Age | Commit message (Collapse) | Author | Files | Lines |
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* dealii: do not hardcode prefix.include for BLAS/LAPACK
* dealii: rename lapack_blas -> lapack_blas_libs
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Clang 8.0 now supports openmp 4.5 and many commerical compilers also support
openmp >= 4.0. This commit removes the openmp version guard and rely on CMake
to throw errors out when openmp version requirement is not satisified.
It also add options for precision control.
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* CGNS: Add option for 64-bit integers
Added the `int64` variant which will build the library using 64-bit integers for certain values. This gives the capability to have models with more than 2 billion cells and/or nodes.
Beginning with CGNS-3.1.0, two new typedef variables have been introduced to support 64-bit mode. The `cglong_t` typedef is always a 64-bit integer, and `cgsize_t` will be either a 32-bit or 64-bit integer depending on how the library was built. Many of the C functions in the MLL have been changed to to use `cgsize_t` instead of `int` in the arguments. These functions include any that may exceed the 2Gb limit of an` int`, e.g. zone dimensions, element data, boundary conditions, and connectivity. In Fortran, all integer data is taken to be `integer*4` for 32-bit and `integer*8` for 64-bit builds.
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* EXODUS: Update version and dependencies
Allow pulling master version from git. Note that I hope to have better versioning "soon"
Add requirement to use Netcdf-4.6.1 or later as those versions no longer require changing the `maxdims` or `maxvars` defines in the netcdf.h include file. With these versions, Exodus can use an unmodified NetCDF. These versions of NetCDF are also better than previous versions (code quality, performance, robustness).
It is still possible to run exodusII with previous NetCDF versions, but I don't know how to specify that the dependency where maxdims/maxvars variants are only needed for versions prior to 4.6.0.
I also removed the explicit dependency on HDF5 as that dependency should be applied through the NetCDF dependency.
* Remove white-space on blank line
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Add latest version of c-blosc.
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* Provide a new spackage for py-pint.
Pint is a Python package to define, operate and manipulate physical quantities:
the product of a numerical value and a unit of measurement. It allows arithmetic
operations between them and conversions from and to different
units. https://pint.readthedocs.io/en/latest/
* Switch hash from md5 to sha256.
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Add several new versions so that current functionality can be accessed. Current version is now 1.5.13.
Update `url`, `list_url`, and `list_depth` so spack can find available versions
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* PNETCDF: Update with current versions
Added latest versions. (1.10.0, 1.9.0, 1.8.1)
* PNETCDF: Revert version change in url
Reverted the change in the url variable version since not required.
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* NETCDF: Add new versions and update url
Added the 4.6.2 version which was recently released.
Changed the url to point to the official Unidata site and added option to retrieve master version from git.
* NETCDF: checksum and version updates
Reverted back to use of previous URL. The `https://github.com/Unidata/netcdf-c/archive/v4.6.2.tar.gz` location is newer, but spack does not seem to be able to access all of the versions at that location -- only goes back to 4.5.0. Since several installations are still providing 4.4.0, thought it best to go back to previous url. However, it looks like the naming convention has changed since 4.6.2, so need to provide explicit url for 4.6.2. Probably best to go to a `url_for_version()` scheme if that naming convention stays in place?
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Its in upstream with the upcoming 1.69 release though.
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* Disallow bcl2fastq2 on OS X
[Illumina's computing requirements][reqs] claim support for RHEL/CentOS and
go on to say:
> May be possible to install and run on other 64-bit Linux distributions or Unix variants.
The sufficient issue is its reliance of malloc.h. There may be more.
[reqs]: https://support.illumina.com/sequencing/sequencing_software/bcl2fastq-conversion-software/computing-requirements.html
* Add an informative msg for the user
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hdf5+fortran (#9986)
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Now that CMake is providing CMake release artifacts on github,
we should prefer those as they have better download speeds and
uptime.
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* packages/phist: new version 1.7.4 with new variant 'host' to enable/disable host-specific optimizations.
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This commit allows users to enable openmp, rendering, logging and mpi
in vtkm. Meanwhile, it adds support for cuda architecture selection.
[VTK-m 1.3 Release notes](https://gitlab.kitware.com/vtk/vtk-m/tags/v1.3.0)
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Overhaul hpctoolkit to AutotoolsPackage and to build its dependencies
directly from spack instead of using hpctoolkit-externals.
Remove hpctoolkit-externals since it's no longer needed.
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* py-jupyter-console: Add version 5.2.0
* py-jupyter-core: add version 4.4.0
* py-lxml: add version 4.2.5
* py-zmq: add version 17.1.2
* py-terminado: add version 0.8.1
* py-pexpect: add version 4.6.0
* py-pytables: add version 3.4.4
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* Add PLASMA 18.11.1 with optional Lua and test for headers
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* Add f18 package
* Fix flake8 errors
* Install the f18 binary into prefix.bin by hand
* Add spack-build into the path
* Fix the license header
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Fixes #9908
Spack was assembling flags in a manner that could in different
orderings for repeated concretizations of the same spec and config
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Fixes #9944
73c978d replaced a move with a copy, which cased rmdir to fail (as
it expects an empty directory). This switches to use `shutil.rmtree`
instead.
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* Fixing problems with lammps dependencies voropp and latte.
* Always replacing CFLAGS in voropp and specifying voropp+pic dependency in lammps.
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Also fixes instructions for new releases
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conventions (#9962)
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The latest OpenMPI release, v4.0.0, does not build with many GCC
variants. Since this is our default, a lot of users get hit.
Let's wait for some point releases.
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* added 3.8-1 version
* fixed flake8 stuff
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* add v0.20 specific dependency versions, also add cython and py-test as dependencies
* make flake8 happy
* make cython a build-only dependency
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* py-pygresql: new package
* Added dependency on py-setuptools, as the build will use it if present
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* py-psycopg2: new package
* Added dependency on py-setuptools, as the build will use it if present
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