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2019-08-01Fix QT4 build for mac (#10944)Seth R. Johnson9-207/+898
This updates the Spack QT package to enable building qt version 4 on MacOS. This includes the following changes to the qt package: * add version 4.8.7 * add option to build with or without shared libs * add options to disable tools, ssl, sql, and freetype support * add qt4-tools patch when building qt@4+tools * add option to build as a framework (only available on MacOS) * replace qt4-el-capitan patch with qt4-mac patch (which includes the edits from qt4-el-capitan) * apply qt4-pcre-include-conflict.patch only for version 4.8.6 (rather than all 4.x versions) * apply qt4-gcc-and-webkit.patch for 4.x versions before 4.8.7 and create a separate qt4-gcc-and-webkit-487.patch for version 4.8.7 * update patch function for qt@4 on MacOS to update configure variables relevant to Spack (e.g. PREFIX) * add option to build freetype with Spack, as a vendored dependency of QT, or not at all (default is to build with Spack) This includes the following edits outside of the qt package: * Update MacOS version utility function to return all parts of the Mac version (rather than just the first two) * gettext package: implement "libs" * python package: add gettext as a dependency
2019-08-01Buildcache: skip binary string replacement with padding when the new install ↵Patrick Gartung1-5/+32
path is longer than the old install path. (#12227) * Raise an exception and exit with a meaningful message when binary path substitution fails. * Skip binary text replacement with padding and issue a warning when the new install path is longer than the old install path.
2019-08-01Add HDF5 variant to Legion package (#12221)Ben Bergen1-0/+5
2019-08-01 modified: var/spack/repos/builtin/packages/blis/package.py (#12225)Sajid Ali1-1/+1
2019-08-01Add libflame (#12193)Sajid Ali2-0/+102
* Add libflame new file: var/spack/repos/builtin/packages/libflame/Makefile_5.1.0.patch new file: var/spack/repos/builtin/packages/libflame/package.py * modified: var/spack/repos/builtin/packages/libflame/package.py
2019-08-01py-pyqt5: add missing py-enum34 dependency (#12224)Adam J. Stewart1-0/+2
2019-08-01bdw-gc: add variant for Multithreading (#12223)t-karatsu1-1/+9
2019-07-31unzip: fix build for cray back-endMark W. Krentel1-2/+5
Fixes #12007. The Cray cc wrappers don't handle the -s flag (strip) cleanly, It's not essential to strip the binary, so just remove the flag on Cray. Note: the default build on Cray is for the back end and the unzip binary won't run on the front end. To build for FE, use something like arch=cray-fe-x86_64.
2019-07-31fix mpa package build error with a patch (#12217)Gregory Lee2-0/+23
2019-07-31patch launchmon to fix char * conversion error (#12219)Gregory Lee2-0/+21
2019-07-31Magma: fix prefix (#12220)Rémi Lacroix1-2/+2
`prefix` is not available in `cmake_args` method, use `self.prefix`. Fixes #12214.
