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2016-06-17Python flake8 overhaulAdam J. Stewart1-76/+114
2016-06-17Added working Ferret specRobert D. French1-0/+103
Fixed ferret spec. It builds now Made ferret spec more flake8-y Fixed homepage and info text about Ferret Removed vim swap file Reverted changes to netcdf-fortran spec and added netcdf~mpi dependency to ferret spec to compensate for it Fixed flake8 issues!
2016-06-17'find and 'add' are options for adding compilers via command lineMario Melara1-7/+7
2016-06-17Fix activation of sites.py for sncosmoAdam J. Stewart4-8/+15
2016-06-17Add additional Astropy dependenciesAdam J. Stewart3-7/+89
2016-06-17Remove version constraintsAdam J. Stewart5-13/+9
2016-06-17Allow packages to buildAdam J. Stewart4-13/+9
2016-06-17Add py-sncosmo packageAdam J. Stewart6-22/+234
2016-06-16Add 'jdk' as a dependency.Glenn Johnson1-0/+1
Add jdk as a dependency so that R has support for java and allow packages that need java to work.
2016-06-16Add list_url for old versions.Glenn Johnson3-10/+12
2016-06-16Make install comment consistent with actual call.Glenn Johnson1-1/+1
2016-06-16Add validator for bioconductor packagesGlenn Johnson1-0/+13
This commit adds a validator function to make sure the versions of R and bioconductor are in sync.
2016-06-16Tweak how R packages are built.Glenn Johnson5-10/+14
Add bzip2 as a dependency to base R. Switch from installing the R packages from tar files to installing from the extracted directory. This is more in line with a standard install and also allows installing from VCS. Use the Bioconductor version for BiocGenerics and future Bioconductor packages. Suffix the package with 'bioc-$version' to indicate which Bioconductor release the package is a part of. This is actually more important than the actual version attached to individual packages although those are subject to change within the Bioconductor branch.
2016-06-16Fix flake8 errorsGlenn Johnson2-3/+4
Use Bioconductor provided Short URL for homepage in BiocGenerics. Wrap description text for utf variant in pcre.
2016-06-16Update version of BiocGenericsGlenn Johnson1-1/+1
The BioConductor repositories only keep the most recent version so this has to be bumped.
2016-06-16Use configure_args rather than optionsGlenn Johnson1-8/+8
Replaced 'options' with 'configure_args'. That seems like a better name and is consistent with the packaging guide.
2016-06-16Add variant for UTF support to pcreGlenn Johnson1-1/+9
This will build PCRE with UTF support by default. That seems to be reasonable for most environments.
2016-06-16Clean up R extensionsGlenn Johnson4-8/+16
Run the existing R extension packages through autopep8 to clean up.
2016-06-16Add version 3.3.0 of RGlenn Johnson1-0/+3
This commit adds the 3.3.0 version of R and adds dependencies on curl and pcre.
2016-06-16Clean up R package filesGlenn Johnson1-25/+19
- remove unused imports - apply pep8 - reformat text strings
2016-06-16Added init_config parameter so we don't initialize the config when user runs ↵Mario Melara2-22/+28
spack compiler add. Should ONLY add what user specifies. Find compilers takes in paths parameter.
2016-06-16Merge pull request #1068 from epfl-scitas/fixes/flake8_no_f405Todd Gamblin1-1/+1
Flake8: ignore F405
2016-06-16Merge pull request #944 from adamjstewart/features/bertiniTodd Gamblin1-0/+50
Add bertini package
2016-06-16Merge pull request #962 from adamjstewart/features/hplTodd Gamblin1-0/+119
Add HPL benchmark package
2016-06-16Replace 2.6-incompatible skipIf with a conditional.Todd Gamblin1-4/+8
- skipIf doesn't work with Python 2.6.
2016-06-16remove dead code, cleanup.Todd Gamblin2-42/+26
2016-06-16simplify instance check.Todd Gamblin1-2/+1
2016-06-16rename Mac OS X to macosTodd Gamblin3-21/+19
2016-06-16flake8: ignore F405alalazo1-1/+1
2016-06-16Added str method to mac_osx so that whenever we try to access darwins ↵Mario Melara2-9/+8
different operating systems we can grab the name correctly. This avoids having to worry whether we have a version attached to it or not.
2016-06-16Merge branch 'features/newarch' into developTodd Gamblin68-516/+2350
Conflicts: lib/spack/spack/config.py var/spack/repos/builtin/packages/lua/package.py
2016-06-16Fixes #460: Do not show variants by default in spack find.Todd Gamblin3-11/+30
This does two things: 1. By default `spack find` no longer shows variants. You have to supply `-v` to get that 2. This improves the `colify` implementation so that it no longer pads the rightmost column. This avoids the issue where if one spec was too long in the output, *all* specs would have space padding added to that width, and it would look like the output of `spack find` was double spaced. This no longer happens -- the one bad line wraps around and the other lines are now single-spaced when you use `-v` with boost.
2016-06-16qa : fixed flake8 issuesalalazo1-6/+9
2016-06-16espresso : updated to 5.4.0, added Parallel=Falsealalazo1-0/+9
2016-06-16Just call old os "unknown"Todd Gamblin1-1/+1
2016-06-16fix up packages for new architecture.Todd Gamblin4-9/+9
2016-06-16Add libxcb dependencies. Fix up packages to get py-basemap and stat to build.Todd Gamblin8-6/+170
2016-06-16be more tolerant when parsing new specs.Todd Gamblin1-6/+13
2016-06-16Add `__contains__` to arch to satsify old packages.Todd Gamblin1-2/+9
2016-06-15removed unused import per flake8 reportGregory L. Lee1-1/+0
2016-06-15do not create shebang.bak fileGregory L. Lee1-6/+1
2016-06-15two minor fixesGregory Becker2-9/+9
2016-06-15Two minor fixesGregory Becker2-8/+8
2016-06-15Update OpenMPI to 1.10.3Erik Schnetter1-0/+1
2016-06-15Ignore E501 for depends_on and extendsAdam J. Stewart1-0/+2
2016-06-15mpich based providers : shortened filter_compilersMassimiliano Culpo2-32/+9
2016-06-15Remove MPI support, fix INCLUDE filtersAdam J. Stewart1-21/+16
2016-06-15More template filteringAdam J. Stewart1-3/+23
2016-06-15Filter compilersAdam J. Stewart1-0/+24
2016-06-15Psi4 tweaksAdam J. Stewart1-15/+7
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