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2017-07-13Adding OpenMP variant to Trilinos. Also building NetCDF with PNetCDF ↵Jon Rood1-19/+25
directly, for Trilinos. (#4687) * Adding OpenMP variant to Trilinos. Also building NetCDF with PNetCDF in Trilinos when necessary. * Adding runtime error for PNetCDF variant in Trilinos when necessary. Omitting unnecessary openmp variant for Trilinos in Nalu. * Changing variant checks to conflicts statements. * Adding comments to Trilinos package.
2017-07-13idba: new package (#4722)Audrey Thoma1-0/+48
2017-07-13infernal: new package (#4724)Audrey Thoma1-0/+49
2017-07-13last: new package (#4729)Audrey Thoma1-0/+39
2017-07-13maverick: new package (#4731)Audrey Thoma1-0/+48
2017-07-13Add package for daligner (#4734)George Hartzell1-0/+51
2017-07-13mcl: new package (#4732)Audrey Thoma1-0/+36
2017-07-13dealii: workaround for concretization bug (#4735)Denis Davydov2-2/+6
* dealii: workaround for concretization bug * trilinos: add Anasazi which got disabled recently
2017-07-13mitofates: new package and dependency libsvm (#4741)Audrey Thoma2-0/+84
2017-07-13 Added ASPA Proxy App (#4743)Akhil Reddy Patlolla1-0/+72
2017-07-12hpx: added new package (#4709)Christoph Junghans1-0/+49
2017-07-12Typo: submdoules -> submodules (#4716)George Hartzell1-1/+1
2017-07-11genometools: new package (#4706)Audrey Thoma1-0/+45
* genometools: new package * genometools: fixing perl dependency type
2017-07-10fseq: new package (#4702)Audrey Thoma1-0/+41
* fseq: new package * fseq: fixed dependency type
2017-07-10New Package: MiniAMR (#4701)homerdin1-0/+70
* New Package: MiniAMR * Removed empty braces string formatting
2017-07-10New Package: HPCCG (#4693)homerdin1-0/+77
* New Package: HPCCG * Moved Run Script Install Location
2017-07-10New Package: MiniAero (#4694)homerdin1-0/+62
2017-07-10exabayes: new pacakge (#4695)Audrey Thoma1-0/+57
* exabayes: new pacakge * exabayes: added configure arg * exabayes: adding comments regarding compilers
2017-07-10csdp: new pacakge (#4700)Audrey Thoma1-0/+43
2017-07-10ea-utils: new package (#4690)Audrey Thoma1-0/+51
* ea-utils: new package * ea-utils: simplifying self.spec.prefix * ea-utils: added comment about perl * ea-utils: fixing flake8 error
2017-07-09New package: CoMD (#4697)EmreAtes1-0/+56
* New package: comd * Avoid re-defining build
2017-07-07GCC: Add strip variant to reduce installation size (#4670)Mike DePaulo1-0/+9
* gcc: Add strip variant * gcc: Fix strip variant description being too long
2017-07-07Add a package for tophat (#4698)George Hartzell1-0/+47
Lightly tested on CentOS 7.
2017-07-07fastx-toolkit: solving gcc conflict (#4696)Audrey Thoma1-0/+2
2017-07-07New package: quinoa (#4686)Christoph Junghans1-0/+65
2017-07-07Added TeaLeaf Package (#4683)homerdin1-0/+77
2017-07-07Isaac Server 1.3.1: New version (#4689)Axel Huebl1-0/+1
adds a new release of isaac-server.
2017-07-07emboss: new package (#4691)Audrey Thoma1-0/+40
2017-07-07New Packages: gearshifft, clFFT (#4560)Axel Huebl2-0/+129
Adds the `gearshifft` package, a benchmark suite for heterogeneous implementations of FFTs. Adds clFFT, a software library containing FFT functions written in OpenCL. see: https://github.com/clMathLibraries/clFFT
2017-07-06patch config.guess after autoreconf step (#4604)Gregory Lee1-18/+9
2017-07-06cap3: new package (#4680)Audrey Thoma1-0/+43
* cap3: new package * cap3: removing boilerplate * cap3: fixed version and added doc
2017-07-06Make vcftools actually install its libraries (#4682)George Hartzell1-2/+2
The vcftools package was installing its Perl libraries into a directory in the staging directory named 'lib', instead of installing them into `prefix.lib` where they should have been because the value passed to the configure script was wrong. The result was that any attempt to run one of the scripts in the package failed with something like: > Can't locate VcfStats.pm in @INC (you may need to install the > VcfStats module) [...] This fix provides the correct information in `configure_args`. Tested lightly on CentOS 7.
