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2024-02-28perl-mojolicious: new package (#42899)Arne Becker1-0/+29
Adds Mojolicious
2024-02-28perl-cache-memcached and deps: new packages (#42911)Arne Becker2-0/+54
Adds Cache::Memcached and its dependencies. Installed OK with build-time tests. Added dependencies: - Cache::Memcached
2024-02-28Unit tests: skip tests that intermittently fail on Windows (#42909)Harmen Stoppels2-0/+2
2024-02-28mysql: explicity cast python command to str in _fix_dtrace_shebang() (#40781)Tom Payerle1-1/+1
This should fix issue #40780 We explicitly cast self.spec["python"].command to str in the filter_file call in _fix_dtrace_shebang to avoid the error ==> Error: TypeError: expected str, bytes or os.PathLike object, not Executable Not sure why the error is appearing (is it only for specific python versions, etc?), but the fix should be quite safe.
2024-02-28bison: remove unnessisary deps, add variant for colored output (#42209)Alec Scott1-4/+4
2024-02-28perl-yaml-syck: New package (#42892)Arne Becker1-0/+29
Adds YAML::Syck
2024-02-28perl-catalyst-runtime and deps: new packages (#42886)Arne Becker37-0/+1209
* perl-catalyst-runtime and deps: new packages This add Perl Catalyst::Runtime and its missing dependencies. Adds: - perl-catalyst-runtime - perl-apache-logformat-compiler - perl-cgi-simple - perl-cgi-struct - perl-class-c3-adopt-next - perl-cookie-baker - perl-data-dump - perl-devel-stacktrace-ashtml - perl-filesys-notify-simple - perl-getopt-long-descriptive - perl-hash-multivalue - perl-http-body - perl-http-entity-parser - perl-http-headers-fast - perl-http-multipartparser - perl-moosex-emulate-class-accessor-fast - perl-moosex-getopt - perl-moosex-methodattributes - perl-moosex-role-parameterized - perl-path-class - perl-plack - perl-plack-middleware-fixmissingbodyinredirect - perl-plack-middleware-methodoverride - perl-plack-middleware-removeredundantbody - perl-plack-middleware-reverseproxy - perl-plack-test-externalserver - perl-posix-strftime-compiler - perl-stream-buffered - perl-string-rewriteprefix - perl-test-mocktime - perl-test-tcp - perl-test-time - perl-test-trap - perl-tree-simple - perl-tree-simple-visitorfactory - perl-uri-ws - perl-www-form-urlencoded
2024-02-28AOCC: add v4.2.0 (#42891)AMD Toolchain Support1-1/+5
Co-authored-by: vijay kallesh <Vijay-teekinavar.Kallesh@amd.com>
2024-02-28Upgrade TensorFlow Probability with newer versions (#42673)Jonas Eschle1-9/+40
* enh: add newer versions * enh: add newer versions * format * fix typo * Update package.py * make jax and TF optional dependencies * style fix * remove dependency * remove old TFP version * fix: style
2024-02-28ParaView Release Candidate 5.12.0-RC3 (#42654)kwryankrattiger1-1/+1
2024-02-28perl-json-xsand deps: new packages (#42904)Arne Becker3-0/+84
Adds JSON::XS and its deps: - Canary::Stability - Types::Serialiser
2024-02-28e4s: new packages: glvis, laghos (#42847)eugeneswalker5-4/+14
* e4s: new packages: glvis, laghos * gl: require: osmesa * be explicit: glvis ^llvm so that llvm-amdgpu not chosen * glvis fails on oneapi stack due to issue 42839
2024-02-28versions: simplify list if union not disjoint (#42902)Harmen Stoppels2-25/+48
Spack merges ranges and concrete versions if they have non-empty intersection. That is not enough for adjacent version ranges. This commit ensures that disjoint ranges in version lists are simplified if their union is not disjoint: ```python "@1.0:2.0,2.1,2.2:3,4:6" # simplifies to "@1.0:6" ```
2024-02-28package_py_systemd_python_improve (#42865)Sinan1-0/+3
Co-authored-by: sbulut <sbulut@3vgeomatics.com>
2024-02-28Add package zfit interface (#42666)Jonas Eschle1-0/+29
* Add package zfit interface * add maintainer * [@spackbot] updating style on behalf of jonas-eschle * Update package.py * Update package.py * Update package.py * [@spackbot] updating style on behalf of jonas-eschle * Update var/spack/repos/builtin/packages/py-zfit-interface/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update package.py --------- Co-authored-by: jonas-eschle <jonas-eschle@users.noreply.github.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-02-27C-Blosc2: Fuzzer Tests (#42881)Axel Huebl1-0/+1
The fuzzer tests are a bit flaky and have linker issues on clang. We generally only should build them in testing.
