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* postgresql: Add icu4c dependency for versions 16+
* postgresql: make ICU an option
* postgresql: ICU variant only needed for v16+
* postgresql: Check for negated option
Check for negated option instead of negating the test
Co-authored-by: Alec Scott <hi@alecbcs.com>
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Co-authored-by: Alec Scott <hi@alecbcs.com>
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* Adding the perl-bio-db-bigfile package
* Adding perl-bio-ensembl-variation package
* Adding perl-bio-ensembl-io package
* Update package.py
* Update package.py
* Update package.py
* Update package.py
* Update package.py
* Updating dependent package handling
Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
* Updating dependent package handling
Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
* Reverting variants
Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
* Update package.py
* Rename package.py to package.py
* Update package.py
* Update package.py
* Update package.py
* Fix variant installation and dependencies
Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
* Styles
Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
* Removing unneeded dependencies
Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
* Update package.py
* Update package.py
* Update package.py
* perl-bio-ensembl: update sha256 of 112
* perl-bio-ensembl-variation: add perl-bio-ensembl-funcgen@{vers}
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Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
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* [py-flash-attn] Add version 2.6.3
* Update dependencies according to the latest version
* Add max_jobs environmental variable to avoid oom error
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Co-authored-by: aurianer <8trash-can8@protonmail.ch>
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https://github.com/spack/spack/pull/39666#issuecomment-2377609263
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* kafka: added new versions
* kafka: add back deprecated version
* kafka: fixing style
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* Revert "`cc`: ensure that RPATHs passed to linker are unique"
This reverts commit 2613a14c43b11ab92181bdd7ba57cd5b99f128a8.
* Revert "`cc`: simplify ordered list handling"
This reverts commit a76a48c42e8d6657f9dcb0500bff574651f317d9.
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Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
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Updated the terminology for the two types of environments to be
consistent with that used in the tutorial for the last three years.
Additionally:
* changed 'anonymous' to 'independent in environment command+test for consistency.
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Bumps [actions/checkout](https://github.com/actions/checkout) from 4.1.7 to 4.2.0.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](https://github.com/actions/checkout/compare/v4.1.7...d632683dd7b4114ad314bca15554477dd762a938)
---
updated-dependencies:
- dependency-name: actions/checkout
dependency-type: direct:production
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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* Update package.py
Update to pull Totalview tar files from AWS instead of requiring the user to download ahead of time. Use new license type, RLM license. Only allow for installs of versions using the new license type. 2024.1 and 2024.2. User selects the platform with the version as it is down from the TotalView downloads website.
* Update package.py
Update to pass style test
* Update package.py
fixing syle
* Updating to pass style check
removing more spaces to pass style check
* final style fixes
fixing the last 2 style errors
* Typo
Typo correction to pass style check
* REmove new line
removing new line character
* Ran black to reformat
Ran black to clear errors
* Changing to use sha256
Updating to use sha256 checksums for all TotalView files.
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Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
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* acts dependencies: new versions as of 2024/09/30
This commit adds new versions of acts, actsvg, and detray.
* Add vecmem version, patch detray version
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#45205 already removed previous use of single letter packages
from unit tests, in view of reserving `c` as a language (see #45191).
Some use of them has been re-introduced accidentally in #46382, and
is making unit-tests fail in the feature branch #45189 since there
`c` is a virtual package.
Signed-off-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
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* ffmpeg: add v7.0.2 (fix CVE)
* ffmpeg: fix license directive for gpl variant
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Co-authored-by: Bernhard Kaindl <contact@bernhard.kaindl.dev>
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* Kokkos: adding some sanity checks
We can pretty much guarentee that if bin, include or lib directory
is missing, something is wrong. Additionally KokkosCore_config.h
and Kokkos_Core.hpp. I guess technically we could look for all
public headers at least but that seems a bit overkill as well?
* Kokkos Kernels: adding sanity checks
* Remove check for lib directory since it might end up being lib64
* Also remove lib from kokkos-kernels sanity check
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* Add latest releases of Camp, RAJA, Umpire, CHAI and CARE
* Address review comments + blt requirement in Umpire
* CARE @develop & @main: Submodules -> False
* Changes in Umpire
* Changes in RAJA
* Changes in CHAI
* Changes in RAJA: prefer 'spec.satisfies' to 'in spec'
This is due to a non-equivalence in Spack with providers like mpi.