2017-07-06Isaac 1.3.1: New version (#4685)Axel Huebl1-0/+1
adds a new release of isaac. (1.3.0 forgot to bump the internal version number in include macros)
2017-07-06cdbfasta: new package (#4681)Audrey Thoma1-0/+39
2017-07-05New package butter (#4679)Audrey Thoma1-0/+46
* butter: new package * butter: fixed dependency type
2017-07-05New package bucky (#4677)Audrey Thoma1-0/+57
2017-07-05Fix for building osu-micro-benchmarks on OS X (librt not avaialble/required) ↵Pramod S Kumbhar1-1/+5
(#4675) * Fix for building osu-micro-benchmarks on OS X (librt not available/required) * Fixed typo and replaced extend by append
2017-07-05Package ampliconnoise (#4676)Audrey Thoma1-0/+67
* ampliconnoise: new package * ampliconnoise: fixed installation * ampliconnoise: fixing install again
2017-07-05libint: factored parts of configure_args into their own functions (#4211)Massimiliano Culpo1-10/+22
* libint: factored parts of configure_args into their own functions * libint: added -xSSE2, as suggested by @lee218llnl
2017-07-05gcc: Add version 6.4.0 (#4673)Michael Kuhn1-0/+10
2017-07-04New package: DataSpaces (#4651)Philip Davis1-0/+91
* Dataspaces spack package, hard-wired for ubuntu VM * Initial commit of dataspaces spack package * Made changes and additions necessary to install on Cori and Titan * Added temp 1.6.2.1 for testing * Updated tar file for 1.6.2 * Fixed formatting * Set the type of build dependencies * Changed the way autogen.sh is called for compatibility * Use append instead of extend to add configure flags * Various syntax fixes * Switched string checking to method for compatibility Now using the six library for Python 3 compatibility. Thanks @adamjstewart * Made MPI variant default
2017-07-04Parametrized lock test and make it work with MPITodd Gamblin2-46/+255
- Lock test can be run either as a node-local test or as an MPI test. - Lock test is now parametrized by filesystem, so you can test the locking capabilities of your NFS, Lustre, or GPFS filesystem. See docs for details.
2017-07-04Make filesytem more resilient to concurrent updates.Todd Gamblin1-2/+12
- Uses O_CREAT for touch (for guaranteed atomic open on NFS, multi-node) - Ignore concurrent create errors in mkdirp
2017-07-04Ported lock test to pytest.Todd Gamblin1-519/+630
2017-07-03mpix-launch-swift: MPIX_Launch library tailored to work using swift-t (#4656)Kshitij Mehta1-0/+47
2017-07-03add openfoam community packages for adiosWrite (#3726)Mark Olesen1-0/+136
2017-07-03new OpenFOAM June 2017 release: OpenFOAM-v1706 (#4652)Mark Olesen14-23/+27
- renamed develop version from 'plus' to 'develop' - patches now prefixed by corresponding OpenFOAM version number. This makes it easier to sort and see what old/junk exists. - remove MPI_BUFFER_SIZEk env variable (for all openfoam variants). The OpenFOAM shell setup addresses this and there is no reason to pollute the module environment at this stage.
2017-07-02sabre (#4619)Levi Baber1-0/+48
* sabre initial commit, works but test does not * removing test until I have time to fix it * sabre: fixing flake8 errors * sabre: changing to MakefilePackage
2017-07-02Apply patch to allow users to change path of lock file (#4649)Jimmy Tang2-0/+22
See - https://github.com/Microsoft/CNTK/issues/62
2017-07-02PETSc requires metis build with compatible numerical precision (#4654)Barry Smith1-2/+4
Commit-type: bug-fix, portability-fix Funded-by: IDEAS Project: xSDK Time: .4 hours Reported-by: Stanislav Y Sergienko <ssergien@anl.gov>
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