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2021-09-24nemsio: Add v2.5.3, which includes dependency change, and maintainers (#26188)Edward Hartnett1-3/+11
2021-09-24py-torchvision: rename master -> main (#26160)Adam J. Stewart1-1/+2
2021-09-24intel-oneapi-mpi/mkl packages: add ilp64 support (#26045)Robert Cohn2-15/+42
2021-09-24added GFDL FMS package (#26191)Edward Hartnett1-0/+40
2021-09-24Pipelines: Disable ppc builds until we have resources or make it smaller ↵Scott Wittenburg1-24/+24
(#26238)
2021-09-24autotools.py/autoreconf: Show the depends_on()s to add to the package (#26115)bernhardkaindl1-4/+18
This commit shows a template for cut-and-paste into the package to fix it: ```py ==> fast-global-file-status: Executing phase: 'autoreconf' ==> Error: RuntimeError: Cannot generate configure: missing dependencies autoconf, automake, libtool. Please add the following lines to the package: depends_on('autoconf', type='build', when='@master') depends_on('automake', type='build', when='@master') depends_on('libtool', type='build', when='@master') Update the version (when='@master') as needed. ``` Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2021-09-24kmod: Add the missing depends on m4 and pkgconfig (#26137)bernhardkaindl1-2/+4
The build needs pkgconfig and lzma, m4 is already added by autoconf. Disable generation of kmod manpages as spack does not have xsltproc yet. Co-authored-by: Bernhard Kaindl <bernhard.kaindl@ait.ac.at>
2021-09-24landsfcutil: new package (#26193)Edward Hartnett1-0/+20
2021-09-24acts: add v13.0.0 (#26196)Wouter Deconinck1-1/+5
2021-09-24ufs-utils: added NOAA maintainers (#26201)Edward Hartnett1-2/+3
2021-09-24Bump cmake 3.21.3 (#26186)Harmen Stoppels1-0/+1
2021-09-24Added new versions and deprecated vulnerable versions (#26206)Troy Redfearn1-12/+18
2021-09-24Add 'radiuss' tags to RADIUSS packages (#26212)Tamara Dahlgren26-1/+30
2021-09-24g2tmpl: added NOAA maintainers (#26192)Edward Hartnett1-2/+4
2021-09-24added NOAA package grib-util (#26200)Edward Hartnett1-0/+34
* added NOAA package grib-util
2021-09-24Added mising '+' for kokkos (#26202)Ben Bergen1-1/+1
2021-09-24added NOAA ncio package (#26194)Edward Hartnett1-0/+23
2021-09-24added NOAA package nemsiogfs (#26195)Edward Hartnett1-0/+22
2021-09-24assimp: depends_on zlib (#26199)Wouter Deconinck1-0/+1
Assimp searches for zlib (or builds its own version). When it searches, it can find a system install that is not provided by spack. Ref: https://github.com/assimp/assimp/blob/d286aadbdf82c0860ce6c5dbdcab80cba4828606/CMakeLists.txt#L451
2021-09-24gradle: add new versions through 7.2 (#26203)Andrew-Dunning-NNL1-0/+12
2021-09-24gosamcontrib: add libs variants (#26030)iarspider1-1/+21
2021-09-24helics: Add versions 2.8.0, 3.0.0, and 3.0.1 (#26046)Ryan Mast1-0/+3
2021-09-24Remove centos:6 image references (#26095)Harmen Stoppels4-86/+1
This was EOL November 30th, 2020. I believe the "builds" are failing on develop because of it.
2021-09-24opencascade: add v7.5.3; added VTK INCLUDE cmake flag (#26209)Wouter Deconinck1-0/+6
2021-09-24Use Leap instead of Tumbleweed for e2e bootstrapping test (#26205)Massimiliano Culpo1-1/+1
Tumbleweed has been broken for a couple of days. The attempt to fix it in #26170 didn't really work. Let's try to move to a more stable release series for OpenSuse.
