxstd variant to ecflow, update with latest ecflow version (#41120)Stephen Herbener1-1/+5
* Added recent versions to ecflow/package.py, as well as added a cxxstd variant that is needed to set BOOST_NO_CXX98_FUNCTION_BASE appropriately when building with C++17 standard. * Fixed pep8 style error in the ecflow package.py script. * Remov * Removed cxxstd variant since the ecflow cmake configuration was already specifying to use the c++17 standard for newer versions. The use of the BOOST_NO_CXX98_FUNCTION_BASE define is now triggered by the ecflow version.
2023-11-17Permit packages that depend on Intel oneAPI packages to access sdk (#41117)Mark Abraham5-3/+33
* Permit packages that depend on Intel oneAPI packages to access sdk * Implement and use IntelOneapiLibraryPackageWithSdk * Restore libs property to IntelOneapiLibraryPackage * Conform to style * Provide new class to infrastructure * Treat sdk/include as the main include
2023-11-17root: new version 6.30.00 (#41118)Wouter Deconinck2-2/+8
* root: new version 6.30.00 There is a new release of ROOT, v6.30.00, with release notes at https://root.cern/doc/v630/release-notes.html. In addition to some deprecations of build options, this updates the C++ standard to 17 or higher (well, 20), and increases the vc minimum version. * vc: new version 1.4.4 * [@spackbot] updating style on behalf of wdconinc --------- Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
2023-11-17lcio: Add latest tag 2.20.1 (#41102)Thomas Madlener1-0/+1
2023-11-17py-archspec: add v0.2.2 (#41110)Massimiliano Culpo1-1/+2
2023-11-17llvm: patch missing cstdint include (#41108)Harmen Stoppels1-0/+6
* llvm: patch missing cstdint include
2023-11-16[doxygen] Add versions 1.9.7 and 1.9.8. (#41123)Kelly (KT) Thompson1-0/+2
* [doxygen] Add versions 1.9.7 and 1.9.8. * Fix has for 1.9.8.
2023-11-16r-rlang: add v1.1.1, v1.1.2 (#41114)bk1-0/+2
2023-11-16Update amrex maintainers (#41122)Weiqun Zhang1-1/+1
2023-11-16clhep: new version 2.4.7.1 (#41113)Wouter Deconinck1-0/+2
2023-11-16libgcrypt: add v1.10.3 (#41111)Massimiliano Culpo1-0/+1
2023-11-16podio: Add latest tag 0.17.3 (#41103)Thomas Madlener1-0/+1
2023-11-16Use preferred capitalization of "Slurm" (#41109)Tim Wickberg5-5/+5
https://slurm.schedmd.com/faq.html#acronym
2023-11-16Improve the error message for deprecated preferences (#41075)Massimiliano Culpo3-7/+53
Improves the warning for deprecated preferences, and adds a configuration audit to get files:lines details of the issues. Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-11-16Update PyTorch ecosystem (#41105)Adam J. Stewart5-0/+9
2023-11-16py-lightning: add v2.1.2 (#41106)Adam J. Stewart1-0/+1
2023-11-16package/lemon: improve (#40971)Sinan1-0/+27
* package/lemon: improve * fix bug * final improvements * use f strings for boolean options, add soplex as TODO * leave +coin as TODO * depends on bzip2 when +coin * tidy --------- Co-authored-by: sbulut <sbulut@3vgeomatics.com> Co-authored-by: Sinan81 <Sinan81@users.noreply.github.com>
2023-11-16enable rocAL and add MIVisionX tests (#39630)afzpatel6-1/+239
* initial commit to enable rocAL and add MIVisionX tests * fix styling * updated checksum for libjpeg patches * update for 5.6 * use satisfies for checking spec version
2023-11-16Updates for Ospray@3.0.0 (#41054)Martin Aumüller5-3/+13
* rkcommon: add v1.12.0 * openimagedenoise: add v2.1.0 * openvkl: 1.3.2 only compatible with rkcommon@:1.11 * openvkl: add v2.0.0 * ospray: add v3.0.0 * paraview: not yet compatible with ospray@3
2023-11-16Add audit check to spot `when=` arguments using wrong named specs (#41107)Massimiliano Culpo9-24/+71
* Add audit check to spot when= arguments using named specs * Fix package issues caught by the new audit
2023-11-16Add patch for libffi@3.4.4 since failing to install using clang@15 (#41083)Auriane R1-0/+5
2023-11-15Update package.py (#41092)Sergio Sánchez Ramírez1-0/+1
2023-11-15deal.II: Require at least taskflow 3.4 (#41095)Daniel Arndt1-1/+1
2023-11-15justbuild: add version v1.2.3 (#41084)Alberto Sartori1-0/+1
2023-11-15taskflow: add v3.6.0 (#41098)Satish Balay1-0/+1
2023-11-15docs: packages config on separate page, demote bootstrapping (#41085)Harmen Stoppels5-547/+553
2023-11-15cp2k: add hipfft and hipblas explicitly (#41074)Rocco Meli1-0/+4
2023-11-15hpctoolkit: Add depends on autotools for @develop (#41067)Jonathon Anderson1-0/+5
2023-11-15mrtrix3: fix some issues w/ 3.0.3 and add 3.0.4 (#41036)moloney2-3/+34
2023-11-15libevent: call autoreconf directly instead of via autogen.sh (#41057)Jonathon Anderson1-1/+1
2023-11-15ParaView: Add release candidate 5.12.0-RC1 (#41009)kwryankrattiger1-0/+3
* ParaView: Add release candidate 5.12.0-RC1 * [@spackbot] updating style on behalf of kwryankrattiger
2023-11-14esmf: add v8.6.0 (#41066)Gerhard Theurich1-1/+2
2023-11-14Fix typo in mumps recipe (#41062)Julien Cortial1-1/+3
* Fix typo in mumps recipe * Adopt mumps package
2023-11-14xsdk: add version 1.0.0 (#40825)Satish Balay1-8/+89
xsdk: add +sycl variant - with amrex, arborx, ginkgo, petsc, sundials xsdk: add +pflotran variant xsdk: enable hypre+rocm xsdk: enable superlu-dist for GPU - but use trilinos~superlu-dist [as that breaks builds] xsdk: dealii: disable oce as it can cause intel-tbb-2017.6 to be picked up for some builds (for ex: gcc=13) and result in subsequent build failures
2023-11-14bison: conflict %oneapi due to possible miscompilation (#40860)Thomas-Ulrich1-0/+7
2023-11-14gmake: fix bootstrap (#41060)Harmen Stoppels3-0/+10
2023-11-14Add papyrus to the list of broken tests (#40923)Massimiliano Culpo1-0/+1
* Disable papyrus in the neoverse v1 pipeline See https://gitlab.spack.io/spack/spack/-/jobs/8983875 The job is hanging on tests for 6 hrs. * Add papyrus to broken tests instead of removing it
2023-11-14Fix infinite recursion when computing concretization errors (#41061)Massimiliano Culpo1-2/+9
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