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Fixes a bug where Spack did not generate module files of non-roots during
spack install with an active environment.
The reason being that Environment.new_installs only contained roots.
This PR:
Drops special casing of automatic module generation in post-install hooks
When `use_view`, compute environment variable modifications like always, and
applies a view projection to them afterwards, like we do for spack env activate.
This ensures we don't have to delay module generation until after the view is
created.
Fixes another bug in use_view where prefixes of dependencies would not be
projected -- previously Spack would only temporarily set the current spec's prefix.
Removes the one and only use of the post_env_write hook (but doesn't drop it to
make this backportable w/o changes)
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build context (#42215)
Previously `std_args` was called on non-roots in a build context, which is redundant, and also leads to issues when `std_args` expects build deps of the `pkg` to be installed.
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HPCToolkit `develop` now can optionally be built via Meson. This PR adds the `build_system=(autotools|meson)` variant and splits the build-system-dependent pieces into `AutotoolsBuilder` and `MesonBuilder`. The default is to build with `autotools`.
As of writing, the Meson is simply a wrapper around the original Autotools build, hence the build requires a native file listing install prefixes of all dependencies (which are internally mapped to `--with-{pkg}={prefix}` arguments for `./configure`). This is an unconventional but temporary state of affairs until the build system is fully ported to Meson and conventional dependency acquisition techniques like `pkg-config` and `cmake` are practically available.
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* Environments: fix environment config
* Don't change the lockfile manifest path
* Update activate's comments to tie the manifest to the configuration
* Add spec_list override method
* Remove type checking from 'activate' since already have built-in check
* Refactor global methods tied to the manifest to be in its class
* Restore Environment's 'env_subdir_path' and pass its config_stage_dir to EnvironmentManifestFile
* Restore global env_subdir_path for use by Environment and EnvironmentManifestFile
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The CUDA target should be specified at build time, otherwise
by default `autodock-gpu` will be built for compute capabilities
52, 60, 61, 70, which may cause errors on unsopported cards.
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* Add v5.0.0 to ip
* don't require test target for ip@3
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Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
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* Add missing dependency
* Change dependency to virtual package
As suggested :)
---------
Co-authored-by: James Beal <jb23@sanger.ac.uk>
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Fixes #42241
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The previous link gives a 404 error.
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Currently requirements allow to express "strong preferences" and "conflicts" from
configuration using a convoluted syntax:
```yaml
packages:
zlib-ng:
require:
# conflict on %clang
- one_of: ["%clang", "@:"]
# Strong preference for +shared
- any_of: ["+shared", "@:"]
```
This PR adds syntactic sugar so that the same can be written as:
```yaml
packages:
zlib-ng:
conflict:
- "%clang"
prefer:
- "+shared"
```
Preferences written in this way are "stronger" that the ones documented at:
- https://spack.readthedocs.io/en/latest/packages_yaml.html#package-preferences
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`spack install` early exit behavior was sometimes convenient, except
that it had and has bugs:
1. prior bug: we didn't mark env roots of already installed specs as
explicit in the db
2. current bug: `spack install --overwrite` is ignored
So this PR simplifies by letting the installer do its thing even if
everything is supposedly installed.
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* Bump up the version for ROCm-6.0.0
* Adding patch files
* Style check failure fix
* Style check fixes
* Style check error fixes
* Patch to remove hipblas client file installation in 6.0
* Patch need to be applied on all 5.7 relases
* 6.0 update for math libs and other packages, new github url etc
* Correct package-audit failures
* Correcting shasum for rocfft patch and limiting patch in rocblas
* Reverting updates in rocprofiler-dev due to ci-gitlab failure
* Fixes for ci-gitlab failure due to disabling hip backward compatibilit
* Adding patch file to Change HIP_PLATFORM from HCC to AMD and NVCC to NVIDIA
* Use the gcnArchName inplace of gcnArch as gcnArch is deprecated from rocm-6.0.0
* Patches to fix magma and blaspp build error with rocm 6.0.0
* Patch for mfem and arborx for rocm 6.0
* Style check error fix
* Correcting style check errors
* Uodating dependent version
* Update for petsc to build with rocm 6.0
Need reverting-operator-mixup-fix-for-slate.patch for rocm 6.0
* Reverting the change in url for 2.7.4-rocm-enhanced
* hip-tensor 6.0.0 update
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No major changes, https://gitlab.cern.ch/gaudi/Gaudi/-/compare/v37r1...v37r2?from_project_id=38&straight=false
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* py-keras: add v3.0.3
* py-keras: add v3.0.4
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* acts: new version 32.0.0
No major build system changes, see [diff](https://github.com/acts-project/acts/compare/v31.2.0...v32.0.0). Summary of changes:
- updated actsvg version requirement
- MLpack dependency removed as of 32.0.0 (https://github.com/acts-project/acts/pull/2863)
* actsvg: new version 0.4.39 (new variant web)
* [@spackbot] updating style on behalf of wdconinc
---------
Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
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New bugfix version, without any major changes, https://github.com/AIDASoft/DD4hep/compare/v01-27-01...v01-27-02.
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This commit ensures that CMake packages that also have Python as a build/link dep get a couple defines for the Python path so that CMake's builtin `FindPython3`, `FindPython`, `FindPythonInterp` modules can locate Python correctly.
The main problem with those CMake modules is that they first search for Python versions known at the time of release, meaning that old CMake maybe find older system Python 3.8 even though Python 3.11 comes first in `CMAKE_PREFIX_PATH` and `PATH`.
Package maintainers can opt out of this by overriding the `find_python_hints = False` attribute in the package class.
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* Add nglview package
* Use slightly older version
* py-nglview: Correct py-versioneer version
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* py-nglview: Correct version of py-jupyter-packaging dependency
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Add py-versioneer-518 package
* py-versioneer-518: Correct version
* py-nglview: Numpy is needed during build for the tests
* py-nglview: dependency needed for tests
* py-nglview: Correct dependency types
---------
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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* py-bluepyemodel: add newer versions
* re-add license marker
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* py-toposort: Add newer versions
* snakemake: Add more recent versions with dependencies
* Typo in copyright
* Reorder dependencies, remove comments
* Whitespace
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* e4s ci: use latest intel/hpckit 2024 based image
* use latest container image: ecpe4s/ubuntu22.04-runner-amd64-oneapi-2024.0.0:2023.12.01
* comment out failing specs
* update to use patched container
* remove generalized package preference for intel-oneapi-mkl@2023
* change packages commented out
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