2024-02-27e4s oneapi: remove outdated package preferences (#42875)eugeneswalker1-7/+0
2024-02-27Adding dependency of roctracer-dev and patch in miopen-hip (#42637)renjithravindrankannath3-2/+47
2024-02-27openexr: Add custom libs property (#42274)Tom Payerle1-0/+11
Libraries for openexr are named libOpenEXR*.so, etc., so the default libs handler in spec does not find them. Add a custom libs property to address this. Partial fix for #42273 Co-authored-by: payerle <payerle@users.noreply.github.com>
2024-02-27regtools: add new package (#42852)George Young1-0/+22
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2024-02-27btop: add cmake version restriction (#42835)YI Zeping1-0/+2
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-02-27bazel: allow offline build of major versions 5 and 6 (#41575)Lydéric Debusschère1-6/+51
* bazel: allow offline build of major versions 5 and 6; add variant download_data * bazel: add maintainer LydDeb * bazel: install offline only; remove variant download_data * bazel: fix variable name: resource_dico --> resource_dictionary * bazel: fix style * bazel: fix the build of version 4 * bazel: add comment about resources * bazel: access to resource stages with self.stage * bazel: add except to solve AttributeError: 'Stage' object has no attribute 'resource' --------- Co-authored-by: LydDeb <lyderic.debusschere@eolen.com>
2024-02-27delphes: use the same C++ standard as in ROOT (#42816)Juan Miguel Carceller1-12/+2
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2024-02-27garfieldpp: Add version 5.0 (#42817)Juan Miguel Carceller1-0/+1
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2024-02-27Open MPI: adjust pmix dependency for 5.0.x (#42827)Howard Pritchard1-1/+1
for various reasons had to advance dependency of 5.0.2 to at least pmix 4.2.4. 5.0.1 and 5.0.0 can also build with 4.2.4 pmix or newer. related to #42651 Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2024-02-27openfoam: add mpfr search paths (#42779)AMD Toolchain Support1-0/+2
Co-authored-by: Branden Moore <branden.moore@amd.com>
2024-02-27skip test which is causing spurious failures on Windows (#42832)Peter Scheibel1-0/+3
2024-02-27eigenexa: add 2.7–2.12 (#38170)Eisuke Kawashima1-3/+24
2024-02-27e4s ci: use ubuntu 22.04 images (#42843)eugeneswalker7-28/+9
2024-02-27gpuscout: new package (#42761)stepanvanecek1-0/+28
Co-authored-by: Stepan Vanecek <stepan@Stepans-MBP.fritz.box>
2024-02-27double-batched: add v0.5.0 (#42850)Carsten Uphoff1-0/+1
Signed-off-by: Carsten Uphoff <carsten.uphoff@intel.com>
2024-02-27dd4hep: new version 1.28 (#42846)Wouter Deconinck1-0/+1
2024-02-27root: add dependent package required for build time tests (#42849)Kensuke WATANABE1-0/+2
2024-02-27bdsim: use the same C++ standard as in ROOT, add a patch (#42031)Juan Miguel Carceller2-1/+23
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2024-02-27build(deps): bump pytest from 8.0.1 to 8.0.2 in /lib/spack/docs (#42861)dependabot[bot]1-1/+1
Bumps [pytest](https://github.com/pytest-dev/pytest) from 8.0.1 to 8.0.2. - [Release notes](https://github.com/pytest-dev/pytest/releases) - [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst) - [Commits](https://github.com/pytest-dev/pytest/compare/8.0.1...8.0.2) --- updated-dependencies: - dependency-name: pytest dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-02-27picard: add version 3.1.1 (#42862)downloadico1-0/+5
2024-02-27rocm-gdb: add v6.0.2 (#42855)afzpatel1-2/+4
2024-02-26refactor: add type annotations and refactor solver conditions (#42081)Todd Gamblin2-91/+121
