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2015-12-19Merge branch 'develop' of https://github.com/llnl/spack into developGregory L. Lee1-3/+3
2015-12-19added mrnet 5.0.1Gregory L. Lee1-0/+1
2015-12-19Fix #254: libtool & distutils want certain compiler names.Todd Gamblin23-15/+77
This changes the compiler wrappers so that they are called by the same name as the wrapped compiler. Many builds make assumptions about compiler names, and we need the spack compilers to be recognizable so that build systems will get their flags right. This adds per-compiler subdirectories to lib/spack/spack/env directory that contain symlinks to cc for the C, C++, F77, and F90 compilers. The build now sets CC, CXX, F77, and F90 to point to these links instead of to the generically named cc, c++, f77, and f90 wrappers.
2015-12-18Merge pull request #252 from JohnWestlund/developTodd Gamblin1-3/+3
remove possible trailing slash in _sp_prefix or _sp_share_dir
2015-12-18Fix #244: errors on uninstallTodd Gamblin2-9/+23
- Extension logic didn't take conditional deps into account. - Extension methods now check for whether the extnesion is in the extendee map AND whether the dependency is actually present in the spec yet.
2015-12-18minor formatting.Todd Gamblin1-0/+8
2015-12-18Fix import error.Todd Gamblin1-0/+1
2015-12-18remove possible trailing slash in _sp_prefix or _sp_share_dirJohn Westlund1-3/+3
2015-12-18Format to 80 char width.Todd Gamblin1-4/+5
2015-12-18tau : removed direct otf2 supportalalazo2-21/+9
2015-12-18Merge branch 'develop' of https://github.com/alalazo/spack into packages/taualalazo38-27/+1536
2015-12-18Improved tau build and added optional dependenciesalalazo6-64/+236
2015-12-17Merge pull request #236 from nolta/cmake-enable-sslTodd Gamblin1-1/+2
cmake: enable ssl, for https downloads
2015-12-17Merge pull request #205 from trws/shell-arg-handling-fixTodd Gamblin1-1/+7
fix for the shell arg handling issues
2015-12-17Merge pull request #250 from davidbeckingsale/features/lmodTodd Gamblin1-0/+26
Added Lmod package
2015-12-17Added Lmod packageDavid Beckingsale1-0/+26
2015-12-17Merge pull request #86 from jgalarowicz/developTodd Gamblin17-11/+1240
Add support for Krell Institute related products.
2015-12-17Change back the previous boost change and change the mrnet variant name to ↵Jim Galarowicz7-17/+16
lwthreads.
2015-12-16Merge pull request #246 from LLNL/features/245-pdb-debugTodd Gamblin1-0/+5
added option to enable pdb debug
2015-12-16added option to enable pdb debugGregory L. Lee1-0/+5
2015-12-16Merge pull request #167 from mathstuf/hdf5-fix-mpi-dependencyTodd Gamblin5-7/+17
Hdf5 fix mpi dependency
2015-12-16Merge pull request #239 from LLNL/bugfix/238-db-specs-not-concreteGregory Lee3-4/+17
Fix #238: Database specs need to be concrete when read in as well.
2015-12-16Merge pull request #241 from epfl-scitas/packages/gnuplotTodd Gamblin7-1/+174
gnuplot : added package
2015-12-16Merge pull request #242 from epfl-scitas/packages/gslTodd Gamblin1-0/+46
gsl : added package
2015-12-16Merge pull request #243 from nolta/patch-2Todd Gamblin1-2/+2
minor comment tweak in modules.py
2015-12-16minor comment tweak in modules.pyMike Nolta1-2/+2
2015-12-16gsl : added packagealalazo1-0/+46
2015-12-16gnuplot : modifications to build on RHLE 6Massimiliano Culpo3-2/+7
2015-12-15Fix #238: Database specs need to be concrete when read in as well.Todd Gamblin3-4/+17
2015-12-15cmake: enable ssl, for https downloadsMike Nolta1-1/+2
By default cmake builds its own curl, without SSL support. This patch enables SSL when building cmake, fixing the following error: error: downloading 'https://...' failed status_code: 1 status_string: "Unsupported protocol" log: Protocol "https" not supported or disabled in libcurl
2015-12-15gnuplot : added packagealalazo6-0/+168
2015-12-14Merge pull request #233 from LLNL/bugfix/206-value-errorTodd Gamblin1-2/+4
Fix #206: need to make deps AND root concrete when read in.
