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Bumps [flake8](https://github.com/pycqa/flake8) from 6.0.0 to 6.1.0.
- [Commits](https://github.com/pycqa/flake8/compare/6.0.0...6.1.0)
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updated-dependencies:
- dependency-name: flake8
dependency-type: direct:production
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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Bumps [sphinx-design](https://github.com/executablebooks/sphinx-design) from 0.4.1 to 0.5.0.
- [Release notes](https://github.com/executablebooks/sphinx-design/releases)
- [Changelog](https://github.com/executablebooks/sphinx-design/blob/main/CHANGELOG.md)
- [Commits](https://github.com/executablebooks/sphinx-design/compare/v0.4.1...v0.5.0)
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updated-dependencies:
- dependency-name: sphinx-design
dependency-type: direct:production
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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* Prefix conflict messages with package name
This patch prefixes all conflict messages with the package name to
alleviate what was otherwise a very manual process. Note that this patch
is a one line change but has a fairly outsized impact.
* same for requires directive
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Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
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Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
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(#38239)" (#39354)
This reverts commit 3453259c98c7d39655b8495ca2e3677c51284b43.
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Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au>
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Bumps [urllib3](https://github.com/urllib3/urllib3) from 2.0.3 to 2.0.4.
- [Release notes](https://github.com/urllib3/urllib3/releases)
- [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst)
- [Commits](https://github.com/urllib3/urllib3/compare/2.0.3...2.0.4)
---
updated-dependencies:
- dependency-name: urllib3
dependency-type: direct:production
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
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Enable some already-supported tests (no changes to staging logic).
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* picard: add variant with jvm arguments
* fix variant and update wrapper script
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Signed-off-by: Pablo <pablo.aledo@seqera.io>
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* AMReX: 23.06+ Multi-Dim Support
This updated the Spack package to allow to install AMReX, modules of
AMReX in E4S deployments and dependent packages with support for
multiple dimensions. Due to an upstream change in AMReX, we do not
longer need to ship three, binary incompatible package variants.
* [E4S] oneAPI AMReX < 23.06 Variant
Work-around the auto-concretization to the multi-dim of `dimensions`,
which only in 23.06+ became a multi-variant.
* e4s cray rhel ci: temporarily disable amrex build until spurious ci failure can be resolved
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Co-authored-by: eugeneswalker <eugenesunsetwalker@gmail.com>
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* release brahma 0.0.1
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Signed-off-by: Andrey Parfenov <andrey.parfenov@intel.com>
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Bumps [black](https://github.com/psf/black) from 23.1.0 to 23.7.0.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/23.1.0...23.7.0)
---
updated-dependencies:
- dependency-name: black
dependency-type: direct:production
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
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* Add a git dependency
* Add the dependency only for building
* Change dependency to build and run
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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The package won't compile with newer compilers because warnings
are converted to errors. Hence, disable such conversion.
Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au>
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Introduces a new virtual zlib-api, which replaces zlib in most packages.
This allows users to switch to zlib-ng by default for better performance.
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(#39333)
With the previous version of the recipe I would get linking errors due
to missing `-lfftw3f`.
Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au>
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apply upstream patch
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Signed-off-by: Pablo <pablo.aledo@seqera.io>
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This also makes `spack bootstrap status` exit 1 if some dependency is missing
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Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au>
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Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
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Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au>
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Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
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Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au>
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Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au>
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(#39339)
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CVE-2023-29405 (#39149)
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* fastani: adding version 1.34 and changing build_system
* py-gtdbtk: adding version 2.3.2
* fastani: adding requested changes
* py-gtdbtk: adding requested changes
* fastani: remove conditional
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