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* Isolate bootstrap configuration from user configuration
* Search for build dependencies automatically if bootstrapping from sources
The bootstrapping logic will search for build dependencies
automatically if bootstrapping anything form sources. Any
external spec, if found, is written in a scope that is specific
to bootstrapping.
* Don't clean the bootstrap store with "spack clean -a"
* Copy bootstrap.yaml and config.yaml in the bootstrap area
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Reverting from CMake to Make install caused
`-install_path=/usr/local/lib/libzstd.1.dylib` to be hardcoded into the
zstd. Now we explicitly pass the PREFIX into the build command so that
the correct spack install path is saved.
Fixes #26438 and also the ROOT install issue I had :)
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- [x] Our wrapper error messages are sometimes hard to differentiate from other build
output, so prefix all errors from `die()` with '[spack cc] ERROR:'
- [x] The error we raise when running, say, `fc` without a Fortran compiler was not
clear enough. Clarify the message and the comment.
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This converts everything in cc to POSIX sh, except for the parts currently
handled with bash arrays. Tests are still passing.
This version tries to be as straightforward as possible. Specifically, most conversions
are kept simple -- convert ifs to ifs, handle indirect expansion the way we do in
`setup-env.sh`, only mess with the logic in `cc`, and don't mess with the python code at
all.
The big refactor is for arrays. We can't rely on bash's nice arrays and be ignorant of
separators anymore. So:
1. To avoid complicated separator logic, there are three types of lists. They are:
* `$lsep`-separated lists, which end with `_list`. `lsep` is customizable, but we
picked `^G` (alarm bell) for `$lsep` because it's ASCII and it's unlikely that it
would actually appear in any arguments. If we need to get fancier (and I will lose
faith in the world if we do) then we could consider XON or XOFF.
* `:`-separated directory lists, which end with `_dirs`, `_DIRS`, `PATH`, or `PATHS`
* Whitespace-separated lists (like flags), which can have any other name.
Whitespace and colon-separated lists come with the territory with PATHs from env
vars and lists of flags. `^G` separated lists are what we use for most internal
variables, b/c it's more likely to work.
2. To avoid subshells, use a bunch of functions that do dirty `eval` stuff instead. This
adds 3 functions to deal with lists:
* `append LISTNAME ELEMENT [SEP]` will put `ELEMENT` at the end of the list called
`LISTNAME`. You can optionally say what separator you expect to use. Note that we
are taking advantage of everything being global and passing lists by name.
* `prepend LISTNAME ELEMENT [SEP]` like append, but puts `ELEMENT` at the start of
`LISTNAME`
* `extend LISTNAME1 LISTNAME2 [PREFIX]` appends everything in LISTNAME2 to
LISTNAME1, and optionally prepends `PREFIX` to every element (this is useful for
things like `-I`, `-isystem `, etc.
* `preextend LISTNAME1 LISTNAME2 [PREFIX]` prepends everything in LISTNAME2 to
LISTNAME1 in order, and optionally prepends `PREFIX` to every element.
The routines determine the separator for each argument by its name, so we don't have to
pass around separators everywhere. Amazingly, as long as you do not expand variables'
values within an `eval` environment, you can do all this and still preserve quoting.
When iterating over lists, the user of this API still has to set and unset `IFS`
properly.
We ended up having to ignore shellcheck SC2034 (unused variable), because using evals
all over the place means that shellcheck doesn't notice that our list variables are
actually used.
So far this is looking pretty good. I took the most complex unit test I could find
(which runs a sample link line) and ran the same command line 200 times in a shell
script. Times are roughly as follows:
For this invocation:
```console
$ bash -c 'time (for i in `seq 1 200`; do ~/test_cc.sh > /dev/null; done)'
```
I get the following performance numbers (the listed shells are what I put in `cc`'s
shebang):
**Original**
* Old version of `cc` with arrays and `bash v3.2.57` (macOS builtin): `4.462s` (`.022s` / call)
* Old version of `cc` with arrays and `bash v5.1.8` (Homebrew): `3.267s` (`.016s` / call)
**Using many subshells (#26408)**
* with `bash v3.2.57`: `25.302s` (`.127s` / call)
* with `bash v5.1.8`: `27.801s` (`.139s` / call)
* with `dash`: `15.302s` (`.077s` / call)
This version didn't seem to work with zsh.
