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2016-09-21Adds all available CrayPE CPU targets to platform by default. (#1745)Matt Belhorn1-42/+67
2016-09-21Merge branch 'efischer/160914-FixBinutils226Question' of ↵Todd Gamblin3-4/+5
git://github.com/citibeth/spack into bugfix/efischer-160914-FixBinutils226Question
2016-09-21Close #1683 Apply ADIOS 1.10.0 Patch (HDF5 1.10+) (#1699)Axel Huebl2-9/+42
* Close #1683 Apply ADIOS 1.10.0 Patch Also correct version dependencies and comments. * Clean Up ADIOS - add develop - simplify HDF5 options (parallel only) - remove optional netCDF (not fully v4)
2016-09-21cp2k : added dependencies (#1724)Massimiliano Culpo4-7/+157
* wannier90 : added package (#24) * wannier90 : added package * cp2k : added dependency on wannier90 * elpa : updated package, added cp2k dependency (#26) Conflicts: var/spack/repos/builtin/packages/elpa/package.py
2016-09-21Set JAVA_HOME on module load and on dependent installs. (#1716)Alfredo Adolfo Gimenez2-0/+7
* Set JAVA_HOME on module load and on dependent installs. * Include environment setup from dependencies in dependee module (#1714)
2016-09-21grackle : added package (#1725)Massimiliano Culpo2-0/+160
Modifications : * grackle : added package * grackle : added version 2.2
2016-09-21Wrap yt package (#1751)Erik Schnetter1-0/+78
yt is a python package for analyzing and visualizing volumetric, multi-resolution data from astrophysical simulations, radio telescopes, and a burgeoning interdisciplinary community.
2016-09-21Qt library: added variant to enable/disable compilation of examples (#1763)Sergey Kosukhin1-1/+7
2016-09-20Compiling python with gnu c++ on macos fails with toolboxglue enabled.Patrick Gartung1-0/+2
2016-09-20fix MacOs class for Sierra (#1811)Denis Davydov1-1/+1
2016-09-20added STAT release 3.0.0Gregory L. Lee1-2/+2
2016-09-20Julia: Add version 0.5.0 (#1809)Erik Schnetter1-2/+3
2016-09-20Remove url_for_version as it breaks spack info (#1503)Adam J. Stewart1-6/+0
2016-09-20Update Package: Git-LFS (#1769)Joseph Ciurej3-27/+109
* Fixed a few small bugs in the 'git-lfs' install script. * Fixed a bug in the '(go|go-bootstrap)@1.4.2+test' install scripts. * Fixing a minor style issue in the 'git-lfs' install script.
2016-09-20PETSc: Explicitly point to cpp when configuring (#1807)Erik Schnetter1-0/+4
I encountered an HPC system where PETSc's configure stage does not find a valid `cpp` (C preprocessor). Explicitly pointing to Spack's `cpp` wrapper resolves the problem.
2016-09-20Remove lingering boilerplate FIXMEs (#1756)Adam J. Stewart5-9/+8
2016-09-20fix : failing unit tests due to missing `self` (#1806)Massimiliano Culpo1-2/+2
2016-09-20Update Package: Metis (#1783)Joseph Ciurej2-84/+91
* Fixed a bug that was causing post-install METIS tests to fail. * Improved the patching procedure used in the 'metis' install script. * Enabled patch skipping for the 'metis' and 'parmetis' packages. * Fixed some minor style issues in the 'parmetis' package. * Improved the 'metis' test fix and added 'run_tests' support.
2016-09-20Add UberFTP utility (#1780)Robert D. French1-0/+44
2016-09-20dealii: add 8.4.2 (#1782)Denis Davydov1-5/+6
2016-09-20Add Python support to gdb. (#1790)Bruno Turcksin1-1/+10
2016-09-20Update Package : Zoltan (#1793)Joseph Ciurej1-44/+71
* Refactored and reorganized the 'zoltan' install script. * Fixed a few bugs with the '+mpi' and '+fortan' variants of 'zoltan'. * Reintroduced and improved the '+shared' variant for the 'zoltan' package. * Improved compatibility with different MPI providers for 'zoltan'.
