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2024-02-12flux-core: drop czmq,jsonschema requirements for recent versions (#42560)Mark Grondona1-2/+2
Problem: Older versions of the flux-core package require czmq and jsonschema, but these dependencies have been dropped in recent versions. Add `when=` arguments to drop these requirements for the appropriate versions of flux-core.
2024-02-12libuv: update compiler requirements (#42576)Julien Cortial1-0/+8
2024-02-12py-lightning: add v2.2.0 (#42577)Adam J. Stewart1-3/+6
2024-02-12lammps: add v20240207 (#42587)Richard Berger1-1/+2
* lammps: correct license LAMMPS has always been GPL-2.0 only. The clarification was made here: https://github.com/lammps/lammps/commit/9a8ac23663027f319c98ed4a08d4cda55faec606
2024-02-12pika: add v0.22.2 (#42617)Mikael Simberg1-0/+1
2024-02-12orca: added new versions (#38822)Sebastian Ehlert2-21/+64
2024-02-12freexl: add v2.0.0 (#42574)Sinan1-0/+4
Co-authored-by: sbulut <sbulut@3vgeomatics.com>
2024-02-12xmlf90: add version and fix for fujitsu compiler (#42305)kinagaki-fj2-8/+26
2024-02-12blitz: fix for fujitsu compiler (#42307)kinagaki-fj2-0/+44
Co-authored-by: m-shunji <m.shunji@fujitsu.com>
2024-02-12raylib: add new package (#42594)George Malerbo1-0/+31
2024-02-12coretuils: add v9.4 (#42596)Alec Scott1-0/+1
2024-02-12curl: add v8.6.0 (#42597)Alec Scott1-0/+1
2024-02-12Fix for tirpc variable in libdap4 (#42511)Brian Vanderwende1-1/+1
2024-02-12Sleef: fix build on macOS arm64, add test support (#42583)Adam J. Stewart2-23/+32
2024-02-12bfs: add v3.1 (#42595)Alec Scott1-0/+2
2024-02-12lwgrp: add autotools deps when building @main (#42564)Elsa Gonsiorowski, PhD1-0/+6
2024-02-12conduit: add v0.9.1 (#42510)Cyrus Harrison1-1/+6
2024-02-12sirius: fix self-referential dependencies (#42552)Massimiliano Culpo1-13/+16
2024-02-12spla: fix self-referential dependencies (#42553)Massimiliano Culpo1-4/+4
2024-02-12glab: add v1.36.0 (#42610)Alec Scott1-0/+1
2024-02-12xz: add v5.4.6 & v5.4.5 (#42612)Alec Scott1-0/+2
2024-02-12go: add v1.22.0 (#42611)Alec Scott2-1/+14
2024-02-12nvpl-lapack: fix versioning and add missing dependency (#42599)Alberto Invernizzi1-2/+10
* fix wrong versioning use doc version and not the one extrapolated from the path (i.e. 0.2.0.1) * nvpl-lapack requires nvpl-blas propagate matching variants to nvpl-blas dependency Co-authored-by: albestro <albestro@users.noreply.github.com>
2024-02-12yosys: add v0.38 (#42616)Dave Keeshan1-0/+1
2024-02-11py-immutables: fix building, add new versions (#42530)Maciej Wójcik1-0/+5
* py-immutables: fix building, add new versions * Explain constraint * py-immutables: Wrap line
2024-02-11fenicsx: deprecate older versions (#42613)Garth N. Wells6-30/+66
* Deprecate FEniCSx packages * Format files * Simplification
2024-02-11py-configargparse: add new versions (#42533)Maciej Wójcik1-2/+4
* py-configargparse: add new versions * py-configargparse: Remove unnecessary constraint
2024-02-11Update package versions: RADICAL-Cybertools (RE, RG, RP, RS, RU) (#41997)Mikhail Titov5-81/+328
* rct: update packages (RE, RG, RP, RS, RU) with new versions * rct: updated style * rct: 1.46 release * rct: RP 1.46.1 (hotfix applied) * rct: deprecated old versions * Update var/spack/repos/builtin/packages/py-radical-entk/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-radical-pilot/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-radical-saga/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * rct: brought back dependencies for deprecated versions * rct: RP hotfix release 1.46.2 * rct: new stack release 1.47.0 --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-02-11py-gpy: added +plotting variant (#42588)Alex Leute1-0/+6
Co-authored-by: Alex C Leute <aclrc@rit.edu>
2024-02-11libEnsemble: add v1.2.0 (#42591)Stephen Hudson1-1/+3
2024-02-11py-versioneer-518: add a workaround (#42534)Maciej Wójcik1-0/+4
2024-02-11py-deeptools: add 3.5.3 (#39951)George Young1-16/+8
* py-deeptools: add 3.5.3 * switching tp pypi * removing patch for tests --------- Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2024-02-11Add pre-commit 3.6.0 (#42404)Eric Berquist1-0/+2
* Add pre-commit 3.6.0 * pre-commit 3.6.0 drops support for Python <3.9
2024-02-11py-ucsf-pyem: updating to commit e92cd4d (#42428)George Young2-12/+30
