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2021-01-25es-shell: add missing dependency on YACC (#21234)darmac1-0/+1
2021-01-25pugixml: add v1.11.4 (#21224)Vicente Bolea1-0/+1
2021-01-25py-pythonsollya: new package (#21241)iarspider1-0/+25
2021-01-25sollya: new package at v7.0 (#21240)iarspider1-0/+33
2021-01-25py-pygeos: add v0.9 (#21243)Adam J. Stewart1-0/+2
2021-01-25petsc: forward variant +int64 to parmetis (#21245)lpoirel1-1/+2
2021-01-25imake: add run dependency to xorg-cf-files (#21251)ketsubouchi1-0/+7
2021-01-25picard: add v2.24.0 (#21249) (#21250)Pariksheet Nanda1-0/+1
2021-01-25opa-psm2: add v11.2.185 (#21208)Phil Carns2-88/+7
- also update to reflect Cornelis Networks as source maintainer rather Intel - also replace explicit install prefix patch with edit step file filter
2021-01-24New package: mpfi (#21238)iarspider1-0/+31
2021-01-24Updates of R CRAN packages (#21223)Glenn Johnson227-682/+2192
2021-01-24petsc: add a +mkl-pardiso variant (#21219)lpoirel1-0/+15
* petsc: add a +mkl-pardiso variant mkl_pardiso solver is distributed with intel-mkl * petsc: depend on mkl instead of intel-mkl Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-01-23New package: py-bigfloat (#21239)iarspider1-0/+21
* New package: py-bigfloat * Changes from review
2021-01-23New package: fplll (#21236)iarspider1-0/+33
* New package: fplll * Change from review
2021-01-23Fix git svn modules (#21169)bryanherman2-4/+18
* added Git run env to support svn variant modules * perl-alien-svn needs arp-util to be link * Update var/spack/repos/builtin/packages/git/package.py
2021-01-23Add strumpack v5.1.0, add support for ROCm/HIP (#21203)Pieter Ghysels1-12/+26
2021-01-22use module and package flags to get more correct mypy behavior (#21225)Tom Scogland2-32/+25
The first of my two upstream patches to mypy landed in the 0.800 tag that was released this morning, which lets us use module and package parameters with a .mypy.ini file that has a files key. This uses those parameters to check all of spack in style, but leaves the packages out for now since they are still very, very broken. If no package has been modified, the packages are not checked, but if one has they are. Includes some fixes for the log tests since they were not type checking. Should also fix all failures related to "duplicate module named package" errors. Hopefully the next drop of mypy will include my other patch so we can just specify the modules and packages in the config file to begin with, but for now we'll have to live with a bare mypy doing a check of the libs but not the packages. * use module and package flags to check packages properly * stop checking package files, use package flag for libs The packages are not type checkable yet, need to finish out another PR before they can be. The previous commit also didn't check the libraries properly, this one does.
2021-01-22Add flang variant to llvm package. (#21229)Nicholas Sly1-1/+40
Co-authored-by: sly <sly@lanl.gov>
2021-01-22cuda: add installation workaround for version 10.1.243 on ppc64le (#21200)Baptiste Jonglez1-0/+9
Fixes #21170
2021-01-22Bump up rocm version 4.0.0: rocm-gdb and mivisionx (#21137)arjun-raj-kuppala2-5/+8
2021-01-22py-pygit2, libgit2: add new versions (#21160)ketsubouchi2-3/+15
2021-01-22Added @property stdcxx_libs to return -lstdc++ for AOCC compiler (#21145)AMD Toolchain Support2-0/+6
2021-01-22adios2: Fix dependency issues (#21211)Chuck Atkins2-7/+182
- Typo in the SZ version (:ver should have been ver:) - Patch to fix python dependency when testing is disabled
2021-01-22isaac-server: add v1.5.1 and v1.5.2 (#21217)René Widera1-1/+4
Add latest releases of isaac-server and adjust jansson requirements.
