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2020-05-18angsd: add 0.933, add misc programs to install (#16669)Justin S1-1/+17
* angsd: add 0.933, add misc programs to install * angsd: add r variant
2020-05-18paraview: use kits by default (#16698)Utkarsh Ayachit1-0/+13
Adding a variant to enable/disable kits and making the default use kits.
2020-05-18r-tensor: New package (#16697)Amjad Kotobi1-0/+20
2020-05-18r-goftest: New package (#16699)Amjad Kotobi1-0/+20
2020-05-18Update Apache arrow to 0.17.1 (#16701)Nick Robison1-0/+2
Update Arrow to the latest version. Also add an additional dependency on `thrift` when building with Parquet support.
2020-05-18Add new package: hyperscan (#16681)darmac1-0/+31
* Add new package: hyperscan * hyperscan: remove cmake_args()
2020-05-18New package: py-pyeda (#16416)archxlith1-0/+18
* New package: py-pyeda * py-pyeda: added dep for python 3.3 or greater * [py-pyeda] Added space in depends_on python line
2020-05-18PyYAML: fix linking to libyaml (#16682)Adam J. Stewart1-0/+32
2020-05-18revocap-refiner: fixed typo in pic flags (#16694)h-denpo1-1/+1
2020-05-17hwloc: Add libudev variant. (#16615)Toyohisa Kameyama1-0/+7
* hwloc: Add libudev variant. * typo fix. * Wrong version for libudev variant is fixed. * Add maintainers.
2020-05-17Add new version of COSMA: 2.2.0 (#16672)Marko Kabic1-13/+10
* Updated versions of COSMA. * Added an empty line for formatting. * Switched to sha256. * Renamed gpu variant to cuda. Extending the CudaPackage base class.
2020-05-17r-spatstat-data: New package (#16688)Amjad Kotobi1-0/+21
2020-05-17r-rms: New package (#16683)Amjad Kotobi1-0/+48
* r-rms: New package * r-rms: deleted duplicated dependency * r-rms: deleting comma
2020-05-17r-spatialpack : New package (#16664)Amjad Kotobi1-0/+19
* r-spatialpack : New package * r-spatialpack : R dependeny added type * r-spatialpack: Description was missing
2020-05-16py-scipy: Fix build with gcc@10: (#16687)Michael Kuhn1-0/+5
2020-05-16py-fastcluster: new package at 1.1.26 (#16588)Justin S1-0/+18
* py-fastcluster: new package at 1.1.26 * py-fastcluster: add py-setuptools dep
2020-05-16r-yaimpute: New package (#16658)Amjad Kotobi1-0/+20
2020-05-16r-envstats: New package (#16659)Amjad Kotobi1-0/+26
2020-05-16New package frontistr (#16660)h-denpo1-0/+33
"""Open-Source Large-Scale Parallel FEM Program for Nonlinear Structural Analysis"""
2020-05-16r-spatstat-utils : New package (#16663)Amjad Kotobi1-0/+21
2020-05-16hpctoolkit: add dependency on gotcha (#16670)Mark W. Krentel1-0/+2
2020-05-16Add Go versions 1.14.3 and 1.13.11 (#16673)Paul1-0/+2
2020-05-16Add new package: hiredis (#16679)darmac1-0/+21
2020-05-16Add new package: guacamole-server (#16680)darmac1-0/+26
2020-05-16intel-mpi: add libfabrics directory to SPACK_COMPILER_EXTRA_RPATHS (#15214)TZ1-0/+9
workaround for not finding an appropriate libfabrics.so with Intel MPI 2019+. Fixes #11140 and #12493
2020-05-16r-polspline: new package (#16648)Amjad Kotobi1-0/+22
* r-polspline: new package * r-polspline: updated urls
2020-05-15fix catalyst so that it doesn't depend on a particular spelling of python ↵Omar Padron1-1/+7
(#16667)
2020-05-15modules: use projections format for naming schemes (#16629)Greg Becker15-62/+171
* update tcl naming_scheme to use projections * add projections to lmod modules
2020-05-15py-petsc4py: allow ~mpi variant (#16595)Stephen Hudson1-13/+16
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-05-15likwid: fix build with gcc@10: (#16641)Michael Kuhn1-0/+6
2020-05-15binutils: fix build with gcc@10: (#16661)Michael Kuhn1-0/+3
The issue seems to be fixed in the development version already.
