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2022-10-06py-docutils: add 0.19 (#32814)Manuela Kuhn1-1/+3
2022-10-06e4s ci: add charliecloud (#32990)eugeneswalker1-0/+2
2022-10-06mlirmiopen: update the SHA for 5.2.1 release (#33049)Sreenivasa Murthy Kolam1-1/+1
2022-10-06docs: fix deprecated use of install_tree (#33004)Harmen Stoppels1-3/+3
2022-10-06Add checksum for py-markupsafe 2.1.1 (#33003)iarspider1-0/+2
2022-10-06Add checksum for py-avro 1.11.1 (#32979)iarspider1-0/+4
2022-10-06Add checksum for py-autopep8 1.7.0, py-pycodestyle 2.9.1 (#32978)iarspider2-6/+9
2022-10-06hpcviewer: add v2022.10 (#33041)Mark W. Krentel1-6/+13
2022-10-06build(deps): bump actions/checkout from 3.0.2 to 3.1.0 (#32998)dependabot[bot]7-25/+25
2022-10-06dd4hep: add v1.23 (#32968)Wouter Deconinck1-0/+1
Release notes at https://github.com/AIDASoft/DD4hep/releases/tag/v01-23
2022-10-06Add checksum for py-soupsieve 2.3.2.post1 (#32980)iarspider1-2/+6
* Add checksum for py-soupsieve 2.3.2.post1 * Update package.py * Update var/spack/repos/builtin/packages/py-soupsieve/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-10-06New package: py-scanpy (#32565)Jen Herting1-0/+40
* [py-scanpy] New package * [py-scanpy] Added types * [py-scan] reworked dependencies * [py-scanpy] flake8 * [py-scanpy] update import * [py-scanpy] fixed minor issues Co-authored-by: James A Zilberman <jazrc@rit.edu>
2022-10-06Add checksum for py-histoprint 2.4.0 (#33017)iarspider1-0/+1
2022-10-06Add checksum for py-hepdata-lib 0.10.1, py-hepdata-validator 0.3.3 (#33018)iarspider2-3/+12
* Add checksum for py-hepdata-lib 0.10.1, py-hepdata-validator 0.3.3 * Update package.py * Update package.py * Update package.py * Update package.py
2022-10-06flux-core: add v0.44.0 (#33039)Vanessasaurus1-0/+1
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2022-10-06dock: fix compilation with gcc10+, add dep (#33034)snehring1-0/+11
2022-10-06h5bench: update version (#33000)Jean Luca Bez1-8/+13
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-10-06New package: py-pprintpp (#30764)Jen Herting1-0/+17
* New package: py-pprintpp * [py-pprintpp] added dependency on setuptools Co-authored-by: Viv Eric Hafener <vehrc@sporcbuild.rc.rit.edu>
2022-10-06cuda: add v11.8.0 (#33027)Andrew W Elble2-1/+24
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
2022-10-06flux-sched: add v0.25.0 (#33038)Vanessasaurus1-0/+1
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2022-10-06add blt 0.5.2 (#33029)Chris White1-0/+1
2022-10-05New package: py-pyassimp (#30762)Jen Herting1-0/+19
* New package: py-pyasimp * Cleaned up dependencies * Fixed liked issue * Fixed linked issue * [py-pyassimp] depends on assimp * [py-pyassimp] added dependency on py-setuptools * [@spackbot] updating style on behalf of qwertos Co-authored-by: Viv Eric Hafener <vehrc@sporcbuild.rc.rit.edu> Co-authored-by: qwertos <qwertos@users.noreply.github.com>
2022-10-05python: don't accidentally link to system db libs (#33007)Harmen Stoppels1-1/+1
2022-10-05salmon: new version 1.9.0 (#33035)snehring1-0/+7
2022-10-05pfunit: fix @4: ~openmp (#33024)Charles Ferenbaugh1-1/+2
2022-10-05Add checksum for py-threadpoolctl 3.1.0 (#33012)iarspider1-2/+4
* Add checksum for py-threadpoolctl 3.1.0 * Update package.py
2022-10-05Add checksum for py-distlib 0.3.6 (#33009)iarspider1-1/+12
* Add checksum for py-distlib 0.3.6 * Update package.py * Update package.py * Update package.py
2022-10-05Package jsonnet: change sha256sum to sha256 for version hash (#33031)dlkuehn1-2/+2
Co-authored-by: David Kuehn <las_dkuehn@iastate.edu>
2022-10-05eospac: support version 6.5.5 (#33023)Daryl W. Grunau1-1/+7
Co-authored-by: Daryl W. Grunau <dwg@lanl.gov>