2021-01-22py-scikit-learn: add v0.24.1 (#21158)Adam J. Stewart1-0/+1
2021-01-22py-pandas: add v1.2.1 (#21176)Adam J. Stewart1-0/+1
2021-01-22TensorFlow: add v2.4.1 (#21205)Adam J. Stewart1-1/+2
2021-01-22xrootd: add v4.12.6, v5.0.3; drop preferred (#21199)Dr. Christian Tacke1-1/+3
Add version 4.12.6, 5.0.3 I think, the preferred was there to keep version 4. But that's why we have spack, because people can install whatever version they want. And root has a properly versioned dependency.
2021-01-22py-memprof: new package (#20730)Jen Herting1-0/+21
2021-01-22py-filterpy: new package (#20747)Jen Herting1-0/+22
2021-01-22cnvnator: add -lcrypto to Makefile. (#21209)Tomoyasu Nojiri1-1/+1
2021-01-22isaac: add v1.5.1 and v1.5.2 (#21216)René Widera1-0/+2
2021-01-22AMD ROCm: Bump rocm-tensile with 3.9.0, 3.10.0, 4.0.0 releases (#20439)arjun-raj-kuppala2-13/+113
2021-01-22Add Quantum ESPRESSO version 6.7. (#21192)Dominik Gresch1-1/+4
2021-01-22add patch for not linking to clang rt bulitin lib, and apply patches to ↵Harmen Stoppels5-13/+141
3.9.0 too (#20937)
2021-01-21mumps: Fix for problematic src/makefile patch (#20590) (#20758)Tom Payerle3-1/+28
* mumps: Fix for problematic src/makefile patch (#20590) Minor change in src/Makefile between 5.2.0 and 5.3.3 causing patch to break. Split into 2 patchfiles * mumps: Additional patch for fixing #20590 This is to fix issue wherein build fails on Ubuntu due to undefined symbols, despite symbols being included in other libraries referenced on the compilation line. I believe the issue is that the inclusion of libsmumps.so was (due to my original patch) causing libmumps_common.so to be automatically loaded, but since libpords.so was not also required, the error was occuring. I have added libpords.so along with libmumps_common.so to be explicit dependencies of libsmumps.so, etc., which seems to resolve the issue.
2021-01-21amrex: fix missing hdf5 dependency (#20714)mic841-0/+1
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2021-01-21hdf: build with gcc10 (#20773)Kurt Sansom1-0/+8
2021-01-21docs: Update the CudaPackage (build system) description (#20742)Tamara Dahlgren1-16/+101
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
2021-01-21ecp-data-vis-sdk: Disable broken cinema variant (#21204)Chuck Atkins1-1/+3
2021-01-21miniconda3: add ppc64le package version (#21196)Baptiste Jonglez1-11/+30
It requires reorganizing version definitions to facilitate adding new architectures. This is inspired from the cuda package.
2021-01-21Add develop versions of faodel and zfp (#21201)Omar Padron2-0/+3
* add master version of faodel * add develop version of zfp
2021-01-21Added ROCmPackage (build system) documentation (#20743)Tamara Dahlgren3-2/+127
2021-01-21fix build failure due to #20759 change (#21185)Sreenivasa Murthy Kolam1-1/+13
2021-01-21catalyst: Fix for aarch64 (#21187)Tomoyasu Nojiri1-1/+1
2021-01-21Add support for building with an FFT layer in LBANN. Updated the (#21184)Brian Van Essen3-4/+9
HWLOC requirements to properly include CUDA and NVML variants as appropriate.
2021-01-21install lib/headers option support (#21186)arjun-raj-kuppala1-1/+6
2021-01-21abinit: add version 8.10.2. (#21188)Tomoki, Karatsu1-0/+1
2021-01-21[assimp] add new version 5.0.1 (#21191)vvolkl1-0/+1
2021-01-21Always set SPLA_OMP and SPLA_STATIC (#21195)Harmen Stoppels1-11/+4