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2015-10-15spack: split spack_root from prefixBen Boeckel1-6/+8
A foundation for allowing runtime configuring of the prefix.
2015-10-15netcdf: link to MPIBen Boeckel2-15/+39
Newer GNU linker refuses to use transitive linking; if netcdf calls MPI_Allreduce, it must link the providing library directly. Also switched to CMake because I don't know autoconf well enough to know how to put MPI stuff into it.
2015-10-13Make sure to generate output for dependencies as if they were separate tests:Peter Scheibel1-20/+51
the original intent was to generate output as if each package was a unit test, but I noticed that I was only generating test output for top-level packages.
2015-10-13Add spec YAML format to test output.Peter Scheibel1-8/+11
2015-10-13Add forgotten file from previous commit.Todd Gamblin1-0/+5
2015-10-12Don't create test output for any package that was already installed.Peter Scheibel1-11/+11
2015-10-121. Added Junit XML formatPeter Scheibel1-16/+34
2. Specify output to a file vs. a directory 3. Use [1] and [2] to write an XML file tracking success of package installs in Junit XML format
2015-10-12Adding command testinstall. See "spack testinstall -h" for documentation.Peter Scheibel1-0/+129
Still need to add output formatting (in a commonly parse-able format like Junit or TAP). May want to adjust how the build log is accessed in case of a build failure.
2015-10-12Fix bug in colify color handling.Todd Gamblin1-14/+4
2015-10-08bug fix for github issue 122Gregory L. Lee1-1/+3
2015-10-08update warning message for spack -k.Todd Gamblin1-1/+1
- warning said it didn't do checksums; really does.
2015-10-08Merge branch 'features/libxcb-1.11.1' into developTodd Gamblin1-1/+1
2015-10-06gcc : fixed spec fileMassimiliano Culpo1-3/+2
2015-10-06spec file : everything is dumped, only link rule is modifiedMassimiliano Culpo1-9/+11
2015-10-06GCC : added variants for libelf, binutils, isl. gcc@5.0: still has issuesMassimiliano Culpo1-19/+38
2015-10-05added libxcb version 1.11.1Gregory L. Lee1-1/+1
2015-10-01Added current version 3.2 of libffi version 3.1 has a bug that interferes ↵Mario Melara1-3/+4
with glib
2015-09-29Merge pull request #118 from scalability-llnl/features/scrTodd Gamblin1-2/+4
update scr to 1.1.8
2015-09-29update scr to 1.1.8Adam Moody1-2/+4
2015-09-27an ordered database testGregory Becker2-1/+106
2015-09-27Merge pull request #116 from mamelara/developTodd Gamblin4-0/+78
Added samtools bioinformatics software
2015-09-27Remove enabled variants from install prefix.Todd Gamblin1-6/+1
- these make the prefix too long in many cases. - users can figure out which install is which by querying.
2015-09-27Remove special characters (@, %, +, ~, etc) from stage nameTodd Gamblin1-2/+9
2015-09-24Adding bowtie2 package along with patchMario Melara2-0/+40
2015-09-23Added samtools bioinformatics softwareMario Melara2-0/+38
2015-09-23Merge pull request #102 from RasmusWL/features/fishTodd Gamblin1-0/+18
Add fish (shell) package
2015-09-23Merge pull request #106 from justintoo/add-package-doxygenTodd Gamblin1-0/+25
(Package) Add Doxygen (v1.8.10)
2015-09-23Merge pull request #110 from scalability-llnl/features/boostupdateTodd Gamblin1-0/+4
update boost package for new releases
2015-09-23Merge pull request #111 from scalability-llnl/features/protobufTodd Gamblin1-0/+16
add protobuf package
2015-09-23Merge pull request #112 from scalability-llnl/features/glogTodd Gamblin1-0/+15
add glog package
2015-09-23Merge pull request #113 from scalability-llnl/features/gflagsTodd Gamblin1-0/+21
add gflags package
2015-09-23Merge pull request #114 from scalability-llnl/features/snappyTodd Gamblin2-0/+44
Features/snappy
2015-09-23Merge pull request #115 from scalability-llnl/features/lmdbTodd Gamblin1-0/+39
add lmdb package
2015-09-22add lmdb packageAdam Moody1-0/+39
2015-09-22add leveldb packageAdam Moody1-0/+29
2015-09-21add snappy packageAdam Moody1-0/+15
2015-09-21add gflags packageAdam Moody1-0/+21
2015-09-21add glog packageAdam Moody1-0/+15
2015-09-21add protobuf packageAdam Moody1-0/+16
2015-09-18Add ref counting to database. This does not handle removal properly yet.Todd Gamblin6-55/+183
2015-09-17Allow custom timeout for database locking.Todd Gamblin1-4/+6
2015-09-17Simplify lock context managers.Todd Gamblin10-43/+49
2015-09-17Several changes to DB implementation.Todd Gamblin6-140/+221
1. Database stores a file version, so we can add to it in the future. 2. Database indexed by hashes and not numerical indexes. 3. Specs built by database have consistent hashes and it's checked. 4. minor naming and whitespace changes.
2015-09-15Added spack fsck and re-read from glob if the database file does not exist. ↵Gregory Becker2-4/+57
Allows older versions to smoothly upgrade to the database.
2015-09-11(Package) Add Doxygen (v1.8.10)Justin Too1-0/+25
2015-09-03Add fish (shell) packageRasmus Wriedt Larsen1-0/+18
2015-09-03Added conservative locking to the spack commands that access the database at ↵Gregory Becker8-86/+104
_index
2015-09-01update boostAdam Moody1-0/+4
2015-08-31Removed incorrect stage removal code from cleanup() in do_install()Gregory Becker1-8/+0
2015-08-31Fixed several issues from code reviewGregory Becker2-82/+184
Most importantly wrote the Lock, Read_Lock_Instance, and Write_Lock_Instance classes in lock.py Updated the locking in database.py TODO: Lock on larger areas
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