2019-07-31should not need bin prefix on spack command (#12215)Levi Baber1-1/+1
2019-07-31docs: update tutorial slides for PEARC19Todd Gamblin1-9/+9
2019-07-31Update Package Creation Tutorial for PEARC19 (#12209)Adam J. Stewart8-245/+258
* Update Package Creation Tutorial for PEARC19 * A few remaining fixes * Fix section link
2019-07-31Preventing jsoncpp from building tests (#11948)Matthieu Dorier1-1/+6
* Preventing jsoncpp from building tests jsoncpp: making -DJSONCPP_WITH_TESTS=OFF conditioned by self.run_tests
2019-07-31CMake: make ninja verbose as well (#12200)Christoph Junghans1-0/+1
2019-07-31F18: Fix the location to the f18 binary (#12186)Ondřej Čertík1-1/+1
2019-07-31phist: added version 1.8.0 (#12201)jthies1-0/+1
2019-07-31igvtools: fixed query on jdk instead of java (#12195)t-karatsu1-1/+1
2019-07-31Print environment name when removing active env (#12198)Javier Cervantes1-1/+2
2019-07-31Fix Sphinx deprecation warning when building docs (#12205)Adam J. Stewart1-3/+2
* Fix Sphinx deprecation warning when building docs * Set minimum required version of Sphinx
2019-07-31kim-api: added version 2.1.2 (#12189)Ryan S. Elliott1-1/+2
2019-07-31genomefinisher: fixed query on jdk instead of java (#12196)t-karatsu1-1/+1
2019-07-30Add pandas 0.25.0 (#12173)Adam J. Stewart1-5/+37
2019-07-30Add tables 3.5.2 (#12172)Adam J. Stewart1-14/+21
2019-07-30Update numexpr dependency version (#12168)Adam J. Stewart1-1/+1
2019-07-30Add py-matplotlib 3.1.1 (#12164)Adam J. Stewart1-73/+98
2019-07-30Add py-wxpython package (#12163)Adam J. Stewart11-9/+47
2019-07-30Add py-cairocffi package (#12161)Adam J. Stewart1-0/+27
2019-07-30Add SIPPackage base class (#12157)Adam J. Stewart18-44/+371
2019-07-30Add Magics 4.1.0 (#12078)Adam J. Stewart1-2/+7
2019-07-30Add eccodes 2.13.0 (#12077)Adam J. Stewart1-1/+4
2019-07-30Allow bsseeker to build with Python 3 (#12075)Adam J. Stewart1-1/+1
2019-07-30Add py-pipits 2.4 (#12074)Adam J. Stewart4-8/+81
* Add py-pipits 2.4 * Flake8 fix
2019-07-30mii: new package at 1.0.2 (#12184)Justin S1-0/+25
* mii: new package at 1.0.2 * mii: fix improper formatting in description * mii: add 1.0.3
2019-07-30gromacs: added version 4.5.5 (#12197)健美猞猁1-0/+1
2019-07-29New package: cgdb (#12154)Ben Bergen1-0/+27
2019-07-29LIBXSMM package: add version 1.13 and optional shared libs (#11998)Hans Pabst1-13/+14
* Add +shared variant, which builds shared library in addition to the static library. * Install libraries even when specifying the header-only option (header-only is just about installing an additional folder). * An additional make call is not required to build generator executables (they are built by default). * Streamlined help-line of each variant.
2019-07-29hpgmp package: Don't add cpu=native on ARM when using gcc 5.x or before (#12034)Toyohisa Kameyama1-1/+1
2019-07-29CMOR package: add version 3.4.0 (Python3-compatible) (#12076)Adam J. Stewart1-2/+3
2019-07-29Quantum Espresso package: Specify F90 compiler (#12119)Nick Forrington1-0/+1
2019-07-29SimulationIO package: add version 9.0.1 (#12079)Adam J. Stewart1-1/+3
2019-07-29catalyst package: Fix paths used for intermediate code generation (#12082)Chuck Atkins1-5/+5
Fixes #12065
2019-07-29PISM package: add version 1.1.4 (#12083)Adam J. Stewart1-1/+3
2019-07-29Typo fixes in Environments Tutorial (#12107)Adam J. Stewart1-11/+11
2019-07-29Fix some Mac constraint checks (#12138)Adam J. Stewart3-10/+6
* Fix Mac platform check for dependency in py-ipython package: 'when' constraints in Spack directives must be Specs (either a Spec object or a Spec in string format) * Fix Mac version check in py-numpy: platform.mac_ver() returns a 3-part string as its first tuple item so the check as written would never pass; use Spack Version object to simplify check. * Fix Mac version check in qt package (the check was incorrectly comparing ints and strings) and use Spack version object to simplify check.
2019-07-29Add conflicts statement for Python-3.6.7+ and Intel compilerGlenn P Johnson1-0/+5
Python-3.6.7 and up do not build with the Intel compiler - https://bugs.python.org/issue35473 - https://bugs.python.org/issue37415
2019-07-29zeromq package: choose URL based on version; add versions (#12149)Federico Ficarelli1-4/+14
* Add versions 4.3.0, 4.3.1, and 4.3.2 * The URL format changed after 4.1.4, so this adds a url_for_version function to choose the URL format based on the version
2019-07-29Gromacs package: add openmp, mdrun_only, double_precision options (#12150)Hironori-Yamaji1-0/+20
2019-07-29New package: py-pytest-isort (#12160)Adam J. Stewart1-0/+19
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