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2024-05-04build(deps): bump codecov/codecov-action from 4.3.0 to 4.3.1 (#43945)dependabot[bot]3-7/+7
Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 4.3.0 to 4.3.1. - [Release notes](https://github.com/codecov/codecov-action/releases) - [Changelog](https://github.com/codecov/codecov-action/blob/main/CHANGELOG.md) - [Commits](https://github.com/codecov/codecov-action/compare/84508663e988701840491b86de86b666e8a86bed...5ecb98a3c6b747ed38dc09f787459979aebb39be) --- updated-dependencies: - dependency-name: codecov/codecov-action dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-05-04tmux: add v3.4 and missing yacc build dep (#43975)Seth Bromberger1-0/+3
2024-05-04pythia8: Add a gzip variant and filter some compiler wrapper paths (#43807)Juan Miguel Carceller1-4/+8
* Add a gzip variant and filter some compiler wrapper paths * Apply suggestions from code review Co-authored-by: Wouter Deconinck <wdconinc@gmail.com> --------- Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com> Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-05-04fix iconv from libc (#43996)Harmen Stoppels20-64/+67
* fix iconv from libc * fix args in glib
2024-05-04gitlab: release branch pipelines rebuild what changed (#43990)Scott Wittenburg1-12/+2
2024-05-03e4s-alc: add v1.0.2 (#44001)eugeneswalker1-0/+1
2024-05-03Add a gmake dependency for TAU (#43870)wspear1-0/+1
We discovered a case where the system gmake can get confused by spack's build environment. Let's use a spack-provided gmake for consistent builds.
2024-05-03Add py-flash-attn@2.4.2 (#43960)Auriane R1-0/+4
2024-05-03fix package permissions docs link for gaussian packages (#43998)Christopher Christofi2-2/+2
2024-05-03Modernize py-torch-geometric and dependencies (#43984)Adam J. Stewart5-112/+175
* Modernize py-torch-geometric and dependencies * Forgot one maintainer
2024-05-03hdf package: fix building with apple-clang@15: (#43964)Matthew Thompson1-1/+1
2024-05-03globalarrays package: add missing dependencies for armci=ofi/openib (#43971)Carlos Bederián1-0/+3
2024-05-03hpl: linking against fujitsu ssl2 if available (#43978)jdomke1-9/+12
* linking against fujitsu ssl2 if available --------- Co-authored-by: domke <673751-domke@users.noreply.gitlab.com>
2024-05-03adding clang compiler checks which behaves exactly like aocc (#43976)jdomke1-0/+6
Co-authored-by: domke <673751-domke@users.noreply.gitlab.com>
2024-05-03graphicsmagick package: add version 1.3.43 (#43977)snehring1-0/+1
2024-05-03New package: py-pylith (#43987)downloadico1-0/+26
2024-05-03preCICE: increase baseline versions for next ver (#43985)Frédéric Simonis1-0/+8
2024-05-03sowing: add @master (#43991)Satish Balay2-1/+2
2024-05-03Add a default provider for `armci` (#43997)Massimiliano Culpo1-0/+1
2024-05-03Add checksum for R v4.4.0 (#43973)Owen Solberg1-1/+2
Co-authored-by: Owen Solberg <owen.solberg@sana.com>
2024-05-03openfast: updates to package (#43994)Jon Rood1-5/+8
2024-05-03r-asreml: adding new package (#43970)snehring1-0/+43
Signed-off-by: Shane Nehring <snehring@iastate.edu>
2024-05-03concretizer args: --fresh-roots == --reuse-deps (#43988)Harmen Stoppels4-50/+57
Since reuse is the default now, `--reuse-deps` can be confusing, as it technically does not imply roots are fresh. So add `--fresh-roots`, which is also easier to discover when running `spack concretize --fre<tab>`
2024-05-03Add -fPIC to hdf-eos2 builds (#43794)Dom Heinzeller1-0/+11
* Add -fPIC to hdf-eos2 builds * Use self.compiler.cc_pic_flag instead of -fPIC * Fix style in var/spack/repos/builtin/packages/hdf-eos2/package.py
2024-05-03NWChem ARMCI-MPI variant and optional TCE builds (#43883)Jeff Hammond2-7/+44
* WIP NWChem with ARMCI-MPI and TCE optional * rename armci-mpi to armcimpi * add version for git * add ARMCI-MPI support to NWChem package EXTERNAL_ARMCI_PATH needs to be set to the ARMCI-MPI package install prefix. I could not get it from spec["armcimpi"] but it worked to use the dependent build environment method to export a generic environmental variable to use instead. * i suppose i can maintain NWChem as well * check rejects option that dozens of packages use i do not have time to fight with this nonsense Run . share/spack/setup-env.sh ==> Error: armcimpi version 'master' has extra arguments: 'branch' Valid arguments for a url fetcher are: 'url', 'sha256', 'md5', 'sha1', 'sha224', 'sha384', 'sha512', and 'checksum' Error: Process completed with exit code 1. * style * ARMCI-MPI needs depends_on; the rest seems fixed * fix ARMCI selection per review feedback from @zzzoom https://github.com/spack/spack/pull/43883#discussion_r1585014147 * address reviewer feedback from @yizeyi18 https://github.com/spack/spack/pull/43883#discussion_r1587228084 elaborate on what +extratce does, in terms of the NWChem build environment variables, some of which are documented on https://nwchemgit.github.io/TCE.html. * style * Update var/spack/repos/builtin/packages/nwchem/package.py --------- Signed-off-by: Jeff Hammond <jeff.science@gmail.com> Co-authored-by: Carlos Bederián <4043375+zzzoom@users.noreply.github.com>