2022-10-05canu: new version 2.2 (#32999)snehring1-8/+9
2022-10-05add version 4.2.1 of R (#32993)Glenn Johnson1-0/+2
2022-10-05py-matplotlib: add v3.6.0, new backends (#32697)Adam J. Stewart2-58/+134
* py-matplotlib: add v3.6.0, new backends * [@spackbot] updating style on behalf of adamjstewart * Undo conditional variant hack * Update dependencies Co-authored-by: adamjstewart <adamjstewart@users.noreply.github.com>
2022-10-05Fix wonton CMake config to not break host codes (#33026)Charles Ferenbaugh3-0/+60
2022-10-05py-pyfr: add v1.15.0, explicitly set env variables for dependencies (#32964)MichaelLaufer3-8/+28
* Update to PyFR v1.15.0 * allow unsupported compilers for cuda * update requirement for py-gimmik version * update requirement for cuda version * update versions, style fix * lib directory changed, style fixes * PYFR_METIS_LIBRARY_PATH set
2022-10-05e4s ci: add gotcha cpu (#32989)eugeneswalker1-1/+1
2022-10-05py-torch-nvidia-apex: ~cuda does not build (#32939)Adam J. Stewart1-1/+4
2022-10-05OpenBLAS 0.3.21: w/o Fortran (#32398)Axel Huebl2-11/+30
There is a new OpenBLAS release out that can be compiled w/o a Fortran compiler. macOS XCode developers, rejoice. Maybe at some point Spack becomes a package manager that can be used without using another package manager (to get gfortran) :tada: phist: add conflict on reference netlib-lapack due to API change in lapack.h Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2022-10-05e4s ci: add caliper +cuda (#32992)eugeneswalker1-1/+1
2022-10-05e4s ci: enable caliper cpu (#32988)eugeneswalker1-1/+1
2022-10-05Add checksum for py-flit 3.7.1 (#33013)iarspider1-0/+2
2022-10-05e4s: add omega-h +cuda (#32156)eugeneswalker1-0/+1
2022-10-05e4s ci: add unifyfs (#32991)eugeneswalker1-1/+1
2022-10-05Make hwloc both CudaPackage and ROCmPackage (#31334)Wileam Y. Phan1-4/+3
* Make hwloc both CudaPackage and ROCmPackage * Remove redundant variants
2022-10-05Add checksum for py-arrow 1.2.3 (#33005)iarspider1-0/+1
2022-10-05Add checksum for py-pydantic 1.10.2 (#33006)iarspider1-0/+3
2022-10-05Add checksum for py-rich 12.5.1 (#33008)iarspider1-4/+7
2022-10-05Add aws-ofi-nccl library (#32906)Brian Van Essen1-0/+61
* Added a package for the aws-ofi-nccl plug-in from to enable NCCL to use libfabric communication library as a network provider. Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2022-10-05Optimize concurrent misc_cache provider index rebuild (#32874)Jordan Galby1-2/+10
When concurrent misc_cache provider index rebuilds happen, try to rebuild it only once, so we don't exceed misc_cache lock timeout. For example, when using `spack env depfile`, with no previous misc_cache, running `make -f depfile -j8` could run at most 8 concurrent `spack install` locking on misc_cache to rebuild the provider index. If one rebuild takes 30s, before this fix, the "worst" lock could wait up to 30s * 7, easily exceeding misc_cache lock timeout. Now, the "worst" lock would take 30s * 1 + ~1s * 6.
2022-10-05autotools: Filter libtools when building with dpcpp (#32876)Chris MacMackin1-1/+9
Due to a [known issue](https://community.intel.com/t5/Intel-oneAPI-Data-Parallel-C/dpcpp-and-GNU-Autotools/m-p/1296985) with dpcpp, autotool-based builds that try to use it will fail because they try to link against temporary files that no longer exist. This commit filters those files out of the libtools script so that linking can work properly.
2022-10-05Add checksums for Rivet 3.1.7 and YODA 1.9.7 and fastjet 3.4.0 (#32917)iarspider3-1/+10
* Add checksums for Rivet 3.1.7 and YODA 1.9.7 * Add checksum for fastjet 3.4.0 * Add v3.1.7b... ... in which version requirement for autoconf was lowered to 2.68
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