* py-ucsf-pyem: updating to commit e92cd4d * py-pyfftw: updating to @0.13:1 * py-ucsf-pyem: correcting install of scripts * Upper limits Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Upper limits Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * updates from github review --------- Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-02-11new builtin package: py-simpletraj (#42460)Dani1-0/+23
* new builtin package: py-simpletraj * long line splitted in two for the style test * removed trailing whitespace for the style test
2024-02-11[oneapi]: make headers match oneapi vars.sh (#42614)Robert Cohn5-13/+38
* [oneapi]: make headers match oneapi vars.sh * update * update
2024-02-10gromacs: add new version (#42609)Maciej Wójcik1-0/+1
2024-02-10openmpi: add 5.0.2 (#42568)Howard Pritchard1-2/+5
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2024-02-10mfem: fix self-referential dependencies (#42487)Massimiliano Culpo1-43/+28
2024-02-10viennarna package: add v2.6.4 (#42606)snehring1-0/+2
2024-02-09fzf package: add v0.46.1 (#42603)Alec Scott1-5/+4
* fzf: add v0.46.1 * Standardize vim plugin install
2024-02-09gh package: add v2.43.1 (#42604)Alec Scott1-0/+4
* gh: add v2.43.1 * gh: fix go dependency versions
2024-02-09libsixel: add new package (#40031)James Taliaferro1-0/+42
* add new package libsixel * reorder to group variants and dependencies together * Switch to using source from fork The original developer of libsixel, Hayaki Saito (@saitoha), disappeared in early 2020 and has not updated the repository or been seen since. However, a fork of the project has been created at libsixel/libsixel, and that fork has been getting much more regular updates. In this commit I switch the package to using the better-maintained, now apparently canonical fork of the project. That project switched the build system from autotools to Meson, so much of the build arguments code needed to be rewritten. The newest official release also contained an error in meson.build which would break on newer versions of Meson. That error only applied to the libjpeg and libpng variants, though, so I switched the default to use libgd which has broader format support anyway. * blacken * broke description into multiple lines * allow libjpeg, etc to be loaded automatically
2024-02-09Resolve unzip build failure with %oneapi (#42593)Chris Marsh1-4/+5
* apply patch to all compilers as per spack/issues/42007 * [@spackbot] updating style on behalf of Chrismarsh * Resolve flake8 style issue from spackbot * fix flake8 trailing whitespace --------- Co-authored-by: Chrismarsh <Chrismarsh@users.noreply.github.com>
2024-02-09hooks: remove 7 unused hooks (#42575)Harmen Stoppels4-120/+12
These 7 hooks were not used. - Six of them related to install phases were unused after `spack` `monitor` was removed, and the code seems to have bit rotten as there were reports they were not (always?) triggered when they should. - The post environment one was made redundant after spack install for environment started following the common code path for generating module files in #42147. It should not be a breaking change to remove, since users cannot define hooks in extensions, they would have to fork Spack. If we ever _were_ to make those hooks extendable outside of core Spack, it would also be better to start with fewer rather than more, cause everything you expose gets relied upon... Removing those also allows us to rethink what hooks we really need, and in particular it seems like we need a hook that runs post install also when the spec is inserted into the database.
2024-02-09ASP-based solver: fix issue with conditional requirements and trigger ↵Massimiliano Culpo4-0/+92
conditions (#42566) The lack of a rule to avoid enforcing requirements on multi-valued variants, when the condition activating the environment was not met, resulted in multiple optimal solutions. The fix is to prevent imposing a requirement if the when= rule activating it is not met.
2024-02-09sperr: add v0.8.1 (#42506)Samuel Li1-2/+4
2024-02-09Allow `+` in module file names (#41999)simonLeary421-1/+1
2024-02-09dd4hep: remove self-referential dependencies (#42483)Massimiliano Culpo1-1/+1
This shouldn't be an issue, but express the self-reference with a conflict.
2024-02-09docs: overhaul module_file_support.rst (#42585)Harmen Stoppels1-184/+222
The section was highly outdated as it referred to old defaults, and failed to mention `hide_implicits: true`. This commit restructures it, moves some deeply nested sections a level up, and promotes `hide_implicits: true` + `autoload: direct` before talking about `exclude`.