Refactoring `SpackSolverSetup` is a bit easier with type annotations, so I started adding some. This adds annotations for the (many) instance variables on `SpackSolverSetup` as well as a few other places. This also refactors `condition()` to reduce redundancy and to allow `_get_condition_id()` to be called independently of the larger condition function. Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-02-26Update camp missing headers patch to be applied with all compilers (#42857)Mikael Simberg2-1/+1
2024-02-26py-find-libpython: 0.3.1 (#42853)Erik Heeren1-1/+3
* py-find-libpython: 0.3.1 * py-find-libpython: sort versions
2024-02-26ImageMagick: fewer dependencies on macOS (#42739)Adam J. Stewart1-2/+2
2024-02-26py-pyomo: add v6.7.1 (#42795)Miranda Mundt1-4/+14
* Update Pyomo spack package for 6.7.1 release * Apply changes from @adamjstewart * Update sphinx+Pyomo versions * Whoops - typo
2024-02-25Update PyTorch ecosystem (#42819)Adam J. Stewart4-98/+108
2024-02-25e4s external rocm ci: use ubuntu 22 image with rocm 5.7.1 (#42842)eugeneswalker2-114/+80
* e4s external rocm ci: use ubuntu 22 image with rocm 5.7.1 * comment out slate+rocm due to build error
2024-02-25e4s ci: add py-mpi4py, py-numba (#42845)eugeneswalker5-27/+37
2024-02-25py-ipyvuetify: new package (#42836)Jeremy Fix1-0/+30
* py-ipyvuetify: new package * Limit py-jupyter-packing version to 0.7.x Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Fix py-jupyterlab version and type Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Fix py-ipyvue version range to exclude 2 Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * rm py-wheel, already considered for PythonPackage * fix: pynpm only required for build, reorder dependencies as in the pyproject.toml --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-02-25snakemake: new version with plugins (#42713)Maciej Wójcik25-20/+653
* snakemake: add Snakemake 8 with dependencies * snakemake: add missing description * Whitespace * Whitespace * Whitespace * Whitespace * py-conda-inject: add constraint for Python Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * py-snakemake-executor-plugin-azure-batch: add constraint for Python Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * py-snakemake-executor-plugin-cluster-generic: add constraint for Python Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * py-snakemake: add upper bound for Python * py-snakemake-executor-plugin-drmaa: specify dependency type Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * py-snakemake-executor-plugin-googlebatch: correct dependency version Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * py-snakemake-executor-plugin-tes: correct dependency version Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * py-snakemake-storage-plugin-s3: reorder * snakemake: remove newly added variants * snakemake: remove newly added variants * snakemake: remove newly added variant * snakemake: update version * snakemake: update version * snakemake: whitespace * py-snakemake-storage-plugin-s3: update version * snakemake: use newer version * snakemake: whitespace * snakemake: update interfaces * py-snakemake-storage-plugin-gcs: link issue * snakemake: update versions --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-02-24[laghos] Add a patch for MPI_Session (#42841)Veselin Dobrev1-0/+7
2024-02-24zoxide: new package (#42840)Pranav Sivaraman1-0/+22
* feat: zoxide package * Apply suggestions from code review Co-authored-by: Alec Scott <alec@bcs.sh> --------- Co-authored-by: Alec Scott <alec@bcs.sh>
2024-02-24py-lightly: add v1.5.0 (#42820)Adam J. Stewart1-0/+1
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