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* Update to latest dot versions and improved installation of Damaris python module damaris4py
* fix for visit dependency typo
* whitespace check
* whitespace check
* fix for style issue
* reviewer suggestions for integrating Python added
* suggestion for boost depends statement added
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* Add new package awscli-v2 and its missing dependency awscrt
* Remove boilerplate comments from awscli-v2 and awscrt packages
* Fix typos in var/spack/repos/builtin/packages/awscli-v2/package.py
* Update var/spack/repos/builtin/packages/awscli-v2/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/awscli-v2/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/awscli-v2/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/awscli-v2/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/awscli-v2/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Address reviewer comments
* Remove py-pip version dependency from var/spack/repos/builtin/packages/awscli-v2/package.py
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Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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* py-isort: needs setuptools build dep before v5
Detected in #40224.
In the past, system setuptools could be picked up when using an external
python, so py-isort@4 would install fine. With the linked PR, pip can
only consider packages that Spack controls from PYTHONPATH, so the issue
of missing py-setuptools showed up.
* py-importlib-metadata: fix lowerbounds on python
* review
* py-isort unconditionally add optional setuptools dep to prevent picking up user package at runtime
* style
* drop optional py-setuptools run dep
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hipsparse@5.6.0 changed hipsparseSpSV_solve() API, but reverted in 5.6.1
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* fix_qgis_build_with_pysip5
* build fails with newer protobuf
* somehow findgdal can figure this out.
* Update var/spack/repos/builtin/packages/qgis/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* fix gdal lib again
* qgis needs QtPositioning provided by qt+location option
* fix FindPyQt5 cmake file
* fix bug
* fix qsci sip issue
* fix bug
* blackify
* improve
* add latest LTR
* add build dep
* revert until bug is fixed
* specify proj version for qgis 3.28
* improve gdal libs search via indicating gdal-config
* make flake happy
* improve deps
* add 3.28.11, improve style
* fix style
* [@spackbot] updating style on behalf of Sinan81
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Co-authored-by: Sinan81 <Sinan@world>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Sinan81 <Sinan81@users.noreply.github.com>
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* falco: new package @1.2.1
* specifying gmake
* Replacing homepage - readthedocs is empty
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Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
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* e4s amd64 gcc ci stack: sync with e4s-23.08
* e4s amd64 oneapi ci stack: sync with e4s-23.08
* e4s ppc64 gcc ci stack: sync with e4s-23.08
* add new ci stack: e4s amd64 gcc w/ external rocm
* add new ci stack: e4s arm gcc ci
* updates
* py-scipy: -fvisibility issue is resolved in 2023.1.0: #39464
* paraview oneapi fails
* comment out pkgs that fail to build on power
* fix arm stack name
* fix cabana +cuda specification
* comment out failing spces
* visit fails build on arm
* comment out slepc arm builds due to make issue
* comment out failing dealii arm builds
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* Fix python versioning issue for py-biom-format
* Update deps according to feedback
* Remove version requirement for py-cython
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Only depend on py-six for versions >=2.1.10
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Add py-future as non-dependency for 2.1.15
* There we are. Everything anyone could ever want
* Missed cython version change
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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* Adding dynaconf module
* Fixing style
* Adding dependency
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* py-dipy: Update version to support python@3.10
py-dipy only adds support to python@3.10 in py-dipy@1.5.0
See #40228
* py-dipy: fix formatting issues
* py-dipy: another formatting fix
* py-dipy: Use depends instead of conflicts
* py-dipy: formatting fix
* py-dipy: Updating for @1.7.0
Added new minimum version requirements for
py-cython
py-numpy
py-scipy
py-h5py
as suggested by @manuelakuhn
(py-nibabel min version unchanged for @1.7.0)
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* py-virtualenv: add 20.22.0
* py-platformdirs: add 3.5.3
* py-filelock: add 3.12.4
* py-distlib: add 0.3.7
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* py-libEnsemble: add v1.0.0
* Add version ranges for deps
* Add comments to variants
* Put when before type
* Fix line lengths
* Re-format
* Update var/spack/repos/builtin/packages/py-libensemble/package.py
Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>
* Update var/spack/repos/builtin/packages/py-libensemble/package.py
Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>
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Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>
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* [add] py-graphql-relay: new package
* py-graphql-relay: Update package.py
Remove leftovers from version 3.2.0:
* archive name in pypi
* dependencies
* [fix] py-graphql-relay: remove constraint on python version; add dependence py-rx because of ModuleNotFoundError during spack test
* [fix] py-graphql-relay: remove py-rx dependence; py-graphql-core: add dependencies for version 2.3.2
* py-graphql-core: Update from review; set build backend, py-poetry for version 3: and py-setuptools for version 2
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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* [add] py-metomi-isodatetime: new recipe, required by py-cylc-flow
* py-metomi-isodatetime: use sources from pypi instead of github
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Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4.7.0 to 4.7.1.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](https://github.com/actions/setup-python/compare/61a6322f88396a6271a6ee3565807d608ecaddd1...65d7f2d534ac1bc67fcd62888c5f4f3d2cb2b236)
---
updated-dependencies:
- dependency-name: actions/setup-python
dependency-type: direct:production
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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Bumps [urllib3](https://github.com/urllib3/urllib3) from 2.0.5 to 2.0.6.
