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* exawind: updates to package to allow mixed device
* Style.
* Remove ninja variants.
* Add conflict for amr-wind+hypre with mixed device.
* Relax amr-wind~hypre requirement.
* Move runtime variables to nalu-wind.
* Update suggestions.
* Remove umpire.
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* add latest versions and correct waves2amr details
* update commit associated with v2.1.0
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* ML CI: update image
* Use main branch
* Use tagged version
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Set MPI_C_COMPILER etc. env vars when building with fujitsu-mpi, which
override CMake logic. Without using these variables to explicitly
request the Fujitsu MPI wrappers, the builtin CMake logic is unwilling
to use these wrappers unless the Fujitsu compiler is used, but they
should be used for %clang as well.
This avoids patching CMake module files like in #16864, primarily to
avoid the possibility of altering behavior for specs that do not use
%fj or ^fujitsu-mpi.
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which should be more generic
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* gaudi: upstream patch when @38.1 for missing #include <list>
* gaudi: apply list patch for all versions
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Co-authored-by: Mikael Simberg <simbergm@cscs.ch>
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* r-ggplot2: v3.5.1, r-haven: v2.5.4, r-jsonlite: v1.8.8, r-pkgload: v1.3.4, r-vctrs: v0.6.5
* r-scales: v1.3.0
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* Add openfoam to aws-pcluster-neoverse_v1 stack
* Add more apps to aws-pcluster-x86_64_v4 stack
* Remove WRF while hdf5 cannot build in buildcache at the moment
* Update comment
* Add more apps for aws-pcluster-neoverse_v1 stack
* Remove apps that currently do not build
* Disable those packages that won't build
* Modify syntax such that correct cflags are used
* Changing syntax again to what works with other packages
* Fix overriding packages.yaml entry for gettext
* Use new `prefer` and `require:when` clauses to clarify intent
* Use newer spack version to install intel compiler
This removes the need for patches and makes sure the `prefer` directives in
`package.yaml` are understood.
* `prefer` not strong enough, need to set compilers
* Revert "Use newer spack version to install intel compiler"
This reverts commit ecb25a192cc430ca946415108847d637b4000795.
Cannot update the spack version to install intel compiler as this changes the
compiler hash but not the version. This leads to incompatible compiler paths. If
we update this spack version in the future make sure the compiler version also updates.
Tested-by: Stephen Sachs <stesachs@amazon.com>
* Remove `prefer` clause as it is not strong enough for our needs
This way we can safely go back to installing the intel compiler with an older
spack version.
* Prefer gcc or oneapi to build gettext
* Pin gettext version compatible with system glibc-headers
* relax gettext version requirement to enable later versions
* oneapi cannot build older gettext version
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* whizard: Add a patch to fix builds with pythia8 >= 8.310
* Add whizard 3.1.4 and update accordingly
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Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
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* octave: use pcre2 for @8:
* Add 'pcre2' variant to octave to control pcre vs. pcre2
* Update var/spack/repos/builtin/packages/octave/package.py
Co-authored-by: Alec Scott <hi@alecbcs.com>
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Co-authored-by: Alex Richert <alexander.richert@noaa.gov>
Co-authored-by: Alec Scott <hi@alecbcs.com>
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* fastjet: Add a cxxstd variant
* Use f-strings
* Add multi=False
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Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
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* clang: support cxx20_flag and cxx23_flag
* clang: coverage test cxx{}_flag and c{}_flag additions
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These changes were added to the release branch but did not make it onto `develop`.
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Apparently urllib can throw a range of different exceptions:
1. HTTPError
2. URLError with e.reason set to the actual exception
3. TimeoutError from getresponse, which is not wrapped
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* New package: qpdf
* Update var/spack/repos/builtin/packages/qpdf/package.py
Co-authored-by: Alec Scott <hi@alecbcs.com>
* Fix format of cmake_args
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Co-authored-by: Alec Scott <hi@alecbcs.com>
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* archive: relative links only
Ensure all links written into tarfiles generated from Spack prefixes do not contain symlinks pointing outside the prefix
* binary_distribution: limit extraction to prefix
Ensure files extracted from spackballs are not links pointing outside of the prefix
* Ensure rpaths are properly set on Windows
* hard error on extraction of absolute links
* refactor for non link-modifying approach
* Restore tarball extraction to original impl
* use custom readlink
* cleanup symlink module
* make lstrip
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* Quote python for shlex
* Remove python path quoting patch
* spack env: Allow `C` "protocol" for config_path
When running spack on windows, a path beginning with `C://...` is a valid path.
* Remove makefile from ci rebuild
* GPG use llnl.util.filesystem.getuid
* Cleanup process_command
* Remove unused lines
* Fix tyop in encode_path
* Double quote arguments
* Cleanup process_command
* Pass cdash args with =
* Escape parens in CMD script
* escape parens doesn't only apply to paths
* Install deps
* sfn prefix
* use sfn with libxml2
* Add hash to dep install
* WIP
* REview
* Changes missed in prior review commit
* Style
* Ensure we handle Windows paths with config scopes
* clarify docstring
* No more MAKE_COMMAND
* syntax cleanup
* Actually correct is_path_url
* Correct call
* raise on other errors
* url2path behaves differently on unix
* Ensure proper quoting
* actually prepend slash in slash_hash
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Co-authored-by: Ryan Krattiger <ryan.krattiger@kitware.com>
Co-authored-by: Mike VanDenburgh <michael.vandenburgh@kitware.com>
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Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
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Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
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* Remove autoreconf section that was causing issues with libtool mismatch. Fixes issue #43498
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* dla-future: Add 0.4.1
* Use ninja as generator in dla-future
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Co-authored-by: Stephen Sachs <stesachs@amazon.com>
Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
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* flux-sched: set the version if the ver file is missing
problem: flux-sched needs a version, it normally gets this from a
release tarball or from git tags, but if using a source archive or a git
clone without tags the version is missing
solution: set the version through cmake based on the version spack sees
when the version file is missing
* Update var/spack/repos/builtin/packages/flux-sched/package.py
Co-authored-by: Alec Scott <hi@alecbcs.com>
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Co-authored-by: Alec Scott <hi@alecbcs.com>
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* miniforge3: add new version with mamba installation
* fix styling
* update maintainers
* Fix variant directive ordering
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When an include filter on externals is present, implicitly
include libcs.
Also, do not penalize deprecated versions if they come
from externals.
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* pythia8: add a cxxstd variant
* Add multi=False, fix regexp
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Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
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