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2023-08-10Revert "Spec versions: allow `git.` references for branches with `/` ↵Harmen Stoppels3-36/+3
(#38239)" (#39354) This reverts commit 3453259c98c7d39655b8495ca2e3677c51284b43.
2023-08-10ncview: change URL for source code (#39321)Cristian Di Pietrantonio1-1/+7
Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au>
2023-08-10build(deps): bump urllib3 from 2.0.3 to 2.0.4 in /lib/spack/docs (#39002)dependabot[bot]1-1/+1
Bumps [urllib3](https://github.com/urllib3/urllib3) from 2.0.3 to 2.0.4. - [Release notes](https://github.com/urllib3/urllib3/releases) - [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst) - [Commits](https://github.com/urllib3/urllib3/compare/2.0.3...2.0.4) --- updated-dependencies: - dependency-name: urllib3 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-08-09edm4hep: add edm4hep to PYTHONPATH (#38407)Juan Miguel Carceller1-0/+3
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2023-08-09Windows: enable more stage tests (#36834)markus-ferrell1-8/+9
Enable some already-supported tests (no changes to staging logic).
2023-08-09picard: add variant with jvm arguments (#39204)pabloaledo2-1/+76
* picard: add variant with jvm arguments * fix variant and update wrapper script --------- Signed-off-by: Pablo <pablo.aledo@seqera.io>
2023-08-09libhio: package update for new sha256 checksum for v1.4.1.5 (#38696)Jennifer Green1-1/+1
2023-08-09emacs: Add v29.1 (#39147)Alec Scott1-0/+1
2023-08-09AMReX: 23.06+ Multi-Dim Support (#37695)Axel Huebl3-4/+20
* AMReX: 23.06+ Multi-Dim Support This updated the Spack package to allow to install AMReX, modules of AMReX in E4S deployments and dependent packages with support for multiple dimensions. Due to an upstream change in AMReX, we do not longer need to ship three, binary incompatible package variants. * [E4S] oneAPI AMReX < 23.06 Variant Work-around the auto-concretization to the multi-dim of `dimensions`, which only in 23.06+ became a multi-variant. * e4s cray rhel ci: temporarily disable amrex build until spurious ci failure can be resolved --------- Co-authored-by: eugeneswalker <eugenesunsetwalker@gmail.com>
2023-08-09Release brahma 0.0.1 (#39345)Hariharan Devarajan1-0/+28
* release brahma 0.0.1
2023-08-09add info about devito and qe for intel env (#39357)Andrey Parfenov1-0/+2
Signed-off-by: Andrey Parfenov <andrey.parfenov@intel.com>
2023-08-09Fix package.py error handling bug (#39017)Jordan Galby1-3/+2
2023-08-09build(deps): bump black from 23.1.0 to 23.7.0 in /lib/spack/docs (#38982)dependabot[bot]1-1/+1
Bumps [black](https://github.com/psf/black) from 23.1.0 to 23.7.0. - [Release notes](https://github.com/psf/black/releases) - [Changelog](https://github.com/psf/black/blob/main/CHANGES.md) - [Commits](https://github.com/psf/black/compare/23.1.0...23.7.0) --- updated-dependencies: - dependency-name: black dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-08-09caliper: deprecate old versions (#39352)Massimiliano Culpo1-12/+24
2023-08-09dd4hep: fix setting LD_LIBRARY_PATH (#38015)Juan Miguel Carceller1-2/+1
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2023-08-09py-setuptools-scm: add a git dependency (#36770)Juan Miguel Carceller1-0/+2
* Add a git dependency * Add the dependency only for building * Change dependency to build and run Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-08-09package import: remove magic import line (#39183)Harmen Stoppels6-43/+48
2023-08-09cpmd: convert to new stand-alone test process (#35744)Tamara Dahlgren1-2/+6
2023-08-09libzmq: do not treat warnings as errors during compilation. (#39325)Cristian Di Pietrantonio1-0/+5
The package won't compile with newer compilers because warnings are converted to errors. Hence, disable such conversion. Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au>
2023-08-09Fix suffix of tab completion scripts (#39154)Adam J. Stewart6-8/+9
2023-08-09zlib-api: new virtual with zlib/zlib-ng as providers (#37372)Harmen Stoppels442-549/+840
Introduces a new virtual zlib-api, which replaces zlib in most packages. This allows users to switch to zlib-ng by default for better performance.
