summaryrefslogtreecommitdiff
AgeCommit message (Collapse)AuthorFilesLines
2018-01-02py-lrudict: a LRU-based cache dictionary (#6734)Feiyi Wang1-0/+38
* add py-lrudict * style fix * style fix: add blank lines
2018-01-02py-scandir: a better directory iterator, backport to 2.7 (#6739)Feiyi Wang1-0/+37
2018-01-02gatk: boilerplate cleanup (#6744)Levi Baber1-15/+0
2018-01-02add OctavePackage (#6746)Denis Davydov9-49/+88
* add OctavePackage 1. remove import CudaPackage which is not needed anymore 2. mention CudaPackage and OctavePackage in packaging guide 3. adjust OctavePackageTemplate 4. add clue file for Octave build 5. sanity check on self.prefix * use setup_environment
2018-01-02py-xattr: a python interface to access extended file attribute (#6747)Feiyi Wang1-0/+38
* py-xattr: a python interface to access extended file attribute * py-xattr: style fix
2018-01-02Lbann update (#6751)Brian Van Essen1-2/+59
* Added a package for the MDAnalysis toolkit. * Updated the LBANN recipe to use the revised cmake environment being rolled out. * Flake8 errors
2018-01-02likwid: add stable 4.3.0 (#6761)Denis Davydov1-3/+2
2018-01-02mesa: disable binutils on macOS (#6763)Denis Davydov1-2/+2
2018-01-02jags: lapack fix (#6764)Levi Baber1-2/+4
* jags: fixing openblas thows a lapack error when compiling. atlas works. other lapack providers may work. also adding tags * changing blas/lapack reference * removing openblas conflict * jags: whitespace cleanup for flake8
2018-01-02Esmf fixes for Cray, OSX and mpich (#6768)Milton Woods2-3/+31
* esmf: put .mod files in the spack compiler search path * esmf: allow building with Cray mpi * esmf: create run-path dependent libraries on osx * esmf: link fortran interface libraries when building with mpich
2018-01-02Adding option to build Nalu with Hypre support. (#6782)Jon Rood1-1/+10
2018-01-02perl-xml-libxml: adding perl module (#6783)peetsv1-0/+35
* perl-xml-libxml: adding perl module * line length change
2018-01-02create perl-file-which package (#6800)Sinan1-0/+34
* create perl-file-which package * trivial edits for package.py so trivial edits for package.py so that flake8 will not complain
2018-01-02Updated 'nginx' from v1.12.0 to v1.13.8. (#6810)stefanosoffia1-0/+1
This fixes build issues with most recent gcc versions. See issue #6252.
2018-01-02py-pyani: Create new package (#6811)Eric1-0/+55
2018-01-02MinCED: Create new package (#6815)Eric1-0/+44
2018-01-02adding specific version url for augustus 3.3 due to old folder structure (#6813)Levi Baber1-1/+2
2018-01-02Tioga package: Explicitly list MPI compilers for Cmake (#6741)Jon Rood1-1/+4
2018-01-02paraview package: Explicitly specify MPI compilers in Cmake (#6738)Jon Rood1-1/+4
2018-01-02new package: Pfunit: unit testing framework for Fortran (#6795)Milton Woods1-0/+97
2018-01-02new package: DIAMOND (#6793)Eric1-0/+35
2018-01-02new package: tantan (#6792)Eric1-0/+38
2018-01-02Cython only needed for develop version of mpi4py (#6780)Adam J. Stewart1-1/+1
2018-01-02Add more unit tests for spack clean command (#6777)Adam J. Stewart1-3/+5
2018-01-02new package: py-rseqc (#6773)Eric1-0/+42
2018-01-02package py-biopython: remove py-mx dependency (#6772)Eric1-1/+0
2018-01-02package r-rcurl: boilerplate cleanup (#6771)Eric1-15/+0
2018-01-02bamtools: Add version 2.5.1 (#6770)Eric1-0/+1
2017-12-30Add unit tests for spack help command (#6779)Adam J. Stewart1-0/+75
* Add unit tests for spack help command * Work around issue with using `spack help` twice in tests
2017-12-30Update to the latest version of argparse (#6786)Adam J. Stewart1-53/+36
* Update to the latest version of argparse * Re-add colified logic
2017-12-30Update to distro 1.0.4 (#6788)Adam J. Stewart1-24/+39
* Update to the latest version of distro * Update distro to 1.0.4
2017-12-30Add: lines-are-beautiful (#6784)Axel Huebl1-0/+49
Adds the C++ File API library "lines-are-beautiful" for the reMarkable e-ink tablet.
