summaryrefslogtreecommitdiff
AgeCommit message (Collapse)AuthorFilesLines
2021-12-23Merge tag 'v0.17.1' into developMassimiliano Culpo3-1/+28
2021-12-23New subcommand: spack bootstrap status (#28004)Massimiliano Culpo5-1/+206
This command pokes the environment, Python interpreter and bootstrap store to check if dependencies needed by Spack are available. If any are missing, it shows a comprehensible message.
2021-12-23py-pymol: update package, new version 2.5.0 (#28044)Andrew W Elble2-22/+50
* py-pymol: update package, new version 2.5.0 * ensure legacy plugins still load/work
2021-12-23Reduce the unit tests jobs for the original concretizerMassimiliano Culpo1-1/+8
Only test Python 2.7, 3.6 and 3.9
2021-12-23Fix execution of style testsv0.17.1Massimiliano Culpo1-0/+2
2021-12-23Bump version and update CHANGELOG.mdMassimiliano Culpo2-1/+26
2021-12-23locks: allow locks to work under high contention (#27846)Tom Scogland1-3/+6
* locks: allow locks to work under high contention This is a bug found by Harshitha Menon. The `lock=None` line shouldn't be a release but should be ``` return (lock_type, None) ``` to inform the caller it couldn't get the lock type requested without disturbing the existing lock object in the database. There were also a couple of bugs due to taking write locks at the beginning without any checking or release, and not releasing read locks before requeueing. This version no longer gives me read upgrade to write errors, even running 200 instances on one box. * Change lock in check_deps_status to read, release if not installed, not sure why this was ever write, but read definitely is more appropriate here, and the read lock is only held out of the scope if the package is installed. * Release read lock before requeueing to reduce chance of livelock, the timeout that caused the original issue now happens in roughly 3 of 200 workers instead of 199 on average.
2021-12-23Regenerate views when specs already installed (#28113)Harmen Stoppels1-4/+2
With this commit: ``` $ spack env activate --temp $ spack install zlib ==> All of the packages are already installed ==> Updating view at /tmp/spack-faiirgmt/.spack-env/view $ spack install zlib ==> All of the packages are already installed ``` Before this PR: ``` $ spack env activate --temp $ spack install zlib ==> All of the packages are already installed $ spack install zlib ==> All of the packages are already installed ``` No view was generated
2021-12-23py-pandas: fix issue reported by verminMassimiliano Culpo1-1/+1
2021-12-23py-vermin: add latest version 1.3.2 (#28072)Morten Kristensen3-3/+4
* py-vermin: add latest version 1.3.2 * [vermin] Fixed usages of super() without arguments (v3+)
2021-12-23sbang: respect package permissive package permissions for sbang (#25764)Paul Spencer2-12/+96
Co-authored-by: Todd Gamblin <tgamblin@llnl.gov> Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2021-12-23Add setdefault option to tcl module (#14686)victorusu5-19/+79
This commit introduces the command spack module tcl setdefault <package> similar to the one already available for lmod Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-12-23Set backup=False by default in filter_file (#28036)Harmen Stoppels1-1/+1
2021-12-23Fix table formatting (#28037)Harmen Stoppels1-1/+1
2021-12-23Revert "patches: make re-applied patches idempotent (#26784)" (#27625)Harmen Stoppels4-137/+25
This reverts commit c5ca0db27fce5d772dc8a4fcffec3b62bb0bf1f3.
2021-12-23MANPATH needs a trailing ':' to utilize system defaults (#21682)Andrew W Elble3-1/+23
otherwise spack breaks using system man pages by default. Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2021-12-23Added opensuse/leap:15 to spack containerize (#27837)Christian Goll4-5/+58
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-12-23Provide meaningful message for empty environment installs (#28031)Tamara Dahlgren2-9/+26
* Provide a meaningful failure message for installation of an empty environment * Allow regenerating view per offline discussion
2021-12-23Add option to minimize full debug cores. include warning message about ↵Greg Becker5-22/+74
performance (#27970) Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2021-12-23upcxx: Update the UPC++ package to 2021.9.0 (#26996)Dan Bonachea1-117/+89
* upcxx: Update the UPC++ package to 2021.9.0 * Add the new release, and a missing older one. * Remove the spack package cruft for supporting the obsolete build system that was present in older versions that are no longer supported. * General cleanups. Support for library versions older than 2020.3.0 is officially retired, for two reasons: 1. Releases prior to 2020.3.0 had a required dependency on Python 2, which is [officially EOL](https://www.python.org/doc/sunset-python-2/) as of Jan 1 2020, and is no longer considered secure. 2. (Most importantly) The UPC++ development team is unable/unwilling to support releases more than two years old. UPC++ provides robust backwards-compatibility to earlier releases of UPC++ v1.0, with very rare well-documented/well-motivated exceptions. Users are strongly encouraged to update to a current version of UPC++. NOTE: Most of the lines changed in this commit are simply re-indentation, and thus might be best reviewed in a diff that ignores whitespace. * upcxx: Detect Cray XC more explicitly This change is necessary to prevent false matches occuring on new Cray Shasta systems, which do not use the aries network but were incorrectly being treated as a Cray XC + aries platform. UPC++ has not yet deployed official native support for Cray Shasta, but this change is sufficient to allow building the portable backends there.
