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2020-05-14scorep: Fix build with gcc@10: (#16642)Michael Kuhn2-1/+16
2020-05-14lammps: set LAMMPS_POTENTIALS in the runtime environment (#16643)Andrew W Elble1-0/+4
so lammps can find the installed potential files
2020-05-14New package: maloc (#16631)Jen Herting1-0/+39
* [maloc] created template * [maloc] added some build dependencies * [maloc] added homepage and description * [maloc] added doc variant in an attempt to disable documentation. Still builds doc though... at least when there is a system doxygen found. Having doxygen being a dependency here can bring python in and cause issues for dependents, even when listed as only a build dependency. Maybe this is a bug? * [maloc] flake8 and fixme removal * [maloc] shorted description
2020-05-14ucx: cuda / gdrcopy variants (#16605)Andrew W Elble1-1/+18
picking up where #15724 left off.
2020-05-14miniforge3: a new package. (#16644)健美猞猁1-0/+34
2020-05-14at-spi2-core: Add 2.36.0 (#16645)Michael Kuhn1-4/+6
The pkg-config file of newer versions of at-spi2-core includes dependencies for xtst, recordproto, inputproto and fixesproto, so they have to be available at runtime as well.
2020-05-14atk: Add 2.36.0 (#16646)Michael Kuhn1-0/+1
2020-05-14at-spi2-atk: Add 2.34.2 (#16647)Michael Kuhn1-0/+1
2020-05-14r-hmisc: new version and updated dependency (#16649)Amjad Kotobi1-0/+2
2020-05-14r-survival: new version and updated dependency (#16650)Amjad Kotobi1-0/+2
2020-05-14Feature: Allow lmod configuration to set core specs (#16517)Greg Becker5-3/+30
Packages built with lmod core_compiler are placed in `Core`. Other packages may belong in `Core`. For example, python may be built with a proprietary compiler for performance, but belong on the `Core` directory. With this PR, lmod config can include a `core_specs` list. Any package that satisfies a spec in that list is placed in `Core`, regardless of its compiler or dependencies.
2020-05-13adios2: Fix build with gcc@10: (#16570)Michael Kuhn1-0/+5
2020-05-13Spack Package for ns-3 (#16630)Nathan1-0/+52
* Adding ns3 spack * Format and cleanup of ns3 spack package * Removing comments and fixing boost variant * Fixing formating
2020-05-13py-horovod: add new version (#16635)Adam J. Stewart1-2/+4
2020-05-13Helics: add python variant (#16625)Nathan1-0/+13
* Adding varient for python interface in HELICS * Append python interface to pythonpath * cleaning up blank lines * Update var/spack/repos/builtin/packages/helics/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-05-13cmake build system: filter system paths from rpaths (#16612)Greg Becker1-1/+1
2020-05-13Added alias and bash completion for spacktivate (#16472)Ben Bergen4-0/+17
2020-05-13revbayes: Update checksum (#16628)Nick Booher1-1/+1
2020-05-13conda4aarch64:New Package. (#16617)Toyohisa Kameyama1-0/+24
2020-05-13ncl: Fix build with gcc@10: (#16624)Michael Kuhn1-0/+7
2020-05-13r-exactextractr: new package (#16626)Amjad Kotobi1-0/+26
2020-05-13QE Update May 2020 (#16627)Nichols A. Romero1-5/+8
* Clarify comments about QMCPACK-to-QE converter. * Allow hdf5=serial with QE 6.4.1 + qmcpack, but apply filter_file. * Ammend comments about the use of the filter_file.