2016-09-20Fix format string (in class RemoveFailedError) (#1803)Eric1-1/+1
2016-09-20samtools could not find the ncurses library (#1785)Tom Merrick1-1/+2
2016-09-20lmod : added support for the creation of hierarchical lua module files (#1723)Massimiliano Culpo10-149/+560
Includes : - treatment of a generic hierarchy (i.e. lapack + mpi + compiler) - possibility to specify which compilers are to be considered Core - correct treatment of the 'family' directive - unit tests for most new features
2016-09-20Allow multi-user installations (#1804)Eric1-1/+1
When re-using previously downloaded tarballs, spack copies from `var/spack/stage/PACKAGE-VERSION-HASH/downloaded_file` to `var/spack/cache/PACKAGE/downloaded_file`. This fails if the source is owned by a different user (`shutil.copy` tries to retain all meta data including file ownership). Change to a non-meta-data copy function (`shutil.copyfile`).
2016-09-20Update Julia to 0.4.7 (#1805)Erik Schnetter1-1/+2
2016-09-20Make VisIt build again (#1762)Erik Schnetter1-1/+4
- add new version 2.10.3 - explicitly require hdf5 variant ~mpi, since we don't know how to build with mpicc - explicitly disable glew since it may not be installed
2016-09-20Work around cmake problems in VTK (#1761)Erik Schnetter2-0/+23
The cmake scripts can't handle the semicolons in gcc's version output. Filter them out before detecting the version.
2016-09-20Tighten HDF5 version requirements for Silo (#1760)Erik Schnetter1-1/+2
2016-09-20Make cmake @2.8 build again (#1759)Erik Schnetter1-5/+7
2016-09-20Update hwloc to 1.11.4 (#1752)Erik Schnetter1-0/+1
2016-09-20Declare py-beautifulsoup4's dependency on py-setuptools (#1748)Erik Schnetter1-0/+2
2016-09-20Update curl to 7.50.3 (#1747)Erik Schnetter1-0/+2
* Update curl to 7.50.2 * Update curl to 7.50.3
2016-09-20Update OpenMPI to 2.0.1 (#1721)Erik Schnetter1-0/+1
2016-09-20Update OpenBLAS to 0.2.19 (#1702)Erik Schnetter1-0/+1
2016-09-20Reorder versions in openssl (#1601)Erik Schnetter1-7/+7
2016-09-20Update mbedtls to 2.3.0 (#1600)Erik Schnetter1-0/+1
2016-09-20Update cereal to 1.2.1 (#1599)Erik Schnetter1-0/+1
2016-09-20Update binutils to 2.27 (#1598)Erik Schnetter1-0/+1
2016-09-15Fix location -p and -P (#1776)Michael Kuhn1-3/+2
2016-09-15Update mvapich2 to 2.2 (#1775)Michael Kuhn1-7/+6
2016-09-15Make libstdc++-detection work on Darwin (#1778)Erik Schnetter1-2/+2
2016-09-15[RtM] Added py-proj/package.py (RtM = Ready to Merge) (#717)Elizabeth Fischer1-0/+52
* Added py-proj package * Added bug-fix patched version to the package. * Removed dependency of py-proj on proj. * py-proj: Added missing dependency * py-proj: Removed versions from forked repos, now that necessary bug fixes have been merged into the main repo. * Update package.py Added a blank line that Travis wanted. * 1. Added copyright 2. Used setup_py 3. Added type='build' for dependencies.
2016-09-14Put back full-length URL.Elizabeth Fischer1-2/+1
2016-09-14Bug fix capturing which packages work with which binutils.Elizabeth Fischer2-2/+2
2016-09-14Resolved issues of py-pillow, py-scipy and binutils dependencies. Resolves ↵Elizabeth Fischer3-5/+7
#1506 py-pillow: Remove version dependency on binutils@2.25. In tests, it works just fine with binutils@2.26. Fixed flake8 issues.
2016-09-09Update netlib-lapack to 3.6.1 (#1597)Erik Schnetter1-0/+1
2016-09-09Add libiconv dependency for git (#1468)Erik Schnetter1-5/+7
Also remove "--without-pcre" flag that git does not understand any more.
2016-09-09Qthreads: Switch back to using tarball to get released version (#1739)Erik Schnetter2-26/+2
* Qthreads: Switch back to using tarball for download * Don't require autotools any more * Re-enable autotools * Remove autotools again * Use .tar.bz tarball; remove outdated code
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