2023-08-09cxxopts: add v3.1.1 (#37977)Alec Scott1-0/+1
2023-08-09rclone: add v1.63.1 and remove previously deprecated versions (#39148)Alec Scott1-38/+4
2023-08-09Fixed bugs discovered in conflicts directives (#39338)Massimiliano Culpo9-14/+8
2023-08-09Changes the way MPICC is set (#39327)Cristian Di Pietrantonio1-7/+2
2023-08-09nwchem: make sure to link both single and double precision fftw libraries. ↵Cristian Di Pietrantonio1-1/+1
(#39333) With the previous version of the recipe I would get linking errors due to missing `-lfftw3f`. Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au>
2023-08-09protobuf: fix build for 3.21 on Centos 8 (#39162)Martin Aumüller1-0/+7
apply upstream patch
2023-08-09fq: add new package (#39205)pabloaledo1-0/+23
Signed-off-by: Pablo <pablo.aledo@seqera.io>
2023-08-09containerize: ensure bootstrap images contain all system dependencies (#36818)Jonathon Anderson9-3/+27
This also makes `spack bootstrap status` exit 1 if some dependency is missing
2023-08-09idg: add new package (#39316)Cristian Di Pietrantonio1-0/+28
Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au>
2023-08-09miniocli: add new package (#39318)Cristian Di Pietrantonio1-0/+49
Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au> Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-08-09esmf: specify build dependency on CMake when using internal ParallelIO (#39347)Gerhard Theurich1-0/+1
2023-08-09Spec versions: allow `git.` references for branches with `/` (#38239)Peter Scheibel3-3/+36
2023-08-09py-lightly: add v1.4.15 (#39348)Adam J. Stewart1-0/+2
2023-08-09py-torchmetrics: add v1.0.3 (#39349)Adam J. Stewart1-0/+1
2023-08-09ior: add lustre variant (#39320)Cristian Di Pietrantonio1-0/+15
Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au>
2023-08-09hypre: fix typo in --with-sycl option. (#39351)Jon Rood1-1/+1
2023-08-09caliper: add KOKKOS variant. (#39312)Cristian Di Pietrantonio1-0/+2
Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au> Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-08-09beast2: add dependency on libbeagle. (#39311)Cristian Di Pietrantonio1-0/+3
Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au>
2023-08-09chgcentre: fix compilation error by using explicit casting (#39315)Cristian Di Pietrantonio2-0/+17
Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au>
2023-08-09Push conflict between rocm and blt down to packages that actually use blt ↵Massimiliano Culpo8-5/+11
(#39339)
2023-08-08go: add v1.20.6 and v1.19.11, deprecate previous versions due to ↵Alec Scott1-39/+17
CVE-2023-29405 (#39149)
2023-08-08Update py-gtdbtk to 2.3.2 (#39296)snehring2-7/+12
* fastani: adding version 1.34 and changing build_system * py-gtdbtk: adding version 2.3.2 * fastani: adding requested changes * py-gtdbtk: adding requested changes * fastani: remove conditional
2023-08-08trilinos: Add version 14.4.0 (#39340)Paul Kuberry1-0/+1
2023-08-08[py-model-index] new package (#39301)Jen Herting1-0/+21
2023-08-08[py-opendatalab] New package (#39302)Jen Herting1-0/+26
2023-08-08[py-linkify-it-py] New package (#39305)Jen Herting1-0/+21
* [py-linkify-it-py] New package * [py-linkify-it-py] Added version 1.0.3
2023-08-08e4s ci: add libpressio (#34222)eugeneswalker3-0/+8
* e4s ci: add libpressio * libpressio ~cuda, +cuda: add +mgard
2023-08-08Ensure that all variants have a description (#39025)Adam J. Stewart63-167/+341
* Ensure that all variants have a description * Update mock packages too * Fix test invocations * Black fix * mgard: update variant descriptions * flake8 fix * black fix * Add to audit tests * Relax type hints * Older Python support * Undo all changes to mock packages * Flake8 fix
2023-08-08Name clash error message include hash of clashing packages (#39234)simonLeary421-1/+2
Co-authored-by: Simon <simonleary@umass.edu>
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