2021-12-23Install dir creation message demoted to "debug" level (#27911)Harmen Stoppels1-2/+1
2021-12-23Improve debug info from concretizer (#27707)Greg Becker2-2/+33
2021-12-23spack audit: fix API calls (#27713)Massimiliano Culpo1-4/+4
This broke in #24858
2021-12-23Handle byte sequences which are not encoded as UTF8 while logging. (#21447)Paul Ferrell1-1/+6
Fix builds which produce a lines with non-UTF8 output while logging The alternative is to read in binary mode, and then decode while ignoring errors.
2021-12-23Use bash in setup_git.sh (#27676)Harmen Stoppels1-1/+1
2021-12-23ci: run style unit tests only if we target develop (#27472)Harmen Stoppels5-12/+28
Some tests assume the base branch is develop, but this branch may not have been checked out.
2021-12-23Turn some verbose messages into debug messages (#27408)Harmen Stoppels1-8/+8
2021-12-23Fix overloaded argparse keys (#27379)Harmen Stoppels6-21/+15
Commands should not reuse option names defined in main.
2021-12-23Fix log-format reporter ignoring install errors (#25961)Jordan Galby3-31/+48
When running `spack install --log-format junit|cdash ...`, install errors were ignored. This made spack continue building dependents of failed install, ignoring `--fail-fast`, and exit 0 at the end.
2021-12-23openmpi fix external find for 0.17 (#27255)Robert Underwood1-1/+1
2021-12-23make --enable-locks actually enable locks (#24675)Dylan Simon1-2/+3
2021-12-23simgrid package: add versions 3.28 and 3.29 (#28118)Vinícius1-0/+4
2021-12-22acts: add v15.1 and record incompatibility (#27942)Hadrien G1-1/+3
Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2021-12-22votca-*: merge packages into one (#28073)Christoph Junghans7-72/+129
* votca-*: merge packages into one * Update package.py * votca-*: make old version as deprecated * votca-*: mark stable deprecated as well
2021-12-22New package: py-qpth (#28047)Jen Herting1-0/+21
Co-authored-by: Doug Heckman <dahdco@rit.edu>
2021-12-22New package: tree-sitter (#28110)albestro1-0/+23
2021-12-22llvm: Fix the llvm versions for using the MicrosoftDemange patch (#28140)Bernhard Kaindl1-2/+2
2021-12-22locks: allow locks to work under high contention (#27846)Tom Scogland1-3/+6
* locks: allow locks to work under high contention This is a bug found by Harshitha Menon. The `lock=None` line shouldn't be a release but should be ``` return (lock_type, None) ``` to inform the caller it couldn't get the lock type requested without disturbing the existing lock object in the database. There were also a couple of bugs due to taking write locks at the beginning without any checking or release, and not releasing read locks before requeueing. This version no longer gives me read upgrade to write errors, even running 200 instances on one box. * Change lock in check_deps_status to read, release if not installed, not sure why this was ever write, but read definitely is more appropriate here, and the read lock is only held out of the scope if the package is installed. * Release read lock before requeueing to reduce chance of livelock, the timeout that caused the original issue now happens in roughly 3 of 200 workers instead of 199 on average.
2021-12-22Use consistent method of checking for presence of info in connection (#27694)Joseph Snyder3-29/+62
Fixes #27652 Ensure that mirror's to_dict function returns a syaml_dict object for all code paths. Switch to using the .get function for accessing the potential information from the S3 mirror objects. If the key is not there, it will gracefully return None instead of failing with a KeyError Additionally, check that the connection object is a dictionary before trying to "get" from it. Add a test for the capturing of the new S3 information.
