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2023-05-29form: add v4.3.1 (#37984)Alec Scott1-0/+1
2023-05-28tests/flibcpp: convert to new stand-alone test process (#37782)Tamara Dahlgren1-17/+12
2023-05-28patchelf: convert to new stand-alone test process (#37831)Tamara Dahlgren1-21/+12
2023-05-28gasnet: convert to new stand-alone test process (#35727)Tamara Dahlgren1-34/+41
2023-05-28hdf: convert to new stand-alone test process (#37843)Tamara Dahlgren1-76/+73
2023-05-28tests/upcxx: convert to new stand-alone test process (#37832)Tamara Dahlgren1-10/+6
Co-authored-by: Dan Bonachea <dobonachea@lbl.gov>
2023-05-28Automated deployment to update package flux-core 2023-05-04 (#37421)Vanessasaurus1-0/+1
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2023-05-28kokkos-nvcc-wrapper: Remove unnecessary dependencies (#37794)Bruno Turcksin2-4/+2
2023-05-28Kokkos: remove unused variants (#37800)Bruno Turcksin3-8/+5
2023-05-28modules: improve default naming scheme (#37808)Xavier Delaruelle4-38/+38
Change default naming scheme for tcl modules for a more user-friendly experience. Change from flat projection to "per software name" projection. Flat naming scheme restrains module selection capabilities. The `{name}/{version}...` scheme make possible to use user-friendly mechanisms: * implicit defaults (`module load git`) * extended default (`module load git/2`) * advanced version specifiers (`module load git@2:`)
2023-05-28tests/cmake: convert to new stand-alone test process (#37724)Tamara Dahlgren1-14/+25
2023-05-28build(deps): bump actions/setup-python from 4.6.0 to 4.6.1 (#37894)dependabot[bot]5-11/+11
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4.6.0 to 4.6.1. - [Release notes](https://github.com/actions/setup-python/releases) - [Commits](https://github.com/actions/setup-python/compare/57ded4d7d5e986d7296eab16560982c6dd7c923b...bd6b4b6205c4dbad673328db7b31b7fab9e241c0) --- updated-dependencies: - dependency-name: actions/setup-python dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-05-28acfl: add version 23.04.1 and fix checksums for 22.1 (#37908)Annop Wongwathanarat1-7/+41
Checksums for 22.1 need updates due to an IT incident at developer.arm.com. The package tarballs needed to be recreated.
2023-05-28whizard: Fix parallel build race condition (#37890)Thomas Madlener3-7/+41
2023-05-28tests/darshan-runtime: convert to new stand-alone test process (#37838)Tamara Dahlgren1-65/+34
2023-05-28Adding NVIDIA HPC SDK 23.5 (#37913)Filippo Spiga1-0/+14
2023-05-28copy namelist and xml to ./bin (#37933)Hao Lyu1-0/+2
2023-05-28archer: convert to new stand-alone test process (#35697)Tamara Dahlgren1-19/+10
2023-05-27tests/bolt: convert to new stand-alone test process (#35695)Tamara Dahlgren1-22/+15
* bolt: convert to new stand-alone test process * Remove redundant test_requires_compiler (so above directives)
2023-05-27tests/amrex: convert to new stand-alone test process (#35698)Tamara Dahlgren1-38/+15
* amrex: convert to new stand-alone test process * smoke->stand-alone
2023-05-27py-macs2: add 2.2.8, updated dependencies (#37944)George Young1-6/+5
* py-macs2: add 2.2.8, updated dependencies * Update package.py --------- Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-05-27py-cutadapt: add 4.4, 4.3, 4.2 versions (#37929)George Young2-8/+15
* py-cutadapt: add 4.4, 4.3, 4.2 versions * Update var/spack/repos/builtin/packages/py-cutadapt/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-cutadapt/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update package.py --------- Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-05-27Add shared and pic variants to libtiff (#37965)Alex Richert1-0/+9
* Add static-only option for libtiff * update libtiff to add pic variant * fix libtiff pic setting
2023-05-27freetype: add pic and shared variants (#37898)Alex Richert1-0/+9
2023-05-26py-multiqc: add 1.14, bump dependencies (#37946)George Young1-1/+3
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-05-26py-datalad-metadata-model: add 0.3.10 (#37937)Manuela Kuhn1-1/+1
2023-05-26py-debugpy: add 1.6.7 (#37941)Manuela Kuhn1-0/+1
2023-05-26py-distro: add 1.8.0 (#37942)Manuela Kuhn1-1/+1