2017-12-22QMCPACK package: update blas/lapack detection (#6753)Nichols A. Romero2-37/+125
* Fix detection of blas and lapack: provide libraries/includes as arguments to CMake rather than using CMake's auto-detection. This includes a patch to QMCPACK's CMake files to refer to Spack-built blas/lapack implementations. This also includes special-case logic for the intel-mkl implementation of blas/lapack * Break up unit tests and short tests. Only hard failure if the unit tests fail, if short tests fail issue a warning only. * Add QMCPACK 3.3.0, get rid of 3.0.0
2017-12-22Add more unit tests for spack list command (#6750)Adam J. Stewart1-2/+32
2017-12-22spack mirror remove: fix no-update error (#6559)Massimiliano Culpo1-9/+1
Fixes #4573 "spack mirror remove" was not actually removing mirrors from the configuration.
2017-12-22dealii: support 64bit BLAS (#6758)Denis Davydov1-1/+9
2017-12-22clang,flang: update CC, CXX environment in installation module (#6737)Andrey Prokopenko2-0/+9
2017-12-22gmap-gsnap: adding version 2014_12_28 (#6720)peetsv1-0/+1
2017-12-21Fix python3 compatibility bug in spack edit command (#6748)Adam J. Stewart1-2/+2
In Python 2, filter() returns a list, but in Python 3, filter() returns an iterator, and iterators have no length.
2017-12-21separate stdout and stderr for module loading (#6713)becker331-1/+4
2017-12-20Feature/fasttree (#6227)Levi Baber1-0/+50
* fasttree: new package * fasttree: better version handling * fixing line length for flake8
2017-12-20binary caching: handle files misidentified as needing relocation (#6679)Patrick Gartung3-25/+54
* Only specify a file as needing relocation if it contains the spack root as a text string (this constraint also applies to binaries) * Don't fail if there is an error retrieving RPATH information from a binary (even if it is specified as requiring relocation)
2017-12-20Compiler flag handlers (#6415)becker3312-1320/+372
This adds the ability for packages to apply compiler flags in one of three ways: by injecting them into the compiler wrapper calls (the default in this PR and previously the only automated choice); exporting environment variable definitions for variables with corresponding names (e.g. CPPFLAGS=...); providing them as arguments to the build system (e.g. configure). When applying compiler flags using build system arguments, a package must implement the 'flags_to_build_system_args" function. This is provided for CMake and autotools packages, so for packages which subclass those build systems, they need only update their flag handler method specify which compiler flags should be specified as arguments to the build system. Convenience methods are provided to specify that all flags be applied in one of the 3 available ways, so a custom implementation is only required if more than one method of applying compiler flags is needed. This also removes redundant build system definitions from tutorial examples
2017-12-20ENH: better handling of mpich for openfoam packagesMark Olesen3-69/+74
- define MPICH_SKIP_MPICXX, link libmpich instead of libmpi (as per disussion in PR #4990) ENH: more flexible editing/patching of openfoam env files CONFIG: comment out requirement for openmpi+thread_multiple - was originally slated for the 1712 release and beyond, but there are reportedly unstable version/network combinations. Leave as comment for future reference, since it may be arise again. STYLE: renamed openfoam-site.patch as 1706-site.patch (and reformatted) - to preserve against impending changes in the layout of config.{csh,sh}/settings
2017-12-20ENH: improved openfoam module creation (issue #4942)Mark Olesen3-19/+146
- post-install module settings for openfoam-com and foam-extend.
2017-12-20picard: Add version 2.17.0 (#6729)Eric1-0/+1
2017-12-20octave: add optim and struct packages (#6733)Denis Davydov2-0/+98
2017-12-19sqlite package: apply B0 patch to additional versions (#6728)Gregory Lee1-1/+1
2017-12-19slepc: add 3.8.2 (#6724)Denis Davydov1-0/+1
2017-12-19intel-tbb: add 2018.2 (#6725)Denis Davydov1-0/+2