2024-05-03Update package.py for vacuumms 1.2.0 (#43948)Frank Willmore1-6/+33
* updating vacuumms for new release * formatting * re-order versions and remove triple quote
2024-05-03[TAU package] Update with +rocprofv2. Updated some tests. (#43937)jalcaraz1-154/+112
* [TAU package] Update with +rocprofv2. Updated some tests. pdated with +rocprofv2 flag. Only works with rocm-core >= 6.0.0 Can be tested with (Omnia): spack install tau@master +rocm+rocprofv2 %gcc@11 Needs the last commit in our local repository, can be done by modifying the "git = " line, or waiting until the public one is updated. In the case that tests cause issues when building TAU, there is the flag: disable_tests = False The rocm test is disabled by default, as the PR regarding tests loading dependencies is not solved (PR#43682). * [@spackbot] updating style on behalf of jordialcaraz --------- Co-authored-by: jordialcaraz <jordialcaraz@users.noreply.github.com>
2024-05-03py-tensorflow: fix aarch64 build (#43852)Andrew W Elble2-0/+59
* py-tensorflow: fix aarch64 build * [@spackbot] updating style on behalf of aweits * patch format * change patch strategy, actually get the logic correct in the patch * only patch 2.16.1 onwards for aarch64 * __CUDACC__ not __NVCC__ * !(defined(__NVCC__) && defined(__CUDACC__)) --------- Co-authored-by: aweits <aweits@users.noreply.github.com>
2024-05-03Make runtimes depend on libc only on linux (#43981)Massimiliano Culpo2-2/+4
2024-05-03Add rosco package (#43822)Marc T. Henry de Frahan3-0/+89
* Add rosco package * format * remove unused * Add in other versions * start adding some patches * finish adding the patches
2024-05-03py-torch: set TORCH_CUDA_ARCH_LIST globally for dependents (#43962)Adam J. Stewart9-45/+12
2024-05-02Spec.satisfies: fix a bug with concrete spec from JSON (#43968)Massimiliano Culpo4-4/+28
Fix a bug triggered by missing a virtual on some transitive edge, in a subdag of a pure build dependency.
2024-05-02docs: re-enable google analytics (#43974)Todd Gamblin1-0/+12
We recently switched to using the new ReadTheDocs with "addons". That includes its own analytics, which is nice, but we also want to continue using our GA4 analytics. Adding GA4 is no longer supported by RTD, so we have to add it manually. - [x] re-add the gtag to all pages, manually Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-05-02py-torch: conflict with newer cuda (#43969)Adam J. Stewart1-2/+3
2024-05-02minimap2: adding version 2.28 (#43972)snehring1-0/+3
* minimap2: adding version 2.28 * minimap2: adding maintainer --------- Signed-off-by: Shane Nehring <snehring@iastate.edu>
2024-05-02py-fenics-ffcx: update to v0.8 (#43929)Garth N. Wells2-2/+6
* Update FFCx and UFCx to v0.8 * Syntax fix
2024-05-02variorum: add branch dev and version 0.8.0 (#43829)Stephanie Labasan Brink1-0/+2
* variorum: add branch dev and version 0.8.0 * formatting
2024-05-02grads: fix libpng and g2c deps (#43909)Alex Richert1-2/+6
* grads: fix libpng and g2c deps * Update package.py * [@spackbot] updating style on behalf of AlexanderRichert-NOAA
2024-05-02rdma-core: add versions 51.0, 50.0 and 49.1 (#43926)Richard Berger1-0/+3
2024-05-02mold: add new versions (#43931)Sajid Ali1-0/+4
2024-05-02spectre: add versions, update constraints (#43936)Nils Vu1-4/+33
2024-05-02Update prod-util recipe (#43940)Alex Richert1-3/+16
* update prod-util recipe * [@spackbot] updating style on behalf of AlexanderRichert-NOAA
2024-05-02g2tmpl: add v1.12.0 (#43941)Alex Richert1-0/+1
2024-05-02update grib-util recipe (#43939)Alex Richert1-0/+3
2024-05-02Celeritas: new version 0.4.3 (#43949)Seth R. Johnson1-0/+1
2024-05-02rust: add conflict for older GCC (#43958)Adam J. Stewart1-0/+3
2024-05-02libEnsemble: add v1.3.0 (#43944)Stephen Hudson1-1/+2
2024-05-02e4s ci: add py-amrex (#43904)eugeneswalker5-0/+5
2024-05-02libc: detect ARM flavor (#43959)jdomke1-3/+3
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2024-05-02Accept later pythons for tau@2.33+ (#43911)wspear1-4/+6
* Accept later pythons for tau@2.33+ * separate forward compat bounds
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