2020-05-14Pipelines: Support DAG scheduling and dynamic child pipelinesScott Wittenburg7-301/+444
This change also adds a code path through the spack ci pipelines infrastructure which supports PR testing on the Spack repository. Gitlab pipelines run as a result of a PR (either creation or pushing to a PR branch) will only verify that the packages in the environment build without error. When the PR branch is merged to develop, another pipeline will run which results in the generated binaries getting pushed to the binary mirror.
2020-05-14Support os-specific $padding in config:install_treeScott Wittenburg2-11/+108
Providing only $padding or ${padding} results in an attempt to substitute a padding of maximum system path length, while leaving room for the parts of the install path spack generates. Providing $padding-<len> or ${padding-<len>} simply substitutes padding of the specified length.
2020-05-14namd: build on aarch64. (#16639)Toyohisa Kameyama1-2/+3
2020-05-14Fixing the build directory for cardioid. (#16640)Robert Blake1-16/+0
* Fixing the build directory for cardioid. * These imports are no longer needed due to deletions. Co-authored-by: Robert Blake <rob.c.blake.3@gmail.com>
2020-05-14scorep: Fix build with gcc@10: (#16642)Michael Kuhn2-1/+16
2020-05-14lammps: set LAMMPS_POTENTIALS in the runtime environment (#16643)Andrew W Elble1-0/+4
so lammps can find the installed potential files
2020-05-14New package: maloc (#16631)Jen Herting1-0/+39
* [maloc] created template * [maloc] added some build dependencies * [maloc] added homepage and description * [maloc] added doc variant in an attempt to disable documentation. Still builds doc though... at least when there is a system doxygen found. Having doxygen being a dependency here can bring python in and cause issues for dependents, even when listed as only a build dependency. Maybe this is a bug? * [maloc] flake8 and fixme removal * [maloc] shorted description
2020-05-14ucx: cuda / gdrcopy variants (#16605)Andrew W Elble1-1/+18
picking up where #15724 left off.
2020-05-14miniforge3: a new package. (#16644)健美猞猁1-0/+34
2020-05-14at-spi2-core: Add 2.36.0 (#16645)Michael Kuhn1-4/+6
The pkg-config file of newer versions of at-spi2-core includes dependencies for xtst, recordproto, inputproto and fixesproto, so they have to be available at runtime as well.
2020-05-14atk: Add 2.36.0 (#16646)Michael Kuhn1-0/+1
2020-05-14at-spi2-atk: Add 2.34.2 (#16647)Michael Kuhn1-0/+1
2020-05-14r-hmisc: new version and updated dependency (#16649)Amjad Kotobi1-0/+2
2020-05-14r-survival: new version and updated dependency (#16650)Amjad Kotobi1-0/+2
2020-05-14Feature: Allow lmod configuration to set core specs (#16517)Greg Becker5-3/+30
Packages built with lmod core_compiler are placed in `Core`. Other packages may belong in `Core`. For example, python may be built with a proprietary compiler for performance, but belong on the `Core` directory. With this PR, lmod config can include a `core_specs` list. Any package that satisfies a spec in that list is placed in `Core`, regardless of its compiler or dependencies.
2020-05-13adios2: Fix build with gcc@10: (#16570)Michael Kuhn1-0/+5
2020-05-13Spack Package for ns-3 (#16630)Nathan1-0/+52
* Adding ns3 spack * Format and cleanup of ns3 spack package * Removing comments and fixing boost variant * Fixing formating
2020-05-13py-horovod: add new version (#16635)Adam J. Stewart1-2/+4
2020-05-13Helics: add python variant (#16625)Nathan1-0/+13
* Adding varient for python interface in HELICS * Append python interface to pythonpath * cleaning up blank lines * Update var/spack/repos/builtin/packages/helics/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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