- [Release notes](https://github.com/urllib3/urllib3/releases)
- [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst)
- [Commits](https://github.com/urllib3/urllib3/compare/v2.0.5...2.0.6)
---
updated-dependencies:
- dependency-name: urllib3
dependency-type: direct:production
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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This reverts commit 027409120408eb4d41d8bdd82a13c34b3ac7fea9.
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Two changes in this PR:
1. Register absolute paths in tarballs, which makes it easier
to use them as container image layers, or rootfs in general, outside
of Spack. Spack supports this already on develop.
2. Assemble the tarfile entries "by hand", which has a few advantages:
1. Avoid reading `/etc/passwd`, `/etc/groups`, `/etc/nsswitch.conf`
which `tar.add(dir)` does _for each file it adds_
2. Reduce the number of stat calls per file added by a factor two,
compared to `tar.add`, which should help with slow, shared filesystems
where these calls are expensive
4. Create normalized `TarInfo` entries from the start, instead of letting
Python create them and patching them after the fact
5. Don't recurse into subdirs before processing files, to avoid
keeping nested directories opened. (this changes the tar entry
order slightly, it's like sorting by `(not is_dir, name)`.
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* Add AdditiveFOAM package
* Add AdditiveFOAM build and install
Co-authored-by: kjrstory <kjrstory@gmail.com>
Co-authored-by: Knapp, Gerry <knappgl@ornl.gov>
---------
Co-authored-by: kjrstory <kjrstory@gmail.com>
Co-authored-by: Knapp, Gerry <knappgl@ornl.gov>
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* py-torchgeo: add v0.5.0
* Better documentation of dependency quirks
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* 5.6.0 updates
* Rocm 5.6.0 updates
* Style and audit corrections for 5.6
* Patching smi path for tests.
* Style correction
* 5.6.1 updates
* Updated hip tests for ci build failure
Updated hiprand with the release tag
Taken care the review comment rocsolver
* Adding rocm-smi path for 5.6
* Adding the patch file
* Setting library directory uniform
* gl depends on mesa but it should not be llvm variant
* Fix for the issue 39520 by setting CMAKE_INSTALL_LIBDIR=lib
* i1 muls can sometimes happen after SCEV. They resulted in
ISel failures because we were missing the patterns for them.
* 5.6.0 & 5.6.1 updates for migraphx, miopen-hip, mivisionx
* Revert "5.6.0 & 5.6.1 updates for migraphx, miopen-hip, mivisionx"
This reverts commit f54c9c6c67a4e5a54859f59d6550eb8e542d6c26.
* Revert operator mixup fix
* Splitting compiler-rt-linkage-for-host and operator mixup patch
* Adding missing patch for reverting operator mixup
* 5.6 update for composable-kernel,migraphx,miopen-hip and mivisionx
* Updating rvs, rcd and rccl for 5.6.1. adding comment for llvm patch
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* fix lhapdf package
* [@spackbot] updating style on behalf of joequant
---------
Co-authored-by: joequant <joequant@users.noreply.github.com>
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* Implemented +sycl for slate
* style
* style
* add slate +sycl to ci
* slate +sycl: explicitly specify +mpi
* comment out slate+sycl+mpi in e4s oneapi stack
* removing requirement of intel-oneapi-mpi
* Added slate+sycl to e4s oneapi stack
* Removing obsolete comment
---------
Co-authored-by: eugeneswalker <eugenesunsetwalker@gmail.com>
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Currently buildcaches are forward incompatible in an annoying way: spack
errors out when trying to use them.
With this change, you just get a warning.
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importlib_metadata 4.11.4 fixes some nasty issues with
`metadata.entry_points(...)`, so ensure we have those bugfixes.
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* SEACAS: Update package.py to handle new SEACAS project name
The base project name for the SEACAS project has changed from
"SEACASProj" to "SEACAS" as of @2022-10-14, so the package
needed to be updated to use the new project name when needed.
The refactor also changes several:
"-DSome_CMAKE_Option:BOOL=ON"
to
define("Some_CMAKE_Option", True)
* CGNS: If fortran not enabled, do not specify parallel fortran compiler
* Update package formatting as suggested by black
* Accept suggested change
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Fix issue in configure_args which resulted in duplicate "--with-ldflags" arguments (with different values) being passed to configure. And extended the fix to similar arguments.
Also, repeated some flags to "--with-libs" to "--with-ldflags" as when the flags were only in "--with-libs", they did not seem to be picked up everywhere. I suspect this is a bug in the configure script, but adding to both locations seems to solve it and should not have any adverse effects.
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
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Co-authored-by: Sinan81 <Sinan@world>
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* perl-devel-checklib: adding new package perl-devel-checklib
* perl-dbd-mysql: adding new version 4.050 and a new build dep
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