2020-05-13py-pint: added versions up to v0.11 (#16537)lpritch-lanl1-3/+9
Co-authored-by: Lori Pritchett-Sheats <lpritch@pn2002926.lanl.gov>
2020-05-13parallel-netcdf: fix build with gcc@10: (#16620)Michael Kuhn1-6/+20
2020-05-13r-xml2: new version & updated dependencies (#16604)Amjad Kotobi1-1/+2
* r-xml2: new version & updated dependencies * r-xml2: updated dependencies
2020-05-13ppopen-appl-fdm: added support to Fujitsu compilers. (#16616)Tomoki, Karatsu2-1/+17
2020-05-13charmpp: support for aarch64. (#16619)Toyohisa Kameyama1-0/+2
2020-05-13tcsh: fix build with gcc@10: (#16621)Michael Kuhn1-10/+11
2020-05-13esmf: fix build with gcc@10: (#16622)Michael Kuhn1-0/+3
2020-05-12Update docs on "spack external find" (#16482)Peter Scheibel2-8/+80
This improves the documentation for `spack external find` in several ways: * Provide a code example of implementing `determine_spec_details` for a package * Explain how to define executables to look for (and also e.g. that they are treated as regular expressions and so can pull in unexpected files). * Add the "why" for a couple of constraints (i.e. explain that this logic only works for build/run deps because it examines `PATH` for executables) * Spread the docs between build customization and packaging sections * Add cross-references * Add a label so that `spack external find` is linked from the command reference.
2020-05-12Fix axom install target (#16613)Chris White1-1/+1
2020-05-12py-plotly: unfix dependency versions (fixes #16544) (#16546)Pariksheet Nanda1-3/+5
* py-plotly: unfix dependency versions (fixes #16544) * py-plotly: add missing dependencies for #16546 * py-plotly: match setup.py instead of requirements.txt for #16546
2020-05-12velvetoptimiser: new package at 2.2.6 (#16611)Justin S1-0/+22
2020-05-12r-testthat : dependencies and version updated (#16576)Amjad Kotobi1-0/+4
* r-testthat : dependencies and version updated * Adding version conditions for dependencies * r-testthat: Fix dependecies condition
2020-05-12py-scikit-learn: add new version (#16607)Adam J. Stewart1-3/+6
2020-05-12zstd: add 1.4.4 (#16608)Justin S1-0/+1
2020-05-12travis: use bionic as default for Linux (#16521)Massimiliano Culpo3-42/+66
Modifications: - [x] Travis now uses `bionic` as a default (`xenial` used for Python 3.5, `trusty` for Python 2.6) - [x] Shell unit tests have been factored into their own run - [x] `kcov` is built only for tests that upload coverage results Overall with this we shave 3-4 mins. on each run and add an additional run of about 3 min. For some reason `kcov` 38 fails forwarding output when used with Python unit tests, so I used v34 for that and v38 (latest) for shell testing. Previously we were using v25.
2020-05-12py-threadpoolctl: add new package (#16606)Adam J. Stewart1-0/+19
2020-05-12revbayes: update for 1.1.0 (#16603)Nick Booher1-8/+20
* revbayes: update for 1.1.0 * revbayes: Fix flake8
2020-05-12bugfix: reorder variants in Spec strings (#16462)Greg Becker3-18/+17
* change print order for variants to avoid zsh parsing bugs * change tests for new variant parse order
2020-05-12new version r-rcurl (#16550)Amjad Kotobi1-0/+2
* new version r-rcurl * RCurl dependency R version updated * Adding version conditions
2020-05-12new version r-cli (#16553)Amjad Kotobi1-0/+3
* new version r-cli * r-cli : dependencies updated * Adding version conditions for dependencies
2020-05-12new version r-ellipsis (#16556)Amjad Kotobi1-0/+2
* new version r-ellipsis * r-ellipsis : R dependency updated * Adding version conditions for dependencies
2020-05-12r-rematch2 : new package (#16563)Amjad Kotobi1-0/+23
* r-rematch2 : new package * Updating URL
2020-05-12r-roxygen : dependencies and version updated (#16565)Amjad Kotobi1-0/+5
* r-roxygen : dependencies and version updated * Dependencies updated for condition
2020-05-12r-purrr : dependencies and version update (#16566)Amjad Kotobi1-0/+2
* r-purrr : dependencies and version update * Dependencies updated for condition
2020-05-12r-rversions : new package (#16572)Amjad Kotobi1-0/+28
* r-rversions : new package * URL updated r-rversions
2020-05-12r-withr : dependencies and version updated (#16577)Amjad Kotobi1-0/+2
* r-withr : dependencies and version updated * Adding version conditions for dependencies
2020-05-12r-knitr : dependencies and version updated (#16579)Amjad Kotobi1-2/+3
* r-knitr : dependencies and version updated * Adding version conditions for dependencies
2020-05-12modylas: Add flag to use preprocessor when building with Fujitsu compiler. ↵Tomoki, Karatsu1-0/+2
(#16598)
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