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We need a newer version of HDF5 and dropped the boost dependency.
Modernize the test variant to the spack test functionality.
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* add package py-cartopy
Change-Id: Ifbe541e852921c384a381594a2c1110814556311
* fix comments and flake8
Change-Id: I8d5e994580e8252e00654e68ad79d74e06089939
* remove pip dependency... not sure why added in the first place
Change-Id: Ie2a788887dac30778cc43931a0732980a347514d
* move build, link, run to default dependencies
Change-Id: I1ec0cb7dc4a697c4ca9e68a0cc0d8694cc21c100
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Fixes #7885
#7193 added the patches_to_apply function to collect patches which are then
applied in Package.do_patch. However this only collects patches that are
associated with the Package object and does not include Spec-related patches
(which are applied by dependents, added in #5476).
Spec.patches already collects patches from the package as well as those applied
by dependents, so the Package.patches_to_apply function isn't necessary. All
uses of Package.patches_to_apply are replaced with Package.spec.patches.
This also updates Package.content_hash to require the associated spec to be
concrete: Spec.patches is only set after concretization. Before this PR, it was
possible for Package.content_hash to be valid before concretizing the associated
Spec if all patches were associated with the Package (vs. being applied by
dependents). This behavior was unreliable though so the change is unlikely to
be disruptive.
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* Add new package: davix
* Add list_url
* Remove extra spaces, add list_depth and specify dependency type
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Provides a patch for the fix in
https://github.com/ornladios/ADIOS/pull/182
Installed ADIOS MPI-enabled libraries are with that able to also
perform serial I/O without the need to start the whole app via
`mpiexec`.
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* Add new package: rngstreams
* Remove unnecessary list_url
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Add the new type 'test` to the `googletest` dependency
of xsimd.
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* Add new package: prng
* Add missing dependencies and use force_autoreconf option
* Add dependency types
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Fix the maximum accepted SZ version for the latest ADIOS release.
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the type 'test' exists now :-)
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Forgot to bump this package with the library release.
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* trilinos: add more package conflicts
This was done by putting in required lib dependencies from each
package's `cmake/Dependencies.cmake`.
* trilinos: added few more trilinos packages
* trilinos: hiccup fix
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* r-splitstackshape: Create new package.
* r-splitstackshape: Add version constraints.
* add list_url and change dependency type.
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* add 1.4.13.4 for SZ
* undo spack link (change llnl/spack to spack/spack) and change .zip to .tar.gz
* revise package.py for SZ 1.4.13.4 based on Adam's comments.
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* py-mpmath: added version 1.0.0
* Fixed checksum for version 0.19
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py-numpy: added version 1.14.3
py-scipy: added version 1.1.0
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Fixes #8345
Spack environment modifications are applied before modules are loaded; this
includes settings to CC, FC, F77, and CXX, which point to the Spack compiler
wrappers. If the loaded modules set CC, this overrides the Spack compiler
wrappers. This PR adds a context manager to preserve the values of CC etc. that
are set by Spack: any effects on the CC, FC, F77, and CXX variables from modules
are undone and their original values are restored.
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version('1.4.1.2', '38c7d33210155e5796b16d536d1b5cfe')
Signed-off-by: Daniel Topa <dantopa@lanl.gov>
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* adding partially completed recipe for phast. will need clapack as dependency
* try to install phast
* seems to still need CLAPCK
* using CLAPACK instead
* phast: updated
* fixed flake8 error
* phast cannot build with clapack built with external blas?
* phast: depend on clapack built without external blas
* fixed flake8 errors
* phast: updated build_directory
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* clapack: new package
* clapack: updated edit phase and fixed flake9 errors
* clapack: added description for variant
* clapack: updated
* removed .package.py.swo
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* pybind11: test support
Add a test functionality to pybind11.
* CMake: test also on "make check"
Some projects use non-CTest manual targets for tests.
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* Less sensitive error detection in build logs
* Fix test_log_parser unit test
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Line numbers were reported as zero-indexed, but we need to adjust.
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* Fix digest for abyss@1.5.2
The digest value for v1.5.2 appears to have changed. This value works
for me, today.
The existing value v2.0.2 works as is.
* Use "download" URL for ABYSS
Following the suggestion of the project team, switch to using the
release tarballs from the "download" URL instead of the automagically
generated ones at the "archive" URL.
Converstation here: https://github.com/bcgsc/abyss/issues/232
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fixes #8083
External specs are supposed to be installed already, so there's no need
to try to download a tarball for them.
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* make provision to install version 6.4.0beta.2
* drop flang.patch for the newer version per junghans
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Also add an nls variant for gettext support.
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* Adding nektar++ package
* - -> ~ and add explicit conflict with metis
* Add messages explaing nektar's conflicts
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* extend Prefix class with join() member to support dynamic directories
* add more tests for Prefix.join()
* more tests for Prefix.join()
* add docstring
* add example to docstring of Prefix class
* cleanup Prefix.join() tests
* use Prefix.join() in Packaging Guide
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(#8337)
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The URL that we were using for pigz only provides the current
version. When the author released v2.4 the package became
uninstallable (unless you have the tarball cached).
It turns out that their are tarballs of the tagged source tree
available on GitHub and they're sufficient to build things (no
additional bits needed).
This commit switches the URL to the GitHub archive URL.
Sadly, this changes the v2.3.4 digest, but that version was no longer
available/install-able anyway, so "net-net we're still in positive
territory".
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