See e.g. https://github.com/spack/spack/pull/46126
* Changes in Umpire: prefer 'spec.satisfies' to 'in spec'
This is due to a non-equivalence in Spack with providers like mpi.
See e.g. https://github.com/spack/spack/pull/46126
* Changes in CARE:
Still need to update to CachedCMakePackage based on RADIUSS Spack Configs version
* Missing change in RAJA + changes in fmt
* Fix synta
* Changes in Camp
* Fix style
* CHAI: when ~raja, turn off RAJA in build system
* Fix: Ascent@0.9.3 does not support RAJA@2024.07.0
* Enforce same version constraint on Umpire as for RAJA
* Enforce preferred version of vtk-m in ascent 0.9.3
* Migrate CARE package to CachedCMakePackage
* Fix style in CARE package
* CARE: Apply changes for uniform implementation accross RADIUSS projects
* Caliper: move to CachedCMakePackage, from RADIUSS Spack Configs
* Adapt RAJA Perf to spack CI
* Activate CHAI, CARE and RAJAPerf in Spack CI
* Fixes and diffs with RADIUSS Spack Configs
* Caliper: fix
* Caliper : fix + RAJAPerf : style
* RAJAPerf: fixes
* Update maintainers
* raja-perf: fix license header
* raja-perf: Fix variant naming openmp_target -> omptarget
* raja-perf: style and blt dependency versions
* CARE: benchmark and examples off by default (like tests)
* CARE: fix missing variable
* Update var/spack/repos/builtin/packages/raja-perf/package.py
* CARE: fix branch name
* Revert changes in MFEM to pass CI
* Fix CXX17 condition in RAJA + add sycl option in RAJAPerf
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Co-authored-by: Rich Hornung <hornung1@llnl.gov>
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* cbindgen: new package
* Attempting to add rust dependencies for cbindgen
* adding rust-toml min rust version
* Removing dependencies that don't install with cargo
* cleanup broken packages
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Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
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* neocmake: add new package
* neocmake: add description, homepage, and license
* neocmakelsp: remove boilerplate
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On sysroot systems like gentoo prefix, as well as nix/guix, our "is
system path" logic is broken cause it's static.
Talking about "the system paths" is not helpful, we have to talk
about default search paths of the dynamic linker instead.
If glibc is recent enough, we can query the dynamic loader's default
search paths, which is a much more robust way to avoid registering
rpaths to system dirs, which can shadow Spack dirs.
This PR adds an **additional** filter on rpaths the compiler wrapper
adds, dropping rpaths that are default search paths. The PR **does
not** remove any of the original `is_system_path` code yet.
This fixes issues where build systems run just-built executables
linked against their *not-yet-installed libraries*, typically:
```
LD_LIBRARY_PATH=. ./exe
```
which happens in `perl`, `python`, and other non-cmake packages.
If a default path is rpath'ed, it takes precedence over
`LD_LIBRARY_PATH`, and a system library gets loaded instead
of the just-built library in the stage dir, breaking the build. If
default paths are not rpath'ed, then LD_LIBRARY_PATH takes
precedence, as is desired.
This PR additionally fixes an inconsistency in rpaths between
cmake and non-cmake packages. The cmake build system
computed rpaths by itself, but used a different order than
computed for the compiler wrapper. In fact it's not necessary
to compute rpaths at all, since we let cmake do that thanks to
`CMAKE_INSTALL_RPATH_USE_LINK_PATH`. This covers rpaths
for all dependencies. The only install rpaths we need to set are
`<install prefix>/{lib,lib64}`, which cmake unfortunately omits,
although it could also know these. Also, cmake does *not*
delete rpaths added by the toolchain (i.e. Spack's compiler
wrapper), so I don't think it should be controversial to simplify
things.
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* libexif: add v0.6.24 (fix CVEs)
* libexif: operator Version -> spec.satisfies
Co-authored-by: Alec Scott <hi@alecbcs.com>
---------
Co-authored-by: Alec Scott <hi@alecbcs.com>
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