2015-12-14Fix #206: need to make deps AND root concrete when read in.Todd Gamblin1-2/+4
2015-12-14Merge pull request #232 from LLNL/bugfix/package-cache-217Todd Gamblin3-16/+26
Bugfix/package cache 217
2015-12-14adding external dependencies + variants for mpi, shared and compressionNicolas Richart1-15/+102
2015-12-14Merge pull request #229 from epfl-scitas/packages/fftwTodd Gamblin1-0/+96
fftw : added package
2015-12-14fftw : added packagealalazo1-0/+96
2015-12-13Fix build of krell tools to use spack with minimal impact on rest of spack ↵Jim Galarowicz7-66/+52
packages.
2015-12-11Fix merge conflict with papi package.Jim Galarowicz240-423/+1169
2015-12-11Make internal hash dep sort order match external one.Todd Gamblin1-1/+2
2015-12-11Fix #217: update spec_dag test for new `_cmp_key`.Todd Gamblin1-3/+5
2015-12-11Fix #217: Use MUCH faster hashing, reduce number of DAG copies.Todd Gamblin2-12/+18
This changes the hash algorithm so that it does much less object allocation and copying, and so that it is correct. The old version of `_cmp_key()` would call `sorted_deps`, which would call `flat_dependencies` to get a list of dependencies so that it could sort them in alphabetical order. This isn't necessary in the `_cmp_key()`, and in fact we want more DAG structure than that to be included in the `_cmp_key()`. The new version constructs a tuple without copying the Spec DAG, and the tuple contains hashes of sub-DAGs that are computed recursively in-place. This is way faster than the previous algorithm and reduces the numebr of copies significantly. It is also a correct DAG hash. Example timing and copy counts for the different hashing algorithms we've tried: Original (wrong) Spec hash: ``` 106,170 copies real 0m5.024s user 0m4.949s sys 0m0.104s ``` Spec hash using YAML `dag_hash()`: ``` 3,794 copies real 0m5.024s user 0m4.949s sys 0m0.104s New no-copy, no-YAML hash: ``` 3,594 copies real 0m2.543s user 0m2.435s sys 0m0.104s ``` So now we have a hash that is correct AND faster. The remaining ~3k copies happen mostly during concretization, and as all packages are initially loaded. I believe this is because Spack currently has to load all packages to figure out virtual dependency information; it could also be becasue there ar a lot of lookups of partial specs in concretize. I can investigate this further.
2015-12-11Fix #217: Make package cache use DAG hash instead of sorted deps.Todd Gamblin1-7/+8
- Gets rid of last vestige of old-style specs. - Uses new hashing for lookup
2015-12-10fix path resolution for mirror packages, especially with dependency fetchingTom Scogland2-1/+2
2015-12-10hdf5: update dependents to declare MPI supportBen Boeckel4-3/+4
2015-12-10paraview: update hdf5 commentBen Boeckel1-1/+1
2015-12-10hdf5: make mpi support optionalBen Boeckel1-3/+12
2015-12-10add dependency fetching to mirror creationTom Scogland3-3/+12
2015-12-10fetch: add options to fetch missing or all depsTom Scogland1-1/+12
Small additions to fetch to make it easier to fetch all files necessary for a build on a system without network connectivity.
2015-12-09install python files to libxml2 prefix instead of python prefix and ignore ↵Gregory L. Lee1-4/+6
non-python files when activating
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