**This PR (no subshells)**
* with `bash v3.2.57`: `4.973s` (`.025s` / call)
* with `bash v5.1.8`: `4.984s` (`.025s` / call)
* with `zsh`: `2.995s` (`.015s` / call)
* with `dash`: `1.890s` (`.0095s` / call)
Dash, with the new posix design, is easily the winner.
So there are several interesting things to note here:
1. Running the posix version in `bash` is slower than using `bash` arrays. That is to be
expected because it's doing a bunch of string processing where it likely did not have
to before, at least in `bash`.
2. `zsh`, at least on macOS, is significantly faster than the ancient `bash` they ship
with the system. Using `zsh` with the new version also makes the posix wrappers
faster than `develop`. So it's worth preferring `zsh` if we have it. I suppose we
should also try this with newer `bash` on Linux.
3. `bash v5.1.8` seems to be significantly faster than the old system `bash v3.2.57` for
arrays. For straight POSIX stuff, it's a little slower. It did not seem to matter
whether `--posix` was used.
4. `dash` is way faster than `bash` or `zsh`, so the real payoff just comes from being
able to use it. I am not sure if that is mostly startup time, but it's significant.
`dash` is ~2.4x faster than the original `bash` with arrays.
So, doing a lot of string stuff is slower than arrays, but converting to posix seems
worth it to be able to exploit `dash`.
- [x] Convert all but array-related portions to sh
- [x] Fix basic shellcheck issues.
- [x] Convert arrays to use a few convenience functions: `append` and `extend`
- [x] Get `cc` tests passing.
- [x] Add `cc` tests where needed passing.
- [x] Benchmarking.
Co-authored-by: Tom Scogland <scogland1@llnl.gov>
Co-authored-by: Danny McClanahan <1305167+cosmicexplorer@users.noreply.github.com>
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* Add version 0.12.1
* Add variant to build with C++11 standard
build with c++11 standard requires boost threads, and needs explicit setting of
CMAKE_CXX_STANDARD
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* intel-tbb: install pkgconfig file
* intel-tbb: install pkgconfig file when @:2021.2.0
* intel-tbb: add blank line
* intel-tbb: fix library name to refer
* intel-tbb: fix library name to refer again
* intel-tbb: use self.prefix.lib.pkgconfig
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Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov>
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* esys-particle: add new package esys-particle
* esys-particle: requested changes
* esys-particle: placating isort
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Apply to all known affected versions (10.1.0 to 10.3.0 and 11.1.0)
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* Add new pythia8 variants
Add proper description to the existing ones
* Flake-8
* Flake-8
* Style
* Fix Pythia8 recipe
* Fix typo in variant description
* Update package.py
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remove sysctl.h which is not used by the build
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1) forward `+shared` to re2
2) add `cxxstd` variant
3) use "more idiomatic" way of setting CMake options
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From the gnupg.org website:
> GnuPG 1.4 is the old, single binary version which still support the
> unsafe PGP-2 keys. However, it lacks many modern features and will
> receive only important updates.
I'm starting to appreciate gpg1 more, because it is relocatable (gng2
has hard-coded paths to gpg-agent and other tools) and it does not
require gpg-agent at all.
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(#26463)
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freebayes needs the tools of the vcflib it includes to run tests
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* graph500: added option -fcommon for gcc@10.2:, otherwise failed to build with "multiple definition of `column'"
* graph500: moved setting cflag to flag_handler
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Work around issues in older hdf5 build and overzealous build flags:
```
>> 1420 /var/folders/j4/fznvdyhx4875h6fhkqjn2kdr4jvyqd/T/9te/spack-stage/spack-stage-hdf5-1.10.4-feyl6tz6hpx5kl7m33avpuacwje2ubul/spack-src/src/H5Odeprec.c:141:8: error: implicit decl
aration of function 'H5CX_set_apl' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
```
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The older patch does not apply so the build ends up failing:
```
1539 In file included from /private/var/folders/fy/x2xtwh1n7fn0_0q2kk29xkv9vvmbqb/T/s3j/spack-stage/spack-stage-python-3.8.11
-6jyb6sxztfs6fw26xdbc3ktmbtut3ypr/spack-src/Modules/_tkinter.c:48:
>> 1540 /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/tk.h:86:11: f
atal error: 'X11/Xlib.h' file not found
1541 # include <X11/Xlib.h>
1542 ^~~~~~~~~~~~
1543 1 error generated.
```
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Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
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* Update archspec
* Add ppc64le to docker images
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