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2020-09-15namd: Added optimization auto-selection for skylake-X+ CPU for 2.14 and ↵Nikolay Simakov1-6/+68
2.15a1 (AVX512 tile) (#18671)
2020-09-15CLAW: update the package (#18673)Sergey Kosukhin2-9/+46
2020-09-15Qbox minor issues 18664 (#18665)Tom Payerle2-5/+121
* qbox: install to correct directory structure * qbox: Have qb executable put in bin rather than src subdir * qbox: Fix python script shebangs to use python from path * qbox: Add dependencies on gnuplot, python2 for utilities * qbox: fix flake8 issue * qbox: Add $prefix/util to PATH
2020-09-15nseg: add return 0; to void functions (#18481)ketsubouchi1-0/+10
2020-09-15fish: add dependencies, patch MacOS (#18526)Adam J. Stewart2-6/+52
2020-09-15py-cmocean: added new package at v2.0 (#18614)Adam J. Stewart1-0/+18
2020-09-15Add setuptools run-time dependency to various Python packages (#18616)Adam J. Stewart13-13/+13
2020-09-15py-jupyterlab-pygments: added new package at v0.1.1 (#18627)Adam J. Stewart1-0/+16
2020-09-15py-nest-asyncio: add new package at v1.4.0 (#18629)Adam J. Stewart1-0/+16
2020-09-15py-ipykernel: added v5.3.4, moved url to PyPI (#18630)Adam J. Stewart1-21/+25
2020-09-15py-ipython: added v7.18.1 (#18631)Adam J. Stewart1-24/+31
2020-09-15py-jupyter-client: added v6.1.7, moved url to PyPI (#18632)Adam J. Stewart1-14/+15
2020-09-15py-jupyter-core: updated the type of the setuptools dependency (#18633)Adam J. Stewart1-2/+1
2020-09-15py-jupyterlab-server: added v1.2.0 (#18634)Adam J. Stewart1-3/+4
2020-09-15py-argon2-cffi: added new package at v20.1.0 (#18626)Adam J. Stewart1-0/+21
2020-09-15py-jupyterlab: added v2.2.7 (#18635)Adam J. Stewart1-9/+6
2020-09-15py-nbformat: add v5.0.7, moved url to PyPI (#18637)Adam J. Stewart1-9/+8
2020-09-15py-terminado: added v0.8.3 (#18639)Adam J. Stewart1-4/+3
2020-09-15py-traitlets: added v5.0.4, moved url to PyPI (#18640)Adam J. Stewart1-12/+15
2020-09-14Added Missing Tag to Cradl Spackage (#18669)Robert Pavel1-0/+2
Added missing proxy apps tag to cradl spackage
2020-09-14CRADL Machine Learning Proxy Spackage (#18668)Robert Pavel3-0/+72
* Initial CRADL Spackage Work Currently resolving ```--single-version-externally-managed``` error * Fixed GPUtil Issues Thanks to Vinay Ramakrishnaiah for overwriting install * Finished CRADL Install Function Finished CRADL install function which is basically copying the scripts to the install directory. Also resolved flake8 issues for PR purposes
2020-09-14SIRIUS: Update dependencies (#18622)Simon Frasch1-1/+12
* sirius: Fixed dependency spfft when build with +rocm * sirius: Added new dependency spla for develop build * sirius: Added maintainer
2020-09-14Make sure each develop pipeline tests associated commitScott Wittenburg1-1/+1
2020-09-14Do not assume we sit in the directory where the env file lives.Scott Wittenburg1-3/+8
2020-09-14Remove :<name> interpolation, add SPACK_VERSION variablesScott Wittenburg3-128/+94
Also fix issues with documentation to reflect changes
2020-09-14Document pipeline keys which can be global but overriddenScott Wittenburg1-6/+108
Update pipelines documentation to describe how 'tags', 'variables', 'image', 'before_script', 'script', and 'after_script' can be supplied at the top level, to be used by any of the runner mappings, and also overridden by any of the runner mappings. Also show an example of capturing the custom spack SHA at pipeline generation time, so all jobs are sure to run with the same version of spack, as a means to illustrate the $env:VARIABLE_NAME syntax.
2020-09-14Allow overridable global runner attributesScott Wittenburg3-11/+205
2020-09-14Update pipeline documentation to describe user-provided scriptsScott Wittenburg1-17/+73
2020-09-14Add test for variable interpolation and scriptsScott Wittenburg1-0/+82
2020-09-14Support variable interpolation at pipeline generation timeScott Wittenburg1-0/+10
2020-09-14Provide your own script, before_script, and after_scriptScott Wittenburg5-112/+35
2020-09-14Fix a typo in test/concretize.pyi (#18662)Massimiliano Culpo1-1/+1
2020-09-14Add new package: webbench (#18650)darmac1-0/+28
* Add new package: webbench * Update var/spack/repos/builtin/packages/webbench/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-14cpio: add --rtlib=compiler-rt for %fj (#18619)ketsubouchi1-4/+5
* cpio: add --rtlib=compiler-rt for %fj * cpio: simplify if * Update var/spack/repos/builtin/packages/cpio/package.py This seems better. Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-13ngmlr: support for aarch64 (#18621)t-nojiri3-0/+59
* ngmlr: support for aarch64 * ngmlr: Fixed patch file
2020-09-13nek5000: Support Fujitsu fortran (#18659)ketsubouchi2-0/+49
2020-09-13Updated FZF package for newer versions. (#18608)Paul1-10/+17
* Support for external find. * Added latest version (0.22.0) and conditions to package to continue support for older versions.
2020-09-13use github for download (#18657)Joseph Wang1-1/+1
2020-09-12new package: py-reproject (#18641)Andrew W Elble3-0/+52
* new package: py-reproject add setuptools build/run dep to py-astropy-healpix * fixes * fix
2020-09-12Add new package: delta (#18648)darmac1-0/+28
2020-09-12cvs: add a patch for segv issue (#18649)darmac1-0/+5
2020-09-12Add new package: dbxtool (#18651)darmac1-0/+25
2020-09-12Add new package: geoip-api-c (#18653)darmac1-0/+23
2020-09-12Add new package: libspiro (#18654)darmac1-0/+22
2020-09-12Add new package: hping (#18311)darmac2-0/+66
* Add new package: hping * Update var/spack/repos/builtin/packages/hping/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/hping/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update package.py Fix flake8 errors Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-12Add new package: jetty-project (#18555)darmac1-0/+20
* Add new package: jetty-project * refine dependency * refine maven version
2020-09-11bugfix: include configuration ignoring files with the same basename (#18487)Richarda Butler2-2/+43
* Use the config path instead of the basename * Removing unused variables Co-authored-by: Greg Becker <becker33@llnl.gov> * Test Making sure if there are 2 include config files with the same basename they are both implemented * Edit test assert Co-authored-by: Greg Becker <becker33@llnl.gov>
2020-09-11ncurses: adding external support. (#18609)Robert Blake1-7/+39
* ncurses: adding external support. * Update var/spack/repos/builtin/packages/ncurses/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/ncurses/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/ncurses/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Fixing includes. Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-11Environments: Avoid inconsistent state on failed write (#18538)Massimiliano Culpo4-19/+206
Fixes #18441 When writing an environment, there are cases where the lock file for the environment may be removed. In this case there was a period between removing the lock file and writing the new manifest file where an exception could leave the manifest in its old state (in which case the lock and manifest would be out of sync). This adds a context manager which is used to restore the prior lock file state in cases where the manifest file cannot be written.
2020-09-11NumPy: added v1.19.2 (#18615)Adam J. Stewart1-1/+2
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