2021-09-24radical cybertools: add v1.8.0 (#26215)Mikhail Titov4-4/+9
2021-09-24g2: add maintainers and version 3.4.5 (#26105)Edward Hartnett1-2/+5
* added new release, added noaa software maintainers to maintainer list * updated comment * removed trailing whitespace
2021-09-23fontconfig: add dependency python (#25960)kjrstory1-0/+1
2021-09-23gperftools package: add variants (#26032)iarspider1-1/+16
* Make libunwind optional * Add support for sized_delete and debugalloc Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov> Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2021-09-23h5py: new version 3.4 (#25935)Thomas Kluyver1-0/+1
No changes to dependencies or supported Python versions. https://docs.h5py.org/en/stable/whatsnew/3.4.html
2021-09-23python: Fix regression in python-2.7.17+-distutils-C++.patch (#25821)bernhardkaindl3-0/+260
2021-09-23SQLite: make variants discoverable (#25885)Christoph Conrads1-0/+49
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2021-09-23Pin opensuse image in bootstrap tests (#26170)Harmen Stoppels1-1/+1
Currently zypper in opensuse containers throws 'not permitted' Temporarily fix the digest until they fixed their upstream package manager issues
2021-09-22Merge tag 'v0.16.3' into developGregory Becker0-0/+0
2021-09-22dihydrogen package: add missing dependency (#25896)Brian Van Essen1-0/+1
2021-09-22added NOAA software maintainers to maintainer list (#26112)Edward Hartnett1-1/+1
2021-09-22pango: Fix build: restore autotools-based versions (#26084)bernhardkaindl1-6/+2
Fix the build of pango and it's 20 dependents: Only provide the versions which support the build using autotools (conversion to MesonPackage didn't progress) This only restores the list of versions of August 10, before the build broke.
2021-09-22Add Rclone v1.56.1 (#26124)Alec Scott1-1/+2
2021-09-22add conflict (#26028)albestro1-0/+3
2021-09-22Add Picard v2.26.2 (#26125)Alec Scott1-1/+2
2021-09-22su2: add version 7.0.4-7.2.0 (#25956)kjrstory1-0/+9
2021-09-21Add Slepc v3.15.2 (#26123)Alec Scott1-1/+2
2021-09-21gfsio: add NOAA software maintainers (#26106)Edward Hartnett1-2/+4
* added NOAA software maintainers to maintainer list * added comment about NCEPLIBS
2021-09-21Bump version and update changelogv0.16.3Harmen Stoppels2-1/+13
2021-09-21Fix style testsHarmen Stoppels1-1/+1
2021-09-21Remove centos:6 image referencesHarmen Stoppels4-86/+1
This was EOL November 30th, 2020. I believe the "builds" are failing on develop because of it.
2021-09-21docker: remove boto3 from CentOS 6 since it requires and updated pip (#24813)Massimiliano Culpo1-1/+0
2021-09-21docker: Fix CentOS 6 build on Docker Hub (#24804)Massimiliano Culpo1-0/+3
This change make yum usable again on CentOS 6
2021-09-21Ensure all roots of an installed environment are marked explicit in db (#24277)Greg Becker2-0/+28
2021-09-21locks: only open lockfiles once instead of for every lock held (#24794)Todd Gamblin1-20/+127
This adds lockfile tracking to Spack's lock mechanism, so that we ensure that there is only one open file descriptor per inode. The `fcntl` locks that Spack uses are associated with an inode and a process. This is convenient, because if a process exits, it releases its locks. Unfortunately, this also means that if you close a file, *all* locks associated with that file's inode are released, regardless of whether the process has any other open file descriptors on it. Because of this, we need to track open lock files so that we only close them when a process no longer needs them. We do this by tracking each lockfile by its inode and process id. This has several nice properties: 1. Tracking by pid ensures that, if we fork, we don't inadvertently track the parent process's lockfiles. `fcntl` locks are not inherited across forks, so we'll just track new lockfiles in the child. 2. Tracking by inode ensures that referencs are counted per inode, and that we don't inadvertently close a file whose inode still has open locks. 3. Tracking by both pid and inode ensures that we only open lockfiles the minimum number of times necessary for the locks we have. Note: as mentioned elsewhere, these locks aren't thread safe -- they're designed to work in Python and assume the GIL. Tasks: - [x] Introduce an `OpenFileTracker` class to track open file descriptors by inode. - [x] Reference-count open file descriptors and only close them if they're no longer needed (this avoids inadvertently releasing locks that should not be released).
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