2021-12-21New package: microsocks (#27859)Pat Riehecky1-0/+31
2021-12-21openfoam package: add v2112 release and latest patched v2106 (#28108)Mark Olesen1-2/+3
Also remove x86_64-only handling for Darwin
2021-12-21perl: fix macOS build (#26290)Seth R. Johnson1-1/+15
* perl: fix macOS build With both 5.34.0 and 5.32.1 the build fails on macos-bigsur-skylake %clang@12.0.5 and %clang13.0.0 : ``` 2 errors found in build log: 579013 /private/var/folders/fy/x2xtwh1n7fn0_0q2kk29xkv9vvmbqb/T/s3j/spack-stage/spack-stage-perl-5.34.0-tpha2u52qfwaraidpzzbf6u4dbqg7dk5/spack-src/cpan/ Math-BigInt-FastCalc/../../miniperl "-I../../lib" -MExtUtils::Command::MM -e 'cp_nonempty' -- FastCalc.bs ../../lib/auto/Math/BigInt/FastCalc/Fas tCalc.bs 644 579014 579015 Everything is up to date. Type '/Applications/Xcode.app/Contents/Developer/usr/bin/make test' to run test suite. 579016 DYLD_LIBRARY_PATH=/private/var/folders/fy/x2xtwh1n7fn0_0q2kk29xkv9vvmbqb/T/s3j/spack-stage/spack-stage-perl-5.34.0-tpha2u52qfwaraidpzzbf6u4dbqg7d k5/spack-src ./perl -Ilib -I. installperl --destdir= 579017 WARNING: You've never run 'make test' or some tests failed! (Installing anyway.) 579018 /rnsdhpc/code/spack/opt/spack/apple-clang/perl/tpha2u5/bin/perl5.34.0 >> 579019 install_name_tool: error: sh -c '/Applications/Xcode.app/Contents/Developer/usr/bin/xcodebuild -sdk /Applications/Xcode.app/Contents/Developer/Pl atforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk -find install_name_tool 2> /dev/null' failed with exit code 256: (null) (errno=Invalid argument ) 579020 xcode-select: Failed to locate 'install_name_tool', requesting installation of command line developer tools. 579021 Cannot update /rnsdhpc/code/spack/opt/spack/apple-clang/perl/tpha2u5/bin/perl5.34.0 dependency paths >> 579022 make: *** [install-all] Error 72 ``` This is due to SYSTEM_VERSION_COMPAT being set. * perl: conditionally set SYSTEM_VERSION_COMPAT based on CLT The version of command line tools is the only difference between @alalazo and my builds: his (v11) works only when SYSTEM_VERSION_COMPAT is set to 1, and mine (v12.5 and v13) only work when it is unset.
2021-12-21Regenerate views when specs already installed (#28113)Harmen Stoppels1-4/+2
With this commit: ``` $ spack env activate --temp $ spack install zlib ==> All of the packages are already installed ==> Updating view at /tmp/spack-faiirgmt/.spack-env/view $ spack install zlib ==> All of the packages are already installed ``` Before this PR: ``` $ spack env activate --temp $ spack install zlib ==> All of the packages are already installed $ spack install zlib ==> All of the packages are already installed ``` No view was generated
2021-12-21structure: fixing build errors with gcc10+ removing unused dep (#28097)snehring1-2/+4
2021-12-21New package: py-onnxmltools and dependencies (#28023)iarspider8-4/+395
* New package: py-onnxmltools and dependencies * Small fix * Changes from review * Apply suggestions from code review Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update recipe following review Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-12-21build(deps): bump docker/login-action from 1.10.0 to 1.12.0 (#28100)dependabot[bot]1-2/+2
Bumps [docker/login-action](https://github.com/docker/login-action) from 1.10.0 to 1.12.0. - [Release notes](https://github.com/docker/login-action/releases) - [Commits](https://github.com/docker/login-action/compare/f054a8b539a109f9f41c372932f1ae047eff08c9...42d299face0c5c43a0487c477f595ac9cf22f1a7) --- updated-dependencies: - dependency-name: docker/login-action dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2021-12-21soapdenovo2: fixing compiler errors in gcc10+ (#28098)snehring1-0/+8
2021-12-21py-build: add virtualenv variant (#28099)Adam J. Stewart1-0/+3
2021-12-21pcma: fixing compilation issues with gcc10+ (#28101)snehring1-0/+4
2021-12-21axom: add v0.6.1, fixed e4s builds (#28067)Chris White4-8/+66
generated by cgit v1.2.3-60-g2f50 (git 2.42.0) at 2024-07-17 07:42:30 +0000