2023-05-26Update melissa build (#37609)mschouler3-3/+81
* Remove deprecated package * Add up-to-date melissa builds * Remove blank lines and FIXME comments * Use directive syntax for maintainers and remove unnecessary comments * Remove unused function * Deprecate former melissa recipe * Change melissa python package name * Update setuptools and rapidjson dependencies versions * Fix mypy error * Restore rapidjson version * Variant simplification * Make variants lower case * Deprecate former omitted version * Make torch version consistent with requirement file * Fix variants definition * Fix style error --------- Co-authored-by: Marc Schouler <marc.schouler@inria.fr>
2023-05-26py-coloredlogs: add 15.0.1 and py-humanfriendly: add 10.0 (#37905)Manuela Kuhn2-1/+7
2023-05-26py-contourpy: add 1.0.7 (#37914)Manuela Kuhn1-1/+4
2023-05-26py-coverage: add 5.5 (#37922)Manuela Kuhn1-5/+2
2023-05-26Update py-pennylane ecosystem to support v0.30.0 (#37763)Lee James O'Riordan3-14/+28
* Update PennyLane ecosystem for 0.30 release * Update package dep versions * Fix formatting * Update dep versions * Remove PL hard pin and rely on PLQ to define version * Update var/spack/repos/builtin/packages/py-pennylane-lightning-kokkos/package.py Co-authored-by: Vincent Michaud-Rioux <vincent.michaud-rioux@xanadu.ai> * Convert pybind11 from build to link dep, and PL ver limit --------- Co-authored-by: Vincent Michaud-Rioux <vincent.michaud-rioux@xanadu.ai>
2023-05-26py-beautifulsoup4: add 4.12.2 (#37820)Manuela Kuhn1-3/+6
2023-05-26py-chardet: add 5.1.0 (#37879)Manuela Kuhn1-4/+3
* py-chardet: add 5.1.0 * Remove py-setuptools as run dependency
2023-05-26CI: Use relative path in default script (#36649)kwryankrattiger1-1/+1
2023-05-26picard: add 3.0.0, switch to java@17: (#37948)George Young1-1/+7
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-05-26minimap2: adding 2.26 (#37945)George Young1-0/+1
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-05-26hyphy: add 2.5.51hf, update dependencies for switch to MPI (#37938)George Young1-1/+4
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-05-26Strip inactive maintainer. (#36048)Kai Torben Ohlhus1-1/+1
2023-05-26cdo: add 2.2.0 (#37244)Brian Spilner1-0/+5
2023-05-26PMIx and PRRTe: disabled use of sphinx (#37750)Howard Pritchard2-2/+2
Related to https://github.com/spack/spack/pull/37717 No need to be rebuilding openmpi man pages and other docs in spack as it almost always is used with release tarballs. See #37717 for more details. Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2023-05-25Windows MSVC: do not set sdk version if installing sdk (#37930)John W. Parent1-1/+5
Note the win-sdk package is not installable and reports an error which instructs the user how to add it. Without this fix, a (more confusing) error occurs before this message can be generated.
2023-05-25fastp: add version 0.23.3, add build dependencies (#37931)George Young1-0/+4
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-05-25gradle:add 7.3 (#37928)Leonard-Anderson-NNL1-0/+1
Co-authored-by: Cloud User <leonardanderson@leonardander001.hzterscemazurawp3xenxzahla.bx.internal.cloudapp.net>
2023-05-25Windows: fix "spack build-env" (#37923)John W. Parent3-3/+21
"spack build-env" was not generating proper environment variable definitions on Windows; this commit updates the generated commands to succeed with batch/PowerShell.
2023-05-25update ci ml darwin keypath (#37927)eugeneswalker1-3/+3
2023-05-25Windows CI: add paraview deps nightly build (#37924)John W. Parent1-0/+31
Add a nightly job to attempt building all Paraview dependencies and upload the results to cdash. This check doesn't affect the reported build/test status of Spack. We are using this to monitor the state of Windows support while working on more-robust checks (eventually the Windows build will have to succeed to merge PRs to Spack).
2023-05-25fix(protobuf-c): set version bound for protobuf dependency (#37917)H. Joe Lee1-1/+1
Fix #37887 GitLab CI failure.
2023-05-25fix(dpdk): add a new version 23.03. (#37919)H. Joe Lee1-1/+2
Fix E